Wall clock time and date at job start Tue Mar 31 2020 20:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47234 * 2 1 4 4 H 1.08999 * 109.49475 * 55.57523 * 3 2 1 5 5 C 1.53187 * 109.49362 * 295.50807 * 3 2 1 6 6 N 1.46934 * 108.77321 * 185.41083 * 5 3 2 7 7 C 1.34768 * 120.63256 * 233.63337 * 6 5 3 8 8 O 1.21280 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00273 * 179.97438 * 7 6 5 10 10 C 1.53778 * 113.61382 * 279.14221 * 9 7 6 11 11 C 1.53957 * 87.01784 * 220.04560 * 10 9 7 12 12 C 1.53772 * 113.61622 * 181.52909 * 9 7 6 13 13 C 1.46928 * 118.73678 * 53.61393 * 6 5 3 14 14 C 1.53195 * 108.77398 * 306.39039 * 13 6 5 15 15 C 1.53038 * 109.49725 * 175.67354 * 3 2 1 16 16 H 1.09003 * 109.46004 * 61.29552 * 15 3 2 17 17 N 1.46903 * 109.46109 * 301.33954 * 15 3 2 18 18 C 1.46899 * 111.00094 * 155.23706 * 17 15 3 19 19 C 1.50699 * 109.46774 * 179.97438 * 18 17 15 20 20 O 1.21289 * 120.00432 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99905 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00122 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00287 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99995 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99946 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99925 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47359 * 89.99899 * 26 24 22 28 28 H 1.48501 * 109.47349 * 210.00061 * 26 24 22 29 29 H 1.48508 * 109.47375 * 329.99986 * 26 24 22 30 30 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47232 * 299.99908 * 1 2 3 32 32 H 1.09002 * 109.47280 * 60.00371 * 1 2 3 33 33 H 1.08994 * 109.47418 * 239.99635 * 2 1 3 34 34 H 1.09001 * 109.47011 * 120.00108 * 2 1 3 35 35 H 1.09003 * 109.58481 * 65.63342 * 5 3 2 36 36 H 1.08992 * 109.59238 * 305.20293 * 5 3 2 37 37 H 1.08999 * 112.84486 * 50.33420 * 9 7 6 38 38 H 1.09008 * 113.61156 * 334.56032 * 10 9 7 39 39 H 1.08999 * 113.61846 * 105.46488 * 10 9 7 40 40 H 1.09007 * 113.53315 * 270.80928 * 11 10 9 41 41 H 1.08993 * 113.66682 * 139.93092 * 11 10 9 42 42 H 1.08996 * 113.61830 * 254.52772 * 12 9 7 43 43 H 1.08997 * 113.61715 * 25.43604 * 12 9 7 44 44 H 1.08998 * 109.58980 * 186.60377 * 13 6 5 45 45 H 1.09000 * 109.58807 * 66.17355 * 13 6 5 46 46 H 1.09000 * 109.49864 * 174.58523 * 14 13 6 47 47 H 1.08997 * 109.49824 * 294.68437 * 14 13 6 48 48 H 1.00898 * 111.00111 * 31.27713 * 17 15 3 49 49 H 1.08997 * 109.46941 * 299.99258 * 18 17 15 50 50 H 1.09001 * 109.47035 * 60.00005 * 18 17 15 51 51 H 0.97000 * 119.99837 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99641 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6136 1.9791 0.8476 5 6 1.6241 2.1318 -1.3033 6 7 2.2302 3.4696 -1.3450 7 6 1.4685 4.5625 -1.5489 8 8 0.2707 4.4473 -1.7005 9 6 2.1049 5.9280 -1.5884 10 6 2.3798 6.5201 -0.1960 11 6 1.9194 7.8729 -0.7689 12 6 1.0974 7.0717 -1.7922 13 6 3.6825 3.5933 -1.1597 14 6 4.0753 2.8875 0.1420 15 6 3.5665 1.4446 0.1088 16 1 3.9926 0.9289 -0.7518 17 7 3.9702 0.7548 1.3414 18 6 5.3324 0.2180 1.2223 19 6 5.7108 -0.4803 2.5030 20 8 4.9235 -0.5259 3.4245 21 7 6.9243 -1.0542 2.6245 22 6 7.2688 -1.6890 3.7897 23 1 6.5680 -1.7289 4.6106 24 6 8.5196 -2.2812 3.9147 25 7 9.3725 -2.2323 2.9162 26 14 8.9893 -3.1455 5.5027 27 1 8.5954 -4.5751 5.4234 28 1 10.4572 -3.0470 5.7045 29 1 8.2886 -2.5015 6.6428 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.5383 2.2213 -1.3389 36 1 1.9726 1.5461 -2.1538 37 1 2.9619 5.9762 -2.2603 38 1 1.7237 6.1293 0.5819 39 1 3.4322 6.5001 0.0870 40 1 2.7265 8.4537 -1.2157 41 1 1.3093 8.4554 -0.0787 42 1 1.1160 7.4964 -2.7958 43 1 0.0901 6.8321 -1.4515 44 1 3.9550 4.6470 -1.1006 45 1 4.1989 3.1266 -1.9986 46 1 5.1606 2.8883 0.2430 47 1 3.6303 3.4108 0.9882 48 1 3.3140 0.0263 1.5797 49 1 5.3723 -0.4915 0.3958 50 1 6.0296 1.0345 1.0344 51 1 7.5538 -1.0181 1.8874 52 1 10.2455 -2.6460 3.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323127536.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:00 Heat of formation + Delta-G solvation = -61.082192 kcal Electronic energy + Delta-G solvation = -30046.732720 eV Core-core repulsion = 26046.151879 eV Total energy + Delta-G solvation = -4000.580841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91831 -39.20574 -38.11579 -37.33058 -35.28680 -34.34709 -33.78505 -31.31825 -30.96424 -29.71736 -27.64370 -26.35035 -25.95197 -24.63670 -24.37964 -23.30103 -21.41155 -20.75418 -20.05424 -19.25149 -18.88812 -17.90363 -17.66965 -16.59368 -16.13615 -15.83005 -15.43298 -15.32437 -14.87477 -14.75141 -14.49935 -14.12434 -13.91126 -13.89830 -13.71168 -13.44227 -13.23284 -13.02331 -12.79740 -12.59114 -12.37156 -12.30872 -12.12388 -12.00264 -11.77919 -11.64932 -11.51226 -11.46035 -11.17130 -11.03560 -10.86967 -10.75315 -10.72542 -10.67887 -10.40689 -10.33644 -10.22467 -9.79043 -9.52335 -8.84815 -8.45385 -8.07936 -7.97261 -6.43233 -3.83923 2.41492 2.76869 3.16660 3.25451 3.31483 3.89349 4.04955 4.14408 4.21778 4.27481 4.30015 4.47667 4.48904 4.59223 4.65288 4.77092 4.93726 4.98932 5.11793 5.15804 5.16749 5.22952 5.23409 5.34570 5.37513 5.40609 5.43386 5.46326 5.51700 5.56881 5.59994 5.64167 5.73594 5.76021 5.77099 5.82815 5.88847 5.95091 6.02128 6.07520 6.10043 6.15514 6.21516 6.30715 6.37346 7.19658 7.23784 7.53885 7.67079 7.98949 8.05081 8.59909 9.16633 9.52932 10.04456 10.74529 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002263 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.743015 B =12370.303330 C =13386.594847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.101 4.101 4 H 0.084 0.916 5 C 0.118 3.882 6 N -0.609 5.609 7 C 0.525 3.475 8 O -0.545 6.545 9 C -0.139 4.139 10 C -0.123 4.123 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.107 3.893 14 C -0.124 4.124 15 C 0.093 3.907 16 H 0.043 0.957 17 N -0.665 5.665 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.351 0.649 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 14.995 -13.603 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.121 4.121 4 H 0.103 0.897 5 C -0.005 4.005 6 N -0.342 5.342 7 C 0.314 3.686 8 O -0.422 6.422 9 C -0.160 4.160 10 C -0.161 4.161 11 C -0.180 4.180 12 C -0.156 4.156 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.018 4.018 16 H 0.061 0.939 17 N -0.300 5.300 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.174 0.826 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.475 15.377 -12.744 23.548 hybrid contribution 0.906 -1.352 -0.309 1.656 sum -11.569 14.025 -13.053 22.382 Atomic orbital electron populations 1.21788 0.95367 1.01750 1.02014 1.21606 0.96461 0.95596 1.02581 1.21690 0.95296 0.96629 0.98493 0.89719 1.21702 1.00016 0.81912 0.96891 1.48145 1.08153 1.06604 1.71252 1.20554 0.86798 0.85835 0.75433 1.90666 1.14940 1.86511 1.50121 1.22801 1.00882 0.91725 1.00616 1.22885 1.02354 0.96076 0.94774 1.22868 1.00066 0.96215 0.98814 1.22798 0.98726 0.94158 0.99878 1.21844 0.79752 1.01849 0.98220 1.21942 1.01830 0.95507 0.96992 1.21488 0.93770 0.94841 0.91654 0.93888 1.60145 1.03066 1.34577 1.32261 1.21715 0.91639 0.98295 0.96538 1.19821 0.83771 0.84421 0.89389 1.90525 1.51195 1.63572 1.41414 1.41868 1.13333 1.48617 1.16260 1.19700 0.99680 1.30050 0.93406 0.87943 1.25260 0.95687 0.98066 0.98951 1.69609 1.08004 1.45204 1.31536 0.85862 0.77522 0.79428 0.81504 1.20430 1.20916 1.19398 0.92613 0.92472 0.92639 0.91859 0.90839 0.88633 0.91633 0.87028 0.89574 0.90442 0.89877 0.90938 0.91117 0.88790 0.89427 0.91327 0.90338 0.90516 0.82564 0.93978 0.89711 0.77491 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.66 37.15 0.36 -1.09 16 2 C -0.12 -1.29 5.25 -26.73 -0.14 -1.43 16 3 C -0.10 -1.10 2.03 -90.50 -0.18 -1.28 16 4 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 1.21 5.31 -3.71 -0.02 1.19 16 6 N -0.61 -6.09 2.97 -172.76 -0.51 -6.60 16 7 C 0.53 5.86 7.22 -10.99 -0.08 5.78 16 8 O -0.54 -7.99 15.32 5.56 0.09 -7.90 16 9 C -0.14 -1.12 2.72 -90.96 -0.25 -1.36 16 10 C -0.12 -0.89 7.16 -25.83 -0.18 -1.08 16 11 C -0.14 -0.90 8.09 -25.83 -0.21 -1.11 16 12 C -0.12 -0.93 7.40 -25.92 -0.19 -1.12 16 13 C 0.11 0.87 6.31 -3.71 -0.02 0.85 16 14 C -0.12 -1.28 5.59 -26.61 -0.15 -1.42 16 15 C 0.09 1.08 1.95 -67.67 -0.13 0.95 16 16 H 0.04 0.49 7.80 -51.93 -0.41 0.08 16 17 N -0.67 -10.33 5.93 -107.95 -0.64 -10.97 16 18 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 19 C 0.44 10.25 7.82 -10.98 -0.09 10.17 16 20 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 21 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 26 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.50 6.68 -51.93 -0.35 0.16 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.87 6.00 -51.93 -0.31 0.56 16 35 H 0.10 1.10 5.71 -51.93 -0.30 0.80 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.69 7.56 -51.93 -0.39 0.30 16 38 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16 39 H 0.08 0.48 7.88 -51.93 -0.41 0.07 16 40 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.91 7.45 -51.93 -0.39 0.52 16 44 H 0.09 0.56 5.36 -51.93 -0.28 0.29 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.81 7.41 -51.93 -0.38 0.42 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.35 5.74 5.73 -39.29 -0.23 5.52 16 49 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 50 H 0.08 1.32 7.39 -51.93 -0.38 0.94 16 51 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -32.45 402.77 -9.55 -41.99 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.72 Total: 13.01 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.56 Total: 1.93 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.49 Total: -55.39 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.45 -9.55 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323127536.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.089 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds