Wall clock time and date at job start Tue Mar 31 2020 20:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47226 * 2 1 4 4 H 1.09007 * 109.49527 * 54.94308 * 3 2 1 5 5 C 1.53186 * 109.50377 * 294.84265 * 3 2 1 6 6 N 1.46935 * 108.77589 * 294.68831 * 5 3 2 7 7 C 1.34767 * 120.63503 * 126.36606 * 6 5 3 8 8 O 1.21289 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00183 * 179.97438 * 7 6 5 10 10 C 1.53779 * 113.61352 * 277.49776 * 9 7 6 11 11 C 1.53789 * 87.07926 * 220.01879 * 10 9 7 12 12 C 1.53779 * 87.08200 * 25.43273 * 11 10 9 13 13 C 1.46922 * 118.73318 * 306.38550 * 6 5 3 14 14 C 1.53197 * 108.76514 * 53.61808 * 13 6 5 15 15 C 1.53036 * 109.31209 * 305.34157 * 14 13 6 16 16 H 1.08994 * 109.46108 * 301.36894 * 15 14 13 17 17 N 1.46905 * 109.45893 * 181.40017 * 15 14 13 18 18 C 1.46892 * 110.99935 * 84.97425 * 17 15 14 19 19 C 1.50706 * 109.47095 * 180.02562 * 18 17 15 20 20 O 1.21292 * 119.99870 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00455 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00240 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00367 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 0.26929 * 24 22 21 27 27 H 1.48500 * 109.47088 * 269.73243 * 26 24 22 28 28 H 1.48505 * 109.47152 * 29.72720 * 26 24 22 29 29 H 1.48494 * 109.47142 * 149.72720 * 26 24 22 30 30 H 1.08998 * 109.47222 * 59.99404 * 1 2 3 31 31 H 1.09005 * 109.47402 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46651 * 299.99388 * 1 2 3 33 33 H 1.09005 * 109.46180 * 240.00365 * 2 1 3 34 34 H 1.08998 * 109.47222 * 120.00596 * 2 1 3 35 35 H 1.09007 * 109.58505 * 54.46817 * 5 3 2 36 36 H 1.08994 * 109.59372 * 174.89728 * 5 3 2 37 37 H 1.08998 * 112.84824 * 48.80536 * 9 7 6 38 38 H 1.09000 * 113.61591 * 334.56577 * 10 9 7 39 39 H 1.08992 * 113.61591 * 105.47265 * 10 9 7 40 40 H 1.08997 * 113.61059 * 270.88164 * 11 10 9 41 41 H 1.08997 * 113.68865 * 139.99596 * 11 10 9 42 42 H 1.09001 * 113.61544 * 220.01864 * 12 11 10 43 43 H 1.09005 * 113.68790 * 89.12312 * 12 11 10 44 44 H 1.08997 * 109.58643 * 173.39631 * 13 6 5 45 45 H 1.09003 * 109.58825 * 293.67935 * 13 6 5 46 46 H 1.09003 * 109.48274 * 185.39581 * 14 13 6 47 47 H 1.08999 * 109.50782 * 65.30152 * 14 13 6 48 48 H 1.00904 * 110.99696 * 321.01857 * 17 15 14 49 49 H 1.08993 * 109.47666 * 60.00130 * 18 17 15 50 50 H 1.09000 * 109.47198 * 299.99775 * 18 17 15 51 51 H 0.96999 * 120.00043 * 359.97438 * 21 19 18 52 52 H 0.97005 * 120.00032 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9822 0.8412 5 6 1.6386 2.1268 -1.3103 6 7 2.3366 1.4666 -2.4220 7 6 1.6490 0.9911 -3.4791 8 8 0.4423 1.1059 -3.5189 9 6 2.3796 0.3169 -4.6117 10 6 2.9764 1.3006 -5.6319 11 6 2.5305 0.3149 -6.7250 12 6 1.4537 -0.1688 -5.7394 13 6 3.7985 1.3341 -2.3589 14 6 4.1755 0.6584 -1.0367 15 6 3.5653 1.4449 0.1256 16 1 3.9301 2.4717 0.1005 17 7 3.9527 0.8189 1.3969 18 6 5.2667 1.3012 1.8423 19 6 5.6298 0.6381 3.1460 20 8 4.8685 -0.1576 3.6543 21 7 6.8000 0.9300 3.7476 22 6 7.1301 0.3271 4.9338 23 1 6.4522 -0.3815 5.3865 24 6 8.3362 0.6284 5.5543 25 7 8.6524 0.0509 6.6916 26 14 9.5048 1.8606 4.7760 27 1 10.4409 1.1500 3.8683 28 1 8.7262 2.8596 4.0006 29 1 10.2760 2.5518 5.8402 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.5613 2.0404 -1.4526 36 1 1.9213 3.1789 -1.2748 37 1 3.0847 -0.4404 -4.2692 38 1 2.4577 2.2585 -5.6699 39 1 4.0584 1.4067 -5.5548 40 1 3.2780 -0.4424 -6.9612 41 1 2.1241 0.7997 -7.6125 42 1 1.3065 -1.2488 -5.7489 43 1 0.5181 0.3866 -5.8058 44 1 4.1465 0.7247 -3.1929 45 1 4.2575 2.3214 -2.4113 46 1 5.2606 0.6406 -0.9340 47 1 3.7918 -0.3617 -1.0269 48 1 3.9430 -0.1873 1.3222 49 1 5.2291 2.3815 1.9819 50 1 6.0171 1.0580 1.0900 51 1 7.4087 1.5666 3.3413 52 1 9.4946 0.2610 7.1246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323127533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:56 Heat of formation + Delta-G solvation = -52.063235 kcal Electronic energy + Delta-G solvation = -30268.222148 eV Core-core repulsion = 26268.032399 eV Total energy + Delta-G solvation = -4000.189749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06560 -39.34982 -38.32697 -37.36852 -35.19646 -34.17082 -33.83015 -31.70090 -31.05600 -29.82491 -27.69729 -26.51918 -26.03179 -24.63062 -23.98185 -23.28960 -22.40341 -20.97901 -19.48335 -19.42774 -18.67953 -18.28877 -17.74105 -16.37205 -16.16222 -15.97043 -15.60535 -15.28176 -15.10036 -14.76314 -14.66785 -14.46685 -14.21073 -13.89657 -13.41640 -13.31577 -13.15416 -12.97104 -12.79127 -12.74144 -12.44581 -12.37859 -12.29059 -12.10550 -11.94901 -11.77267 -11.65746 -11.49277 -11.40338 -11.18905 -10.93680 -10.81479 -10.71944 -10.61915 -10.56529 -10.31221 -9.99267 -9.82304 -9.59307 -8.87982 -8.60466 -8.21195 -8.12842 -6.32804 -3.84346 2.37947 2.74232 3.00377 3.03994 3.12959 3.72014 4.01719 4.07909 4.08732 4.14989 4.22105 4.37983 4.40588 4.57632 4.71440 4.73563 4.82000 4.86193 4.95963 5.10888 5.13377 5.18469 5.21441 5.26796 5.35489 5.37271 5.42987 5.45466 5.47229 5.48937 5.54762 5.57650 5.60477 5.68781 5.74094 5.76779 5.83374 5.88444 5.92390 6.00460 6.07926 6.15012 6.21831 6.38103 6.42833 7.09548 7.16121 7.54453 7.56831 7.96285 8.12788 8.57904 8.93321 9.40568 9.80884 10.80306 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002315 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.727764 B =12089.875779 C =13012.216594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.091 0.909 5 C 0.111 3.889 6 N -0.605 5.605 7 C 0.525 3.475 8 O -0.542 6.542 9 C -0.140 4.140 10 C -0.123 4.123 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.113 3.887 14 C -0.172 4.172 15 C 0.094 3.906 16 H 0.078 0.922 17 N -0.660 5.660 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.047 4.794 -26.699 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.109 0.891 5 C -0.012 4.012 6 N -0.338 5.338 7 C 0.314 3.686 8 O -0.419 6.419 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.180 4.180 12 C -0.156 4.156 13 C -0.011 4.011 14 C -0.212 4.212 15 C -0.017 4.017 16 H 0.096 0.904 17 N -0.291 5.291 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.202 1.202 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.172 0.828 49 H 0.105 0.895 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.403 4.729 -25.760 28.181 hybrid contribution 1.970 0.504 -0.876 2.214 sum -8.433 5.233 -26.636 28.425 Atomic orbital electron populations 1.21818 0.96040 1.01445 1.01749 1.21504 0.95766 0.96000 1.01983 1.21525 0.94892 0.97489 0.96855 0.89066 1.21787 0.99008 0.95395 0.84960 1.48087 1.07456 1.58390 1.19913 1.20484 0.87514 0.78012 0.82620 1.90671 1.14215 1.57932 1.79070 1.22808 1.00103 0.99955 0.93256 1.22828 1.00924 0.97600 0.94681 1.22833 0.98910 0.99007 0.97216 1.22807 0.97947 1.01590 0.93257 1.21686 0.79893 1.01145 0.98336 1.22779 1.01569 1.01162 0.95660 1.21573 0.94862 0.98224 0.87059 0.90375 1.60178 1.28124 1.12805 1.28031 1.21743 0.90446 1.00503 0.95810 1.19729 0.83017 0.86467 0.87291 1.90571 1.50345 1.37300 1.66371 1.42211 1.17711 1.40610 1.22516 1.19428 1.04314 1.22964 0.96640 0.86302 1.25048 0.97291 0.97892 0.96000 1.69624 1.23837 1.42540 1.16116 0.86666 0.81606 0.81433 0.79634 1.19695 1.19485 1.20170 0.92442 0.93217 0.92741 0.92649 0.90831 0.88459 0.91688 0.87038 0.89723 0.90696 0.89860 0.90977 0.91053 0.88726 0.89771 0.91167 0.90609 0.90654 0.82808 0.89538 0.93860 0.79730 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.68 37.16 0.36 -1.34 16 2 C -0.12 -1.29 4.67 -26.73 -0.12 -1.41 16 3 C -0.09 -0.91 2.38 -90.51 -0.22 -1.12 16 4 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.11 1.07 5.70 -3.71 -0.02 1.05 16 6 N -0.61 -5.42 2.33 -172.76 -0.40 -5.82 16 7 C 0.53 5.40 7.22 -10.99 -0.08 5.32 16 8 O -0.54 -7.47 15.31 5.55 0.08 -7.39 16 9 C -0.14 -1.03 2.74 -90.96 -0.25 -1.28 16 10 C -0.12 -0.72 7.49 -25.92 -0.19 -0.92 16 11 C -0.14 -0.78 8.08 -25.92 -0.21 -0.99 16 12 C -0.12 -0.87 7.41 -25.92 -0.19 -1.07 16 13 C 0.11 0.79 6.34 -3.71 -0.02 0.77 16 14 C -0.17 -1.46 4.99 -26.61 -0.13 -1.59 16 15 C 0.09 0.97 2.13 -67.67 -0.14 0.83 16 16 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 17 N -0.66 -9.42 5.42 -107.95 -0.59 -10.01 16 18 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 19 C 0.45 9.92 7.82 -10.98 -0.09 9.84 16 20 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 21 N -0.59 -13.80 5.09 -10.96 -0.06 -13.86 16 22 C -0.30 -8.54 10.16 -14.94 -0.15 -8.69 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 26 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.62 6.13 -51.93 -0.32 0.31 16 34 H 0.07 0.94 7.00 -51.93 -0.36 0.58 16 35 H 0.10 1.08 5.21 -51.93 -0.27 0.80 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.69 7.20 -51.93 -0.37 0.31 16 38 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.85 7.43 -51.93 -0.39 0.47 16 44 H 0.08 0.46 5.69 -51.93 -0.30 0.16 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.62 7.42 -51.93 -0.39 0.24 16 47 H 0.07 0.70 6.45 -51.93 -0.33 0.37 16 48 H 0.35 5.35 7.33 -39.29 -0.29 5.06 16 49 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 50 H 0.04 0.57 7.41 -51.93 -0.38 0.18 16 51 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 52 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -33.41 397.05 -8.99 -42.41 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.58 Total: 12.88 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.59 Total: 1.10 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.27 Total: -54.52 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.41 -8.99 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323127533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.657 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds