Wall clock time and date at job start Tue Mar 31 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32993 * 120.00348 * 2 1 4 4 C 1.50706 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.47094 * 120.00277 * 180.02562 * 3 2 1 6 6 O 1.21611 * 120.00359 * 261.94162 * 5 3 2 7 7 N 1.34773 * 120.00296 * 81.94390 * 5 3 2 8 8 C 1.46936 * 120.62754 * 354.97803 * 7 5 3 9 9 C 1.53189 * 108.77379 * 233.58929 * 8 7 5 10 10 C 1.53039 * 109.31455 * 305.36663 * 9 8 7 11 11 H 1.08999 * 109.45887 * 301.34496 * 10 9 8 12 12 N 1.46903 * 109.46016 * 181.38698 * 10 9 8 13 13 C 1.46899 * 110.99860 * 84.92946 * 12 10 9 14 14 C 1.50701 * 109.47084 * 179.97438 * 13 12 10 15 15 O 1.21289 * 119.99857 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00228 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00556 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99577 * 0.02562 * 17 16 14 19 19 C 1.38940 * 120.00512 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00278 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46756 * 90.00196 * 21 19 17 23 23 H 1.48504 * 109.47397 * 210.00155 * 21 19 17 24 24 H 1.48495 * 109.47189 * 330.00400 * 21 19 17 25 25 C 1.53035 * 109.54059 * 61.36748 * 10 9 8 26 26 H 1.08999 * 109.52671 * 178.67042 * 25 10 9 27 27 C 1.52995 * 109.49792 * 58.58711 * 25 10 9 28 28 C 1.53005 * 109.47251 * 175.16567 * 27 25 10 29 29 C 1.46922 * 120.63610 * 174.96247 * 7 5 3 30 30 H 1.08992 * 109.47497 * 59.99189 * 1 2 3 31 31 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46888 * 299.99143 * 1 2 3 33 33 H 1.08001 * 119.99710 * 180.02562 * 2 1 3 34 34 H 1.08991 * 109.47131 * 275.50815 * 4 3 2 35 35 H 1.09001 * 109.46967 * 35.50761 * 4 3 2 36 36 H 1.09004 * 109.46804 * 155.50166 * 4 3 2 37 37 H 1.09000 * 109.58182 * 353.37392 * 8 7 5 38 38 H 1.08993 * 109.58281 * 113.80175 * 8 7 5 39 39 H 1.09003 * 109.49948 * 65.32129 * 9 8 7 40 40 H 1.08999 * 109.49978 * 185.37844 * 9 8 7 41 41 H 1.00896 * 111.00108 * 320.97925 * 12 10 9 42 42 H 1.08997 * 109.47654 * 299.99990 * 13 12 10 43 43 H 1.09008 * 109.47160 * 60.00113 * 13 12 10 44 44 H 0.97007 * 119.99688 * 0.02562 * 16 14 13 45 45 H 0.97000 * 120.00391 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.47233 * 55.16130 * 27 25 10 47 47 H 1.09001 * 109.47285 * 295.15989 * 27 25 10 48 48 H 1.08996 * 109.47358 * 59.99640 * 28 27 25 49 49 H 1.08997 * 109.47416 * 180.02562 * 28 27 25 50 50 H 1.09001 * 109.46504 * 299.99901 * 28 27 25 51 51 H 1.09003 * 109.58412 * 6.62097 * 29 7 5 52 52 H 1.09007 * 109.70293 * 246.26597 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2515 1.2991 1.0420 7 7 4.3164 0.9884 -1.1565 8 6 3.5995 0.7000 -2.4062 9 6 4.1962 -0.5622 -3.0369 10 6 5.7060 -0.3781 -3.2064 11 1 5.8974 0.4925 -3.8337 12 7 6.2765 -1.5736 -3.8415 13 6 6.1648 -1.4968 -5.3042 14 6 6.7597 -2.7373 -5.9192 15 8 7.2308 -3.6003 -5.2090 16 7 6.7691 -2.8874 -7.2586 17 6 7.3108 -4.0157 -7.8182 18 1 7.7295 -4.7845 -7.1857 19 6 7.3200 -4.1706 -9.1989 20 7 6.8100 -3.2355 -9.9685 21 14 8.0587 -5.7077 -9.9614 22 1 7.0061 -6.7458 -10.1011 23 1 8.6112 -5.3797 -11.3003 24 1 9.1460 -6.2195 -9.0891 25 6 6.3535 -0.1709 -1.8354 26 1 7.4317 -0.0634 -1.9542 27 6 6.0559 -1.3772 -0.9426 28 6 6.8022 -1.2259 0.3846 29 6 5.7813 1.0957 -1.1911 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.0469 -0.9353 -0.0004 34 1 1.1510 2.7224 -1.0221 35 1 0.5126 2.3531 0.5978 36 1 2.0469 3.2390 0.4267 37 1 2.5432 0.5372 -2.1922 38 1 3.7104 1.5390 -3.0930 39 1 4.0044 -1.4179 -2.3895 40 1 3.7384 -0.7334 -4.0111 41 1 5.8410 -2.4129 -3.4892 42 1 5.1144 -1.4196 -5.5849 43 1 6.7025 -0.6195 -5.6641 44 1 6.3933 -2.1967 -7.8267 45 1 6.8168 -3.3434 -10.9325 46 1 6.3840 -2.2887 -1.4421 47 1 4.9841 -1.4328 -0.7522 48 1 6.4742 -0.3144 0.8841 49 1 6.5906 -2.0855 1.0205 50 1 7.8740 -1.1704 0.1943 51 1 6.1645 1.1941 -0.1754 52 1 6.0722 1.9673 -1.7775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323129089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:19 Heat of formation + Delta-G solvation = -87.895524 kcal Electronic energy + Delta-G solvation = -30204.245685 eV Core-core repulsion = 26202.502131 eV Total energy + Delta-G solvation = -4001.743554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67679 -40.20464 -39.29784 -36.68884 -36.30997 -35.72214 -34.84901 -33.25904 -31.98271 -30.68709 -30.08047 -28.42488 -27.26433 -26.15643 -25.03413 -24.44456 -23.35345 -22.19203 -21.10197 -19.98623 -19.88205 -19.07095 -18.03552 -17.60258 -17.11046 -16.93301 -16.60415 -16.30344 -16.12228 -15.70979 -15.57959 -15.41859 -15.14277 -15.06228 -14.61894 -14.34843 -14.11125 -14.08801 -13.63382 -13.50577 -13.44909 -13.41344 -13.32392 -13.20769 -13.05180 -12.90320 -12.87865 -12.70732 -12.46976 -12.40569 -12.27854 -12.18769 -12.12415 -11.62569 -11.52257 -11.49672 -11.20801 -10.84040 -10.31836 -10.00215 -9.88886 -9.68213 -9.21745 -8.46078 -5.94355 0.82260 1.37967 1.41993 1.53311 1.54442 2.05447 2.07508 2.29518 2.92657 3.21620 3.45865 3.52274 3.70274 3.84576 3.98687 4.00647 4.06566 4.11678 4.30770 4.35632 4.39081 4.44500 4.46862 4.49773 4.55030 4.61092 4.64000 4.68121 4.72563 4.73514 4.79592 4.84339 4.90916 4.92906 4.96784 5.04167 5.06542 5.14636 5.19303 5.24889 5.33077 5.41685 5.42845 5.49080 5.59254 5.67829 5.93028 6.15834 6.35295 6.42708 6.61780 7.09165 7.14136 7.58283 8.14043 8.71270 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002263 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.914698 B =12369.657364 C =13074.292975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C -0.181 4.181 4 C -0.101 4.101 5 C 0.553 3.447 6 O -0.585 6.585 7 N -0.597 5.597 8 C 0.114 3.886 9 C -0.163 4.163 10 C 0.097 3.903 11 H 0.092 0.908 12 N -0.674 5.674 13 C 0.067 3.933 14 C 0.437 3.563 15 O -0.625 6.625 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.275 1.275 25 C -0.082 4.082 26 H 0.083 0.917 27 C -0.108 4.108 28 C -0.148 4.148 29 C 0.114 3.886 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.342 0.658 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 13.752 15.269 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.130 4.130 3 C -0.184 4.184 4 C -0.157 4.157 5 C 0.343 3.657 6 O -0.465 6.465 7 N -0.328 5.328 8 C -0.009 4.009 9 C -0.202 4.202 10 C -0.013 4.013 11 H 0.110 0.890 12 N -0.305 5.305 13 C -0.066 4.066 14 C 0.225 3.775 15 O -0.512 6.512 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.101 4.101 26 H 0.101 0.899 27 C -0.146 4.146 28 C -0.206 4.206 29 C -0.009 4.009 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.195 13.509 16.050 24.783 hybrid contribution -0.267 -0.921 -0.824 1.265 sum -13.462 12.588 15.226 23.906 Atomic orbital electron populations 1.20938 0.89919 1.03659 1.03397 1.23415 0.98047 0.95886 0.95674 1.21420 0.91166 0.98581 1.07209 1.20716 0.99519 0.91781 1.03711 1.19069 0.88931 0.74881 0.82826 1.90770 1.70939 1.52045 1.32786 1.48168 1.07240 1.68969 1.08418 1.21834 0.97153 0.97414 0.84460 1.22664 0.96837 0.98759 1.01986 1.21622 0.91589 0.93199 0.94907 0.88974 1.60159 1.62199 1.05152 1.03001 1.21564 1.00124 0.95603 0.89267 1.20970 0.84165 0.90040 0.82332 1.90498 1.52401 1.46436 1.61818 1.41931 1.53651 1.19867 1.05654 1.19629 1.36986 0.98642 0.90946 0.90536 1.25994 0.97538 1.01669 0.95998 1.69661 1.45763 1.34892 1.05757 0.84967 0.78431 0.77650 0.77536 1.19586 1.19539 1.19980 1.21442 1.00636 0.94347 0.93704 0.89859 1.21410 0.99533 0.98133 0.95499 1.21767 1.00415 1.01246 0.97144 1.21744 0.79157 0.97582 1.02407 0.89407 0.91057 0.90247 0.87969 0.89019 0.89423 0.92962 0.88140 0.89164 0.91820 0.89602 0.83849 0.91206 0.87787 0.76918 0.91311 0.92590 0.92962 0.93033 0.93309 0.92564 0.90001 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.98 71.24 0.64 -0.33 16 2 C -0.11 -1.51 9.05 24.52 0.22 -1.29 16 3 C -0.18 -2.91 4.20 -18.70 -0.08 -2.99 16 4 C -0.10 -1.12 9.45 71.24 0.67 -0.45 16 5 C 0.55 12.41 7.04 86.57 0.61 13.02 16 6 O -0.58 -18.08 16.52 -4.07 -0.07 -18.15 16 7 N -0.60 -10.99 2.33 -823.18 -1.92 -12.91 16 8 C 0.11 1.53 6.31 86.36 0.54 2.08 16 9 C -0.16 -2.72 4.99 30.67 0.15 -2.56 16 10 C 0.10 2.00 2.13 44.94 0.10 2.09 16 11 H 0.09 1.71 7.80 -2.39 -0.02 1.69 16 12 N -0.67 -19.71 5.42 -495.43 -2.69 -22.39 16 13 C 0.07 2.11 5.96 85.56 0.51 2.62 16 14 C 0.44 20.25 7.82 87.66 0.69 20.94 16 15 O -0.63 -34.31 15.78 -3.06 -0.05 -34.36 16 16 N -0.57 -28.84 5.29 -306.99 -1.62 -30.46 16 17 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 20 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 21 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 C -0.08 -1.74 2.38 -10.72 -0.03 -1.76 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 C -0.11 -2.58 4.67 30.59 0.14 -2.44 16 28 C -0.15 -3.53 9.68 71.98 0.70 -2.84 16 29 C 0.11 2.22 5.70 86.36 0.49 2.71 16 30 H 0.09 0.46 8.10 -2.39 -0.02 0.44 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.55 7.41 -2.38 -0.02 0.53 16 33 H 0.10 1.61 8.05 -2.91 -0.02 1.58 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.72 6.72 -2.39 -0.02 0.70 16 36 H 0.05 0.73 8.08 -2.38 -0.02 0.71 16 37 H 0.10 1.12 5.72 -2.39 -0.01 1.10 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.22 6.45 -2.39 -0.02 1.20 16 40 H 0.09 1.33 7.42 -2.39 -0.02 1.31 16 41 H 0.34 10.93 7.34 -89.70 -0.66 10.27 16 42 H 0.07 1.87 7.41 -2.39 -0.02 1.85 16 43 H 0.10 2.96 8.06 -2.38 -0.02 2.94 16 44 H 0.40 18.79 7.90 -92.70 -0.73 18.06 16 45 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 46 H 0.06 1.54 7.00 -2.39 -0.02 1.52 16 47 H 0.05 1.26 6.12 -2.39 -0.01 1.24 16 48 H 0.05 1.31 6.46 -2.39 -0.02 1.29 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.08 1.91 5.19 -2.39 -0.01 1.90 16 52 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -72.14 406.49 2.15 -69.99 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -0.45 Total: 41.55 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.64 Total: 10.71 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -5.95 Total: -114.44 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.12 Total: -52.51 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.14 2.15 -69.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323129089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.906 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds