Wall clock time and date at job start Tue Mar 31 2020 20:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32997 * 120.00443 * 2 1 4 4 C 1.50695 * 120.00324 * 179.97438 * 3 2 1 5 5 C 1.47106 * 119.99664 * 359.97438 * 3 2 1 6 6 O 1.21608 * 120.00136 * 262.58373 * 5 3 2 7 7 N 1.34776 * 119.99852 * 82.58007 * 5 3 2 8 8 C 1.46926 * 120.63009 * 175.26083 * 7 5 3 9 9 C 1.53195 * 108.77380 * 233.62870 * 8 7 5 10 10 C 1.53039 * 109.31391 * 305.36798 * 9 8 7 11 11 H 1.08997 * 109.45474 * 301.33976 * 10 9 8 12 12 N 1.46905 * 109.44385 * 181.37927 * 10 9 8 13 13 C 1.46900 * 110.99996 * 84.93972 * 12 10 9 14 14 C 1.50702 * 109.46974 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99796 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00029 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00075 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99868 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99964 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99940 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00026 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46982 * 89.99974 * 21 19 17 23 23 H 1.48496 * 109.47142 * 210.00116 * 21 19 17 24 24 H 1.48495 * 109.47072 * 329.99992 * 21 19 17 25 25 C 1.53032 * 109.54066 * 61.36465 * 10 9 8 26 26 H 1.09000 * 109.50011 * 58.58618 * 25 10 9 27 27 C 1.52998 * 109.50193 * 178.68318 * 25 10 9 28 28 C 1.52992 * 109.47604 * 184.84136 * 27 25 10 29 29 C 1.46929 * 120.63150 * 355.28170 * 7 5 3 30 30 H 1.08998 * 109.47556 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47076 * 300.00405 * 1 2 3 32 32 H 1.09005 * 109.46600 * 60.00077 * 1 2 3 33 33 H 1.08005 * 119.99631 * 179.97438 * 2 1 3 34 34 H 1.08992 * 109.47286 * 275.03677 * 4 3 2 35 35 H 1.09007 * 109.47108 * 35.03797 * 4 3 2 36 36 H 1.09003 * 109.47070 * 155.02993 * 4 3 2 37 37 H 1.08994 * 109.58419 * 353.41870 * 8 7 5 38 38 H 1.08999 * 109.58351 * 113.84797 * 8 7 5 39 39 H 1.09002 * 109.49358 * 65.32009 * 9 8 7 40 40 H 1.09000 * 109.49567 * 185.41033 * 9 8 7 41 41 H 1.00900 * 111.00153 * 320.98029 * 12 10 9 42 42 H 1.08997 * 109.47117 * 299.99336 * 13 12 10 43 43 H 1.08998 * 109.47031 * 59.99733 * 13 12 10 44 44 H 0.96998 * 119.99702 * 0.02562 * 16 14 13 45 45 H 0.96996 * 119.99856 * 179.97438 * 20 19 17 46 46 H 1.09009 * 109.46869 * 304.84011 * 27 25 10 47 47 H 1.09000 * 109.47110 * 64.83533 * 27 25 10 48 48 H 1.09009 * 109.46836 * 299.99301 * 28 27 25 49 49 H 1.08991 * 109.47453 * 59.99849 * 28 27 25 50 50 H 1.09002 * 109.47478 * 180.02562 * 28 27 25 51 51 H 1.08994 * 109.58859 * 246.15811 * 29 7 5 52 52 H 1.09004 * 109.58771 * 6.44333 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4366 2.4257 -0.0006 6 8 1.2507 3.0201 -1.0451 7 7 0.9687 2.9342 1.1566 8 6 0.3236 4.2539 1.1877 9 6 1.0196 5.1180 2.2440 10 6 1.0107 4.3822 3.5859 11 1 -0.0182 4.1723 3.8780 12 7 1.6481 5.2224 4.6086 13 6 0.6845 6.1666 5.1897 14 6 1.3730 7.0089 6.2326 15 8 2.5504 6.8390 6.4688 16 7 0.6803 7.9510 6.9028 17 6 1.3065 8.7169 7.8519 18 1 2.3550 8.5656 8.0622 19 6 0.5923 9.6878 8.5432 20 7 1.1927 10.4223 9.4526 21 14 -1.2210 9.9499 8.1789 22 1 -2.0347 9.0765 9.0624 23 1 -1.5751 11.3708 8.4255 24 1 -1.4948 9.6108 6.7594 25 6 1.7817 3.0669 3.4535 26 1 2.8039 3.2746 3.1373 27 6 1.8003 2.3477 4.8038 28 6 2.6717 1.0943 4.7020 29 6 1.0943 2.1795 2.4110 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.0470 -0.9354 0.0004 34 1 4.0420 1.0617 1.0244 35 1 4.0426 0.3101 -0.5891 36 1 4.0426 2.0832 -0.4333 37 1 0.4140 4.7279 0.2104 38 1 -0.7294 4.1399 1.4449 39 1 2.0490 5.3065 1.9392 40 1 0.4904 6.0656 2.3451 41 1 2.4475 5.7084 4.2305 42 1 0.2888 6.8112 4.4049 43 1 -0.1330 5.6131 5.6519 44 1 -0.2614 8.0866 6.7141 45 1 0.6941 11.1003 9.9350 46 1 2.2086 3.0133 5.5644 47 1 0.7845 2.0628 5.0777 48 1 2.2633 0.4286 3.9415 49 1 3.6874 1.3791 4.4282 50 1 2.6846 0.5816 5.6639 51 1 0.1042 1.8964 2.7678 52 1 1.6912 1.2836 2.2402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323129091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:23 Heat of formation + Delta-G solvation = -63.431353 kcal Electronic energy + Delta-G solvation = -30278.834749 eV Core-core repulsion = 26278.152041 eV Total energy + Delta-G solvation = -4000.682708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79513 -38.89735 -38.06846 -35.79566 -35.12927 -34.33807 -33.88358 -31.70716 -31.19882 -30.59362 -29.38364 -27.10137 -25.48971 -24.83488 -24.32973 -23.50377 -22.09005 -21.00569 -20.45134 -19.38621 -18.69352 -18.23406 -16.97156 -16.13094 -16.00983 -15.94720 -15.31146 -15.06107 -14.92506 -14.72328 -14.38379 -14.27529 -14.02487 -13.87453 -13.64622 -13.49386 -13.28214 -13.18486 -13.06029 -12.71340 -12.61469 -12.45882 -12.31194 -12.25195 -12.18764 -11.96817 -11.91761 -11.78150 -11.59867 -11.26974 -11.16991 -10.78463 -10.65013 -10.61335 -10.55650 -10.05692 -9.99024 -9.58848 -9.27672 -8.95486 -8.60287 -8.20448 -8.11589 -6.32559 -3.84045 1.39499 2.31210 2.77216 3.00746 3.05256 3.13677 3.72327 3.99684 4.08840 4.14961 4.40047 4.48897 4.61088 4.71734 4.77911 4.81005 4.95737 4.98236 5.06003 5.07954 5.16335 5.19609 5.21205 5.25783 5.28076 5.30666 5.35039 5.41735 5.44139 5.50206 5.60188 5.60671 5.63754 5.69835 5.76016 5.79862 5.85546 5.90150 5.96632 6.01382 6.05676 6.18539 6.23533 6.30018 6.50426 7.08273 7.09338 7.53769 7.56981 7.86821 8.13028 8.58170 8.93562 9.40948 9.81126 10.80582 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.002351 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.159032 B =11908.239136 C =12429.244495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C -0.164 4.164 4 C -0.105 4.105 5 C 0.561 3.439 6 O -0.541 6.541 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.167 4.167 10 C 0.092 3.908 11 H 0.078 0.922 12 N -0.658 5.658 13 C 0.048 3.952 14 C 0.450 3.550 15 O -0.564 6.564 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.086 4.086 26 H 0.076 0.924 27 C -0.112 4.112 28 C -0.154 4.154 29 C 0.110 3.890 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.069 0.931 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -21.713 -17.558 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C -0.166 4.166 4 C -0.162 4.162 5 C 0.350 3.650 6 O -0.419 6.419 7 N -0.338 5.338 8 C -0.007 4.007 9 C -0.207 4.207 10 C -0.019 4.019 11 H 0.097 0.903 12 N -0.289 5.289 13 C -0.085 4.085 14 C 0.236 3.764 15 O -0.446 6.446 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.106 4.106 26 H 0.094 0.906 27 C -0.150 4.150 28 C -0.211 4.211 29 C -0.013 4.013 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.142 -21.766 -17.263 27.958 hybrid contribution -1.621 1.086 -0.802 2.110 sum -4.762 -20.680 -18.065 27.869 Atomic orbital electron populations 1.20996 0.92727 1.02972 1.02669 1.23317 0.96337 0.96844 0.97405 1.21465 0.97099 0.92898 1.05183 1.20677 0.89554 1.03316 1.02660 1.18567 0.78006 0.85191 0.83275 1.90801 1.58484 1.61341 1.31246 1.48160 1.58651 1.19120 1.07828 1.21553 0.95968 0.82485 1.00738 1.22728 1.02122 0.99386 0.96450 1.21615 0.98369 0.93073 0.88838 0.90339 1.60163 1.09028 1.25585 1.34132 1.21737 0.95542 0.94432 0.96783 1.19715 0.87982 0.83332 0.85415 1.90568 1.15912 1.70002 1.68143 1.42214 1.10906 1.33484 1.36446 1.19426 0.98381 1.12898 1.12638 0.86299 1.25045 0.98439 0.96378 0.96337 1.69622 1.36595 1.21994 1.23913 0.86668 0.85206 0.78891 0.78583 1.19605 1.20202 1.19553 1.21481 0.99845 0.94111 0.95148 0.90587 1.21447 0.99981 0.96618 0.96968 1.21840 1.00107 0.97860 1.01298 1.21973 1.01192 0.95017 0.83098 0.91289 0.91186 0.91160 0.85676 0.90696 0.90928 0.91454 0.89051 0.91367 0.91062 0.90456 0.82872 0.93824 0.89542 0.79726 0.91611 0.89038 0.92508 0.93378 0.92796 0.92787 0.91279 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.16 36.01 0.33 -0.58 16 2 C -0.12 -0.82 9.41 -36.13 -0.34 -1.16 16 3 C -0.16 -1.42 3.98 -102.85 -0.41 -1.83 16 4 C -0.11 -0.75 10.02 36.00 0.36 -0.39 16 5 C 0.56 6.37 5.90 -12.66 -0.07 6.29 16 6 O -0.54 -8.23 16.54 5.27 0.09 -8.14 16 7 N -0.60 -5.80 2.97 -174.16 -0.52 -6.32 16 8 C 0.12 1.11 6.42 -3.71 -0.02 1.09 16 9 C -0.17 -1.64 5.33 -26.61 -0.14 -1.78 16 10 C 0.09 0.95 1.89 -67.67 -0.13 0.82 16 11 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 12 N -0.66 -9.15 4.97 -107.95 -0.54 -9.69 16 13 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16 14 C 0.45 9.87 7.82 -10.98 -0.09 9.79 16 15 O -0.56 -14.77 15.78 5.55 0.09 -14.68 16 16 N -0.59 -13.81 5.09 -10.96 -0.06 -13.86 16 17 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 21 Si 0.88 19.18 27.74 -169.99 -4.71 14.47 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 25 C -0.09 -0.79 2.06 -90.50 -0.19 -0.98 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 C -0.11 -1.08 5.31 -26.74 -0.14 -1.22 16 28 C -0.15 -1.24 9.67 37.15 0.36 -0.88 16 29 C 0.11 0.87 4.27 -3.71 -0.02 0.85 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.47 7.11 -51.93 -0.37 0.10 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.09 1.01 7.03 -51.93 -0.37 0.64 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.75 7.42 -51.93 -0.39 0.37 16 41 H 0.35 5.30 8.18 -39.29 -0.32 4.98 16 42 H 0.04 0.59 7.41 -51.93 -0.38 0.21 16 43 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 44 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.09 1.16 7.42 -51.92 -0.39 0.77 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.32 6.70 -51.92 -0.35 -0.03 16 49 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 52 H 0.09 0.64 4.68 -51.93 -0.24 0.40 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -33.67 409.48 -8.38 -42.06 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -8.90 Total: 11.79 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.78 Total: 3.05 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.34 Total: -54.72 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.67 -8.38 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323129091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.375 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds