Wall clock time and date at job start Tue Mar 31 2020 20:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08999 * 109.47423 * 305.00368 * 3 2 1 5 5 C 1.53007 * 109.47011 * 185.00054 * 3 2 1 6 6 N 1.46896 * 109.46979 * 66.72304 * 5 3 2 7 7 C 1.48556 * 110.99847 * 172.13755 * 6 5 3 8 8 C 1.54383 * 104.59435 * 200.96184 * 7 6 5 9 9 C 1.54254 * 105.05988 * 23.85042 * 8 7 6 10 10 C 1.48564 * 111.00127 * 56.71832 * 6 5 3 11 11 N 1.46502 * 109.47025 * 65.00430 * 3 2 1 12 12 C 1.34771 * 119.99810 * 262.96007 * 11 3 2 13 13 O 1.21358 * 120.00294 * 359.97438 * 12 11 3 14 14 C 1.49452 * 120.00267 * 180.02562 * 12 11 3 15 15 O 1.21350 * 119.99855 * 354.88793 * 14 12 11 16 16 N 1.34770 * 120.00281 * 174.89383 * 14 12 11 17 17 C 1.46504 * 119.99991 * 185.38786 * 16 14 12 18 18 C 1.52999 * 109.46933 * 185.10079 * 17 16 14 19 19 C 1.50700 * 115.55134 * 57.64987 * 18 17 16 20 20 H 1.08005 * 119.99478 * 269.54751 * 19 18 17 21 21 C 1.37871 * 120.00544 * 89.54178 * 19 18 17 22 22 N 1.31513 * 120.00238 * 180.77038 * 21 19 18 23 23 Si 1.86796 * 119.99873 * 0.77714 * 21 19 18 24 24 H 1.48498 * 109.47227 * 92.54426 * 23 21 19 25 25 H 1.48497 * 109.47228 * 212.54627 * 23 21 19 26 26 H 1.48502 * 109.47332 * 332.54241 * 23 21 19 27 27 C 1.53001 * 117.50086 * 271.96867 * 18 17 16 28 28 C 1.53000 * 117.49580 * 203.30922 * 18 17 16 29 29 H 1.08996 * 109.47005 * 299.99171 * 1 2 3 30 30 H 1.08996 * 109.47222 * 59.99944 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47212 * 240.00373 * 2 1 3 33 33 H 1.09001 * 109.47539 * 120.00714 * 2 1 3 34 34 H 1.08999 * 109.46798 * 306.71807 * 5 3 2 35 35 H 1.09004 * 109.46945 * 186.72364 * 5 3 2 36 36 H 1.08997 * 110.41250 * 319.73640 * 7 6 5 37 37 H 1.08997 * 110.41290 * 82.18341 * 7 6 5 38 38 H 1.09003 * 110.32645 * 142.74789 * 8 7 6 39 39 H 1.09006 * 110.31948 * 264.95234 * 8 7 6 40 40 H 1.09002 * 110.32603 * 241.10479 * 9 8 7 41 41 H 1.08997 * 110.32450 * 118.90171 * 9 8 7 42 42 H 1.08997 * 110.41009 * 277.81654 * 10 6 5 43 43 H 1.09003 * 110.41178 * 40.14043 * 10 6 5 44 44 H 0.97001 * 120.00542 * 82.95231 * 11 3 2 45 45 H 0.97003 * 120.00386 * 5.38928 * 16 14 12 46 46 H 1.08995 * 109.47256 * 305.10463 * 17 16 14 47 47 H 1.09004 * 109.46426 * 65.10537 * 17 16 14 48 48 H 0.96997 * 120.00216 * 179.97438 * 22 21 19 49 49 H 1.08996 * 117.49800 * 0.02562 * 27 18 17 50 50 H 1.09002 * 117.49635 * 145.02524 * 27 18 17 51 51 H 1.09007 * 117.49904 * 214.98230 * 28 18 17 52 52 H 1.09000 * 117.50126 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 3.9476 0.9348 -1.4493 7 6 5.4061 1.0967 -1.6807 8 6 5.5645 1.0456 -3.2155 9 6 4.1892 1.4646 -3.7745 10 6 3.3155 1.7338 -2.5306 11 7 1.6525 2.0974 1.2519 12 6 0.5484 2.8691 1.2950 13 8 -0.1246 3.0217 0.2967 14 6 0.1533 3.5377 2.5719 15 8 0.7720 3.3127 3.5912 16 7 -0.8902 4.3904 2.5913 17 6 -1.2047 5.1354 3.8129 18 6 -2.4977 5.9274 3.6085 19 6 -3.7073 5.1112 3.2320 20 1 -3.9357 4.9327 2.1916 21 6 -4.5223 4.5924 4.2156 22 7 -5.5694 3.8674 3.8874 23 14 -4.1395 4.9194 6.0144 24 1 -4.8747 6.1282 6.4652 25 1 -4.5595 3.7517 6.8301 26 1 -2.6798 5.1380 6.1781 27 6 -2.3794 7.3315 3.0123 28 6 -2.7216 7.1550 4.4938 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9939 0.8066 0.6472 35 1 3.9381 2.4615 -0.0061 36 1 5.7478 2.0572 -1.2951 37 1 5.9579 0.2807 -1.2142 38 1 6.3344 1.7455 -3.5402 39 1 5.8116 0.0338 -3.5370 40 1 3.7612 0.6586 -4.3705 41 1 4.2841 2.3702 -4.3737 42 1 2.2934 1.3974 -2.7039 43 1 3.3282 2.7938 -2.2770 44 1 2.1905 1.9757 2.0498 45 1 -1.4330 4.5108 1.7964 46 1 -1.3327 4.4382 4.6409 47 1 -0.3895 5.8227 4.0392 48 1 -6.1425 3.5021 4.5794 49 1 -1.3805 7.6909 2.7653 50 1 -3.1766 7.6650 2.3480 51 1 -3.7438 7.3725 4.8036 52 1 -1.9480 7.3981 5.2222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324126105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:51 Heat of formation + Delta-G solvation = -46.319420 kcal Electronic energy + Delta-G solvation = -29928.937560 eV Core-core repulsion = 25928.996881 eV Total energy + Delta-G solvation = -3999.940679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55055 -39.42238 -38.35484 -37.07677 -36.23242 -33.68235 -32.51800 -32.14692 -31.96593 -29.26774 -28.09108 -27.16202 -25.53810 -24.04993 -23.21424 -21.84979 -21.71869 -21.30291 -20.30856 -19.99554 -19.41382 -17.98012 -16.93855 -16.43739 -16.36351 -16.00476 -15.86932 -15.28448 -15.03502 -14.81450 -14.64809 -14.33754 -14.22344 -13.90128 -13.62000 -13.33359 -13.11188 -12.79445 -12.75715 -12.61677 -12.49093 -12.37493 -12.12491 -11.82422 -11.60634 -11.50375 -11.41035 -11.24726 -11.18683 -11.05548 -10.87239 -10.84997 -10.78323 -10.52353 -10.24897 -9.68457 -9.33023 -9.23495 -9.19908 -8.86992 -8.72464 -8.60792 -8.44999 -6.16830 -4.22417 1.74021 2.56567 3.25889 3.37039 3.40474 3.52095 3.62689 4.04136 4.22884 4.29210 4.37466 4.56606 4.60577 4.74194 4.78164 4.91750 4.96907 5.01882 5.12050 5.15617 5.22714 5.28778 5.33169 5.40703 5.46841 5.49885 5.60684 5.64715 5.70070 5.72222 5.79478 5.86557 5.94613 6.00660 6.01437 6.07796 6.10345 6.32027 6.35929 6.38714 6.40670 6.44957 6.61684 6.64858 6.81027 6.92606 7.03435 7.20152 7.63959 7.79062 8.08446 8.38468 8.44358 8.84265 9.45221 10.94341 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002365 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.007644 B =11835.831440 C =12154.887566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.140 3.860 4 H 0.100 0.900 5 C 0.036 3.964 6 N -0.503 5.503 7 C 0.032 3.968 8 C -0.124 4.124 9 C -0.125 4.125 10 C 0.025 3.975 11 N -0.702 5.702 12 C 0.512 3.488 13 O -0.513 6.513 14 C 0.497 3.503 15 O -0.541 6.541 16 N -0.663 5.663 17 C 0.153 3.847 18 C -0.018 4.018 19 C -0.493 4.493 20 H 0.080 0.920 21 C 0.080 3.920 22 N -0.892 5.892 23 Si 0.881 3.119 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.257 1.257 27 C -0.178 4.178 28 C -0.191 4.191 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.410 0.590 45 H 0.418 0.582 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.266 0.734 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.485 -5.047 -11.114 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.035 3.965 4 H 0.118 0.882 5 C -0.093 4.093 6 N -0.228 5.228 7 C -0.096 4.096 8 C -0.162 4.162 9 C -0.163 4.163 10 C -0.103 4.103 11 N -0.357 5.357 12 C 0.293 3.707 13 O -0.387 6.387 14 C 0.277 3.723 15 O -0.420 6.420 16 N -0.314 5.314 17 C 0.030 3.970 18 C -0.019 4.019 19 C -0.530 4.530 20 H 0.098 0.902 21 C -0.124 4.124 22 N -0.528 5.528 23 Si 0.709 3.291 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.181 1.181 27 C -0.216 4.216 28 C -0.229 4.229 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.246 0.754 45 H 0.255 0.745 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.108 0.892 51 H 0.109 0.891 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.073 -5.727 -11.055 24.476 hybrid contribution 0.224 0.990 1.260 1.618 sum 21.297 -4.737 -9.796 23.916 Atomic orbital electron populations 1.21748 0.95169 1.01238 1.02559 1.21866 0.96455 0.95094 1.02992 1.21158 0.93392 0.94502 0.87424 0.88229 1.22545 0.95158 0.99157 0.92480 1.65393 1.05664 1.50277 1.01428 1.23138 0.89313 1.00679 0.96507 1.22288 0.97348 1.02056 0.94537 1.22289 0.95100 1.01660 0.97230 1.23213 0.99565 0.96194 0.91298 1.45702 1.27226 1.48846 1.13883 1.20348 0.81440 0.79567 0.89328 1.90766 1.51351 1.60909 1.35691 1.19964 0.82532 0.81263 0.88573 1.90710 1.54450 1.62752 1.34078 1.45698 1.28276 1.40223 1.17161 1.21284 0.95828 0.94167 0.85764 1.19608 0.94749 0.86872 1.00675 1.20186 1.05790 1.31891 0.95124 0.90172 1.24995 0.94359 0.93902 0.99109 1.69887 1.15314 1.33812 1.33822 0.86839 0.79889 0.77356 0.85058 1.20478 1.22110 1.18132 1.22906 1.00543 1.02495 0.95617 1.22938 1.01414 1.05346 0.93192 0.92952 0.92320 0.92950 0.89755 0.91913 0.89777 0.93812 0.93741 0.89956 0.91401 0.90950 0.90869 0.91331 0.89551 0.93559 0.75402 0.74521 0.91087 0.93257 0.92439 0.90832 0.89229 0.89076 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.01 37.16 0.33 -1.55 16 2 C -0.13 -1.30 5.56 -26.73 -0.15 -1.45 16 3 C 0.14 1.47 2.12 -67.93 -0.14 1.33 16 4 H 0.10 1.20 5.60 -51.93 -0.29 0.91 16 5 C 0.04 0.30 4.63 -3.82 -0.02 0.29 16 6 N -0.50 -4.11 4.92 -229.97 -1.13 -5.25 16 7 C 0.03 0.21 6.49 -2.18 -0.01 0.20 16 8 C -0.12 -0.74 7.00 -25.35 -0.18 -0.92 16 9 C -0.12 -0.82 7.00 -25.36 -0.18 -1.00 16 10 C 0.03 0.20 5.20 -2.18 -0.01 0.19 16 11 N -0.70 -8.63 4.74 -54.23 -0.26 -8.89 16 12 C 0.51 8.14 6.58 -11.59 -0.08 8.07 16 13 O -0.51 -9.09 15.15 5.49 0.08 -9.01 16 14 C 0.50 9.08 7.88 -11.59 -0.09 8.99 16 15 O -0.54 -10.62 16.46 5.50 0.09 -10.53 16 16 N -0.66 -12.89 5.37 -60.73 -0.33 -13.22 16 17 C 0.15 3.14 5.35 -4.04 -0.02 3.12 16 18 C -0.02 -0.39 0.91 -155.66 -0.14 -0.53 16 19 C -0.49 -13.02 8.98 -34.44 -0.31 -13.33 16 20 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 23 Si 0.88 21.28 24.76 -169.99 -4.21 17.07 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.26 -5.89 5.76 56.52 0.33 -5.56 16 27 C -0.18 -3.40 9.94 -26.69 -0.27 -3.66 16 28 C -0.19 -3.85 7.34 -26.69 -0.20 -4.05 16 29 H 0.05 0.78 6.62 -51.93 -0.34 0.44 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.38 7.93 -51.93 -0.41 -0.03 16 36 H 0.04 0.30 7.85 -51.93 -0.41 -0.11 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.75 7.51 -51.93 -0.39 0.36 16 43 H 0.05 0.40 7.99 -51.93 -0.42 -0.01 16 44 H 0.41 4.55 8.21 -40.82 -0.34 4.22 16 45 H 0.42 8.20 7.72 -40.82 -0.31 7.88 16 46 H 0.07 1.60 6.99 -51.93 -0.36 1.24 16 47 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 51 H 0.09 1.93 6.86 -51.92 -0.36 1.58 16 52 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -30.21 407.95 -9.54 -39.75 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -9.16 Total: 11.85 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.55 Total: -2.18 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.94 Total: -53.11 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.21 Total: 17.07 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.21 -9.54 -39.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324126105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.573 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds