Wall clock time and date at job start Tue Mar 31 2020 20:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32997 * 119.99868 * 2 1 4 4 C 1.50695 * 119.99738 * 180.02562 * 3 2 1 5 5 C 1.47096 * 120.00026 * 0.02562 * 3 2 1 6 6 O 1.21606 * 120.00521 * 100.59375 * 5 3 2 7 7 N 1.34780 * 119.99634 * 280.59748 * 5 3 2 8 8 C 1.46929 * 120.63196 * 355.40527 * 7 5 3 9 9 C 1.53188 * 108.77968 * 233.58912 * 8 7 5 10 10 C 1.53042 * 109.33829 * 305.34983 * 9 8 7 11 11 H 1.08999 * 109.45859 * 301.35780 * 10 9 8 12 12 N 1.46903 * 109.45789 * 181.40121 * 10 9 8 13 13 C 1.46896 * 111.00093 * 84.99738 * 12 10 9 14 14 C 1.50701 * 109.47166 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99950 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00097 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00365 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99688 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00306 * 180.02562 * 17 16 14 20 20 N 1.31419 * 119.99904 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00127 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47062 * 89.99987 * 21 19 17 23 23 H 1.48496 * 109.47405 * 209.99924 * 21 19 17 24 24 H 1.48496 * 109.47146 * 330.00062 * 21 19 17 25 25 C 1.53106 * 109.50272 * 61.34906 * 10 9 8 26 26 H 1.09002 * 109.51389 * 178.68154 * 25 10 9 27 27 C 1.52998 * 109.48906 * 58.61071 * 25 10 9 28 28 C 1.53008 * 109.47023 * 175.14480 * 27 25 10 29 29 C 1.46925 * 120.63297 * 175.38897 * 7 5 3 30 30 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46985 * 299.99609 * 1 2 3 32 32 H 1.09000 * 109.47292 * 59.99860 * 1 2 3 33 33 H 1.08000 * 120.00102 * 180.02562 * 2 1 3 34 34 H 1.09004 * 109.47132 * 275.34821 * 4 3 2 35 35 H 1.08994 * 109.47426 * 35.34720 * 4 3 2 36 36 H 1.08998 * 109.47123 * 155.34665 * 4 3 2 37 37 H 1.08999 * 109.58329 * 113.79995 * 8 7 5 38 38 H 1.08994 * 109.58461 * 353.38279 * 8 7 5 39 39 H 1.09000 * 109.49272 * 65.31679 * 9 8 7 40 40 H 1.08995 * 109.49623 * 185.38084 * 9 8 7 41 41 H 1.00905 * 110.99677 * 321.04523 * 12 10 9 42 42 H 1.08991 * 109.47306 * 300.00259 * 13 12 10 43 43 H 1.09007 * 109.46876 * 60.00244 * 13 12 10 44 44 H 0.97004 * 120.00027 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99436 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.47534 * 295.14535 * 27 25 10 47 47 H 1.08998 * 109.47247 * 55.14888 * 27 25 10 48 48 H 1.09004 * 109.46876 * 300.00160 * 28 27 25 49 49 H 1.08998 * 109.46776 * 60.00119 * 28 27 25 50 50 H 1.08998 * 109.47244 * 180.02562 * 28 27 25 51 51 H 1.08995 * 109.58929 * 246.19916 * 29 7 5 52 52 H 1.09003 * 109.58506 * 6.47829 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.3005 3.0489 1.0359 7 7 0.9132 2.9021 -1.1465 8 6 1.1539 2.2136 -2.4219 9 6 1.7200 3.2213 -3.4272 10 6 0.7747 4.4205 -3.5297 11 1 -0.2123 4.0792 -3.8419 12 7 1.2981 5.3732 -4.5180 13 6 0.8781 5.0059 -5.8769 14 6 1.4321 6.0040 -6.8608 15 8 2.1105 6.9299 -6.4686 16 7 1.1739 5.8678 -8.1765 17 6 1.6782 6.7754 -9.0717 18 1 2.2830 7.5994 -8.7226 19 6 1.4115 6.6353 -10.4281 20 7 1.8946 7.5057 -11.2861 21 14 0.3651 5.2106 -11.0319 22 1 -1.0632 5.6169 -11.0466 23 1 0.7866 4.8339 -12.4051 24 1 0.5398 4.0485 -10.1242 25 6 0.6690 5.1062 -2.1649 26 1 0.0142 5.9741 -2.2431 27 6 2.0592 5.5547 -1.7100 28 6 1.9386 6.3455 -0.4056 29 6 0.0910 4.1197 -1.1453 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.0471 -0.9353 -0.0004 34 1 4.0427 1.0557 1.0225 35 1 4.0421 0.3137 -0.5954 36 1 4.0421 2.0858 -0.4292 37 1 0.2160 1.8074 -2.8005 38 1 1.8700 1.4058 -2.2716 39 1 2.7005 3.5586 -3.0912 40 1 1.8135 2.7472 -4.4042 41 1 2.3028 5.4427 -4.4563 42 1 1.2539 4.0114 -6.1170 43 1 -0.2105 5.0064 -5.9334 44 1 0.6310 5.1275 -8.4902 45 1 1.7081 7.4080 -12.2330 46 1 2.6883 4.6796 -1.5474 47 1 2.5066 6.1862 -2.4776 48 1 1.3095 7.2207 -0.5683 49 1 1.4913 5.7141 0.3620 50 1 2.9289 6.6655 -0.0818 51 1 -0.9336 3.8691 -1.4197 52 1 0.1037 4.5683 -0.1519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323129088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:16 Heat of formation + Delta-G solvation = -82.883658 kcal Electronic energy + Delta-G solvation = -30456.031254 eV Core-core repulsion = 26454.505031 eV Total energy + Delta-G solvation = -4001.526223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69479 -40.32433 -39.32740 -36.47958 -36.28545 -35.71986 -34.74608 -33.72785 -31.98527 -31.14449 -30.45528 -28.51065 -26.65031 -25.60035 -25.02199 -24.42526 -23.39866 -22.74942 -21.27907 -20.32884 -20.04886 -19.05146 -17.87656 -17.44932 -17.07183 -16.76744 -16.54102 -16.35055 -16.04131 -15.87266 -15.51964 -15.33114 -15.03410 -14.92935 -14.57818 -14.45085 -14.36851 -14.23644 -13.95375 -13.80375 -13.60270 -13.41687 -13.37807 -13.19512 -13.06882 -12.89388 -12.73853 -12.62690 -12.48117 -12.40374 -12.39357 -12.21291 -11.96415 -11.60202 -11.51067 -11.48854 -11.18663 -10.81042 -10.40022 -10.23028 -9.84682 -9.66817 -9.20481 -8.39752 -6.00807 0.83304 1.31198 1.37793 1.46384 1.57657 1.98974 2.09519 2.24883 2.75131 3.16910 3.41642 3.50094 3.71582 3.86442 3.96688 4.00688 4.06874 4.12053 4.22156 4.32582 4.36702 4.45815 4.46952 4.52296 4.57246 4.58876 4.65358 4.67238 4.70590 4.74884 4.78432 4.80503 4.82031 4.93447 4.97812 5.02619 5.06285 5.13129 5.20753 5.27165 5.35562 5.43764 5.49144 5.54911 5.59729 5.67334 5.93852 6.13059 6.37992 6.42386 6.61939 6.90423 7.13364 7.42279 7.99822 8.78092 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.002446 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.326792 B =11445.974564 C =12263.821817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.189 4.189 4 C -0.101 4.101 5 C 0.558 3.442 6 O -0.586 6.586 7 N -0.596 5.596 8 C 0.115 3.885 9 C -0.164 4.164 10 C 0.098 3.902 11 H 0.098 0.902 12 N -0.679 5.679 13 C 0.063 3.937 14 C 0.448 3.552 15 O -0.617 6.617 16 N -0.591 5.591 17 C -0.328 4.328 18 H 0.052 0.948 19 C -0.018 4.018 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.227 1.227 25 C -0.082 4.082 26 H 0.082 0.918 27 C -0.109 4.109 28 C -0.149 4.149 29 C 0.115 3.885 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.342 0.658 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.087 0.913 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -22.990 20.653 31.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C -0.192 4.192 4 C -0.158 4.158 5 C 0.347 3.653 6 O -0.467 6.467 7 N -0.328 5.328 8 C -0.007 4.007 9 C -0.204 4.204 10 C -0.012 4.012 11 H 0.116 0.884 12 N -0.310 5.310 13 C -0.069 4.069 14 C 0.236 3.764 15 O -0.501 6.501 16 N -0.233 5.233 17 C -0.457 4.457 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.150 1.150 25 C -0.101 4.101 26 H 0.101 0.899 27 C -0.146 4.146 28 C -0.206 4.206 29 C -0.008 4.008 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.105 0.895 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.747 -21.487 21.312 30.805 hybrid contribution 0.514 -0.359 -0.919 1.112 sum -5.234 -21.846 20.393 30.340 Atomic orbital electron populations 1.21024 0.92610 1.03966 1.01863 1.23598 0.96532 0.97108 0.94625 1.21491 0.97580 0.92303 1.07858 1.20668 0.88936 1.03256 1.02973 1.18983 0.77704 0.85681 0.82890 1.90768 1.61462 1.60917 1.33562 1.48143 1.50454 1.26713 1.07463 1.21820 1.02603 0.94615 0.81692 1.22682 0.99908 0.97281 1.00487 1.21638 0.99044 0.89510 0.91016 0.88418 1.60145 1.17896 1.50419 1.02505 1.21669 1.02215 0.95327 0.87657 1.21101 0.83838 0.88421 0.83077 1.90556 1.43696 1.36823 1.79028 1.42027 1.48649 1.26492 1.06138 1.18991 1.31044 1.07265 0.88432 0.92939 1.26159 0.99051 1.01388 0.95004 1.69820 1.46263 1.38140 1.03529 0.85335 0.78604 0.78369 0.79004 1.18256 1.20221 1.15020 1.21453 0.97249 0.98031 0.93413 0.89926 1.21412 0.97062 0.99192 0.96951 1.21769 1.01265 1.00007 0.97564 1.21730 0.94176 0.84555 1.00353 0.89404 0.93146 0.90754 0.83196 0.91179 0.88535 0.92972 0.88951 0.88318 0.91993 0.89247 0.83846 0.90204 0.86692 0.77404 0.91208 0.92871 0.92743 0.92671 0.93004 0.93471 0.89503 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.16 71.24 0.65 -0.73 16 2 C -0.10 -1.02 9.71 24.52 0.24 -0.78 16 3 C -0.19 -2.83 3.83 -18.71 -0.07 -2.90 16 4 C -0.10 -1.25 10.02 71.23 0.71 -0.54 16 5 C 0.56 11.62 5.90 86.57 0.51 12.13 16 6 O -0.59 -17.44 16.52 -4.05 -0.07 -17.51 16 7 N -0.60 -9.73 2.21 -823.20 -1.82 -11.55 16 8 C 0.12 1.27 5.61 86.36 0.48 1.75 16 9 C -0.16 -2.31 4.99 30.67 0.15 -2.16 16 10 C 0.10 1.75 2.13 44.96 0.10 1.84 16 11 H 0.10 1.44 7.80 -2.39 -0.02 1.42 16 12 N -0.68 -18.07 5.43 -495.33 -2.69 -20.76 16 13 C 0.06 1.74 5.96 85.56 0.51 2.25 16 14 C 0.45 19.47 7.82 87.66 0.69 20.16 16 15 O -0.62 -33.75 15.78 -3.09 -0.05 -33.80 16 16 N -0.59 -27.04 5.09 -306.99 -1.56 -28.60 16 17 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 18 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 19 C -0.02 -0.98 5.50 84.92 0.47 -0.51 16 20 N -0.94 -56.31 13.96 21.66 0.30 -56.01 16 21 Si 0.97 37.81 27.74 68.60 1.90 39.71 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 23 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 25 C -0.08 -1.59 2.38 -10.69 -0.03 -1.62 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 C -0.11 -2.48 4.67 30.60 0.14 -2.34 16 28 C -0.15 -3.46 9.68 71.98 0.70 -2.77 16 29 C 0.11 2.02 5.70 86.36 0.49 2.51 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.72 8.09 -2.39 -0.02 0.71 16 32 H 0.07 0.70 7.24 -2.39 -0.02 0.68 16 33 H 0.15 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.69 8.11 -2.39 -0.02 0.67 16 36 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 38 H 0.10 0.90 6.23 -2.39 -0.01 0.88 16 39 H 0.06 1.07 6.45 -2.39 -0.02 1.06 16 40 H 0.09 1.08 7.42 -2.39 -0.02 1.06 16 41 H 0.34 10.26 7.34 -89.69 -0.66 9.60 16 42 H 0.08 1.68 7.41 -2.39 -0.02 1.66 16 43 H 0.12 2.60 8.06 -2.38 -0.02 2.58 16 44 H 0.39 14.49 5.76 -92.71 -0.53 13.95 16 45 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.05 1.23 6.12 -2.39 -0.01 1.21 16 47 H 0.05 1.46 7.01 -2.39 -0.02 1.44 16 48 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.05 1.28 6.46 -2.39 -0.02 1.27 16 50 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.08 1.75 5.20 -2.39 -0.01 1.74 16 Total: -1.00 -81.45 404.15 2.30 -79.15 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -0.32 Total: 41.24 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.60 Total: 8.14 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -5.77 Total: -116.92 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.12 Total: -51.31 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Total: -81.45 2.30 -79.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323129088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.736 kcal (2) G-P(sol) polarization free energy of solvation -81.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds