Wall clock time and date at job start Tue Mar 31 2020 20:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08999 * 109.47423 * 305.00368 * 3 2 1 5 5 C 1.53007 * 109.47011 * 185.00054 * 3 2 1 6 6 N 1.46896 * 109.46979 * 66.72304 * 5 3 2 7 7 C 1.48556 * 110.99847 * 172.13755 * 6 5 3 8 8 C 1.54383 * 104.59435 * 200.96184 * 7 6 5 9 9 C 1.54254 * 105.05988 * 23.85042 * 8 7 6 10 10 C 1.48564 * 111.00127 * 56.71832 * 6 5 3 11 11 N 1.46502 * 109.47025 * 65.00430 * 3 2 1 12 12 C 1.34771 * 119.99810 * 262.96007 * 11 3 2 13 13 O 1.21358 * 120.00294 * 359.97438 * 12 11 3 14 14 C 1.49452 * 120.00267 * 180.02562 * 12 11 3 15 15 O 1.21350 * 119.99855 * 354.88793 * 14 12 11 16 16 N 1.34770 * 120.00281 * 174.89383 * 14 12 11 17 17 C 1.46504 * 119.99991 * 185.38786 * 16 14 12 18 18 C 1.52999 * 109.46933 * 185.10079 * 17 16 14 19 19 C 1.50700 * 115.55134 * 57.64987 * 18 17 16 20 20 H 1.08005 * 119.99478 * 269.54751 * 19 18 17 21 21 C 1.37871 * 120.00544 * 89.54178 * 19 18 17 22 22 N 1.31513 * 120.00238 * 180.77038 * 21 19 18 23 23 Si 1.86796 * 119.99873 * 0.77714 * 21 19 18 24 24 H 1.48498 * 109.47227 * 92.54426 * 23 21 19 25 25 H 1.48497 * 109.47228 * 212.54627 * 23 21 19 26 26 H 1.48502 * 109.47332 * 332.54241 * 23 21 19 27 27 C 1.53001 * 117.50086 * 271.96867 * 18 17 16 28 28 C 1.53000 * 117.49580 * 203.30922 * 18 17 16 29 29 H 1.08996 * 109.47005 * 299.99171 * 1 2 3 30 30 H 1.08996 * 109.47222 * 59.99944 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47212 * 240.00373 * 2 1 3 33 33 H 1.09001 * 109.47539 * 120.00714 * 2 1 3 34 34 H 1.08999 * 109.46798 * 306.71807 * 5 3 2 35 35 H 1.09004 * 109.46945 * 186.72364 * 5 3 2 36 36 H 1.08997 * 110.41250 * 319.73640 * 7 6 5 37 37 H 1.08997 * 110.41290 * 82.18341 * 7 6 5 38 38 H 1.09003 * 110.32645 * 142.74789 * 8 7 6 39 39 H 1.09006 * 110.31948 * 264.95234 * 8 7 6 40 40 H 1.09002 * 110.32603 * 241.10479 * 9 8 7 41 41 H 1.08997 * 110.32450 * 118.90171 * 9 8 7 42 42 H 1.08997 * 110.41009 * 277.81654 * 10 6 5 43 43 H 1.09003 * 110.41178 * 40.14043 * 10 6 5 44 44 H 0.97001 * 120.00542 * 82.95231 * 11 3 2 45 45 H 0.97003 * 120.00386 * 5.38928 * 16 14 12 46 46 H 1.08995 * 109.47256 * 305.10463 * 17 16 14 47 47 H 1.09004 * 109.46426 * 65.10537 * 17 16 14 48 48 H 0.96997 * 120.00216 * 179.97438 * 22 21 19 49 49 H 1.08996 * 117.49800 * 0.02562 * 27 18 17 50 50 H 1.09002 * 117.49635 * 145.02524 * 27 18 17 51 51 H 1.09007 * 117.49904 * 214.98230 * 28 18 17 52 52 H 1.09000 * 117.50126 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 3.9476 0.9348 -1.4493 7 6 5.4061 1.0967 -1.6807 8 6 5.5645 1.0456 -3.2155 9 6 4.1892 1.4646 -3.7745 10 6 3.3155 1.7338 -2.5306 11 7 1.6525 2.0974 1.2519 12 6 0.5484 2.8691 1.2950 13 8 -0.1246 3.0217 0.2967 14 6 0.1533 3.5377 2.5719 15 8 0.7720 3.3127 3.5912 16 7 -0.8902 4.3904 2.5913 17 6 -1.2047 5.1354 3.8129 18 6 -2.4977 5.9274 3.6085 19 6 -3.7073 5.1112 3.2320 20 1 -3.9357 4.9327 2.1916 21 6 -4.5223 4.5924 4.2156 22 7 -5.5694 3.8674 3.8874 23 14 -4.1395 4.9194 6.0144 24 1 -4.8747 6.1282 6.4652 25 1 -4.5595 3.7517 6.8301 26 1 -2.6798 5.1380 6.1781 27 6 -2.3794 7.3315 3.0123 28 6 -2.7216 7.1550 4.4938 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9939 0.8066 0.6472 35 1 3.9381 2.4615 -0.0061 36 1 5.7478 2.0572 -1.2951 37 1 5.9579 0.2807 -1.2142 38 1 6.3344 1.7455 -3.5402 39 1 5.8116 0.0338 -3.5370 40 1 3.7612 0.6586 -4.3705 41 1 4.2841 2.3702 -4.3737 42 1 2.2934 1.3974 -2.7039 43 1 3.3282 2.7938 -2.2770 44 1 2.1905 1.9757 2.0498 45 1 -1.4330 4.5108 1.7964 46 1 -1.3327 4.4382 4.6409 47 1 -0.3895 5.8227 4.0392 48 1 -6.1425 3.5021 4.5794 49 1 -1.3805 7.6909 2.7653 50 1 -3.1766 7.6650 2.3480 51 1 -3.7438 7.3725 4.8036 52 1 -1.9480 7.3981 5.2222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324126105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:50 Heat of formation + Delta-G solvation = -68.500358 kcal Electronic energy + Delta-G solvation = -29929.899397 eV Core-core repulsion = 25928.996881 eV Total energy + Delta-G solvation = -4000.902516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81860 -40.33966 -39.56347 -38.70256 -37.25497 -35.18003 -34.23456 -33.50203 -32.77708 -29.84495 -29.20082 -28.51294 -27.46460 -25.11565 -24.31242 -23.37733 -22.56724 -21.88949 -21.39998 -21.19553 -20.97800 -19.43865 -18.27513 -18.03992 -17.20637 -17.10726 -16.93558 -16.85452 -16.30597 -16.14364 -15.80396 -15.44439 -15.12131 -15.10506 -14.78276 -14.69393 -14.52563 -14.34787 -14.17145 -13.76951 -13.47956 -13.29952 -13.11144 -13.04791 -12.79469 -12.68822 -12.52740 -12.34588 -12.18560 -12.09703 -12.03003 -11.99932 -11.93789 -11.68328 -11.57390 -11.34158 -11.02994 -10.79766 -10.64649 -10.37779 -10.29679 -10.04203 -9.50683 -8.30520 -6.38718 0.36519 1.30795 1.34869 1.39519 1.50158 2.15088 2.35743 2.57482 3.03616 3.08961 3.25104 3.49084 3.54571 3.73922 3.86873 3.97562 3.99349 4.12836 4.16490 4.32628 4.36058 4.37975 4.40839 4.48436 4.48727 4.55110 4.66743 4.72608 4.73519 4.83278 4.86263 4.89423 4.93030 4.99288 4.99774 5.07988 5.09505 5.12123 5.21992 5.23033 5.29550 5.30344 5.35588 5.39921 5.48537 5.67410 5.84755 5.96522 5.98141 6.26518 6.41922 6.70798 6.76439 6.97362 7.32048 8.84403 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002365 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.007644 B =11835.831440 C =12154.887566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.141 3.859 4 H 0.084 0.916 5 C 0.044 3.956 6 N -0.508 5.508 7 C 0.030 3.970 8 C -0.121 4.121 9 C -0.124 4.124 10 C 0.022 3.978 11 N -0.683 5.683 12 C 0.516 3.484 13 O -0.537 6.537 14 C 0.497 3.503 15 O -0.553 6.553 16 N -0.671 5.671 17 C 0.160 3.840 18 C -0.046 4.046 19 C -0.483 4.483 20 H 0.038 0.962 21 C 0.021 3.979 22 N -0.946 5.946 23 Si 0.936 3.064 24 H -0.267 1.267 25 H -0.305 1.305 26 H -0.232 1.232 27 C -0.156 4.156 28 C -0.185 4.185 29 H 0.024 0.976 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.419 0.581 45 H 0.414 0.586 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.264 0.736 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.078 0.922 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.741 -4.462 -10.602 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.102 0.898 5 C -0.085 4.085 6 N -0.233 5.233 7 C -0.098 4.098 8 C -0.159 4.159 9 C -0.162 4.162 10 C -0.105 4.105 11 N -0.337 5.337 12 C 0.296 3.704 13 O -0.413 6.413 14 C 0.277 3.723 15 O -0.433 6.433 16 N -0.321 5.321 17 C 0.037 3.963 18 C -0.047 4.047 19 C -0.520 4.520 20 H 0.057 0.943 21 C -0.177 4.177 22 N -0.585 5.585 23 Si 0.761 3.239 24 H -0.192 1.192 25 H -0.233 1.233 26 H -0.155 1.155 27 C -0.193 4.193 28 C -0.223 4.223 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.256 0.744 45 H 0.251 0.749 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.125 0.875 50 H 0.100 0.900 51 H 0.097 0.903 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 24.390 -5.137 -10.546 27.064 hybrid contribution -0.781 0.777 0.972 1.469 sum 23.609 -4.360 -9.574 25.847 Atomic orbital electron populations 1.21727 0.96994 1.01302 1.00540 1.21810 0.94594 0.94996 1.04075 1.21262 0.95055 0.94159 0.85819 0.89768 1.22457 0.93107 0.99615 0.93328 1.65410 1.06711 1.50139 1.01038 1.23214 0.88244 1.01108 0.97212 1.22297 0.97101 1.02665 0.93867 1.22294 0.95242 1.02054 0.96585 1.23208 0.99493 0.95630 0.92220 1.45658 1.25759 1.47273 1.14981 1.19965 0.82257 0.80072 0.88072 1.90765 1.52404 1.62119 1.36037 1.20327 0.81901 0.80742 0.89284 1.90693 1.54765 1.63048 1.34767 1.45742 1.28736 1.40801 1.16783 1.21127 0.95818 0.93967 0.85430 1.19468 0.93564 0.87699 1.03968 1.20345 1.07124 1.31452 0.93119 0.94350 1.25832 0.94274 0.93976 1.03617 1.70040 1.17149 1.36239 1.35088 0.85940 0.81162 0.77096 0.79674 1.19198 1.23252 1.15525 1.22940 1.02117 0.99258 0.94988 1.23019 1.01829 1.03030 0.94413 0.95672 0.93574 0.91862 0.88553 0.90763 0.88268 0.93865 0.93628 0.89067 0.90335 0.90453 0.90757 0.90730 0.90587 0.94431 0.74389 0.74912 0.93230 0.90530 0.92666 0.87521 0.89965 0.90336 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.01 71.98 0.65 -3.10 16 2 C -0.12 -2.27 5.56 30.59 0.17 -2.10 16 3 C 0.14 2.83 2.12 44.99 0.10 2.92 16 4 H 0.08 2.03 5.60 -2.39 -0.01 2.01 16 5 C 0.04 0.66 4.63 86.31 0.40 1.06 16 6 N -0.51 -7.39 4.92 -881.50 -4.34 -11.73 16 7 C 0.03 0.34 6.49 86.45 0.56 0.90 16 8 C -0.12 -1.18 7.00 31.49 0.22 -0.96 16 9 C -0.12 -1.44 7.00 31.49 0.22 -1.22 16 10 C 0.02 0.34 5.20 86.45 0.45 0.79 16 11 N -0.68 -16.17 4.74 -443.85 -2.10 -18.27 16 12 C 0.52 16.37 6.58 87.27 0.57 16.95 16 13 O -0.54 -19.44 15.15 -3.27 -0.05 -19.49 16 14 C 0.50 17.94 7.88 87.27 0.69 18.62 16 15 O -0.55 -21.08 16.46 -3.25 -0.05 -21.13 16 16 N -0.67 -25.91 5.37 -464.41 -2.49 -28.41 16 17 C 0.16 6.32 5.35 86.38 0.46 6.78 16 18 C -0.05 -1.95 0.91 -52.93 -0.05 -2.00 16 19 C -0.48 -26.12 8.98 25.60 0.23 -25.89 16 20 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 21 C 0.02 1.19 5.47 84.65 0.46 1.65 16 22 N -0.95 -58.60 13.96 21.44 0.30 -58.30 16 23 Si 0.94 43.82 24.76 68.60 1.70 45.51 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.23 -9.86 5.76 99.48 0.57 -9.29 16 27 C -0.16 -5.54 9.94 30.62 0.30 -5.23 16 28 C -0.19 -6.90 7.34 30.62 0.22 -6.67 16 29 H 0.02 0.75 6.62 -2.39 -0.02 0.74 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.70 7.68 -2.38 -0.02 1.68 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 0.67 7.93 -2.38 -0.02 0.65 16 36 H 0.05 0.51 7.85 -2.39 -0.02 0.50 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.31 7.51 -2.39 -0.02 1.29 16 43 H 0.04 0.63 7.99 -2.39 -0.02 0.62 16 44 H 0.42 8.61 8.21 -92.71 -0.76 7.85 16 45 H 0.41 16.60 7.72 -92.71 -0.72 15.88 16 46 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 47 H 0.08 2.62 8.11 -2.38 -0.02 2.60 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 51 H 0.08 3.14 6.86 -2.38 -0.02 3.12 16 52 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -67.25 407.95 -2.07 -69.32 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.69 Total: 39.97 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.66 Total: 2.51 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -8.63 Total: -116.70 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.10 Total: -40.62 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.70 Total: 45.51 kcal Total: -67.25 -2.07 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324126105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds