Wall clock time and date at job start Tue Mar 31 2020 19:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.09000 * 115.56199 * 29.31371 * 3 2 1 5 5 C 1.52995 * 117.49696 * 243.62476 * 3 2 1 6 6 C 1.52999 * 117.49646 * 175.00166 * 3 2 1 7 7 H 1.09000 * 117.51893 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49714 * 214.98037 * 6 3 2 9 9 O 1.21276 * 120.00152 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99894 * 179.97438 * 8 6 3 11 11 C 1.46496 * 120.00257 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.52081 * 300.12568 * 11 10 8 13 13 C 1.53120 * 109.52697 * 179.97438 * 11 10 8 14 14 C 1.53035 * 109.28027 * 297.68790 * 13 11 10 15 15 N 1.46857 * 109.52019 * 300.81773 * 14 13 11 16 16 C 1.46895 * 110.99906 * 185.83427 * 15 14 13 17 17 C 1.50700 * 109.47051 * 170.00042 * 16 15 14 18 18 O 1.21292 * 119.99931 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99961 * 180.02562 * 17 16 15 20 20 C 1.37090 * 119.99722 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00228 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99996 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47174 * 89.99684 * 24 22 20 26 26 H 1.48504 * 109.46913 * 209.99934 * 24 22 20 27 27 H 1.48501 * 109.47062 * 329.99733 * 24 22 20 28 28 C 1.46852 * 111.19370 * 61.74437 * 15 14 13 29 29 C 1.53038 * 109.52067 * 298.25321 * 28 15 14 30 30 H 1.08996 * 109.47083 * 59.99355 * 1 2 3 31 31 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46627 * 300.00316 * 1 2 3 33 33 H 1.08998 * 109.46556 * 239.99726 * 2 1 3 34 34 H 1.08998 * 109.46790 * 120.00196 * 2 1 3 35 35 H 1.08997 * 117.50252 * 145.02174 * 5 3 2 36 36 H 1.09000 * 117.49998 * 359.97438 * 5 3 2 37 37 H 0.97009 * 120.00203 * 359.97438 * 10 8 6 38 38 H 1.08992 * 109.47088 * 299.86696 * 12 11 10 39 39 H 1.09001 * 109.46863 * 59.87456 * 12 11 10 40 40 H 1.09000 * 109.46866 * 179.86946 * 12 11 10 41 41 H 1.08997 * 109.50575 * 177.74496 * 13 11 10 42 42 H 1.09004 * 109.53600 * 57.64685 * 13 11 10 43 43 H 1.09000 * 109.46734 * 180.80363 * 14 13 11 44 44 H 1.09000 * 109.45323 * 60.82445 * 14 13 11 45 45 H 1.09004 * 109.47210 * 50.00264 * 16 15 14 46 46 H 1.08997 * 109.47605 * 290.00624 * 16 15 14 47 47 H 0.96995 * 120.00015 * 359.72695 * 19 17 16 48 48 H 0.97001 * 119.99781 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.46702 * 58.27505 * 28 15 14 50 50 H 1.09000 * 109.45870 * 178.24280 * 28 15 14 51 51 H 1.08998 * 109.50515 * 299.24077 * 29 28 15 52 52 H 1.09002 * 109.53178 * 179.14622 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8439 1.9075 -1.2159 6 6 3.5502 1.6579 0.1182 7 1 4.1807 0.7721 0.1956 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6169 1.3911 10 7 5.3425 3.0999 1.0276 11 6 5.8020 4.2707 1.7787 12 6 5.2612 5.5431 1.1234 13 6 7.3328 4.3075 1.7827 14 6 7.8664 3.0618 2.4936 15 7 7.3561 3.0260 3.8702 16 6 7.9571 1.9189 4.6258 17 6 7.6055 2.0572 6.0847 18 8 6.9211 2.9863 6.4581 19 7 8.0516 1.1483 6.9745 20 6 7.7321 1.2744 8.3017 21 1 7.1227 2.1017 8.6342 22 6 8.1915 0.3372 9.2189 23 7 7.8849 0.4577 10.4911 24 14 9.2449 -1.0942 8.6437 25 1 10.6776 -0.7071 8.6966 26 1 9.0154 -2.2647 9.5284 27 1 8.8791 -1.4488 7.2488 28 6 5.8901 2.9425 3.8910 29 6 5.2976 4.1848 3.2218 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.7213 2.9427 -1.5344 36 1 3.0099 1.1857 -2.0156 37 1 5.9880 2.4958 0.6282 38 1 5.6250 5.6065 0.0979 39 1 4.1715 5.5157 1.1214 40 1 5.6017 6.4135 1.6842 41 1 7.6739 5.2000 2.3073 42 1 7.6997 4.3261 0.7565 43 1 8.9558 3.0920 2.5109 44 1 7.5361 2.1702 1.9606 45 1 9.0406 1.9453 4.5091 46 1 7.5742 0.9710 4.2480 47 1 8.5956 0.4031 6.6752 48 1 8.2059 -0.1963 11.1314 49 1 5.5693 2.0514 3.3516 50 1 5.5442 2.8862 4.9232 51 1 5.6067 5.0753 3.7690 52 1 4.2098 4.1158 3.2236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324333379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:06 Heat of formation + Delta-G solvation = -46.615981 kcal Electronic energy + Delta-G solvation = -30277.898187 eV Core-core repulsion = 26277.944648 eV Total energy + Delta-G solvation = -3999.953539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82259 -39.19246 -38.15789 -36.95738 -35.08508 -33.86015 -32.57538 -31.81725 -31.61247 -30.78738 -29.12679 -26.26040 -25.01972 -24.04795 -23.84613 -23.19515 -21.72052 -20.92949 -20.26639 -19.35304 -19.10605 -18.25408 -17.60293 -16.22840 -15.78474 -15.39567 -15.27285 -15.13288 -14.89579 -14.84676 -14.61586 -14.38511 -13.97219 -13.84852 -13.63841 -13.22353 -12.94619 -12.80025 -12.75357 -12.59532 -12.43476 -12.29861 -12.14094 -12.08686 -11.87756 -11.63800 -11.59215 -11.36023 -11.33058 -11.09732 -11.03177 -10.64349 -10.59230 -10.44279 -10.42303 -10.29134 -9.96146 -9.56119 -9.51790 -9.12149 -8.50145 -8.16024 -7.90460 -6.29460 -3.80606 2.38509 2.97598 3.02461 3.07025 3.15129 3.54626 3.75759 3.95131 4.11271 4.28542 4.44490 4.47548 4.58927 4.77265 4.78758 4.86052 4.90759 4.92943 5.02608 5.12090 5.20394 5.25329 5.30617 5.33225 5.45000 5.50337 5.53503 5.59138 5.61719 5.63586 5.67822 5.72783 5.76873 5.79021 5.83949 5.86355 5.89737 5.96255 6.01213 6.07620 6.12240 6.21921 6.41030 6.56951 6.59947 7.23090 7.38342 7.44654 7.60693 8.16782 8.17204 8.62303 8.97368 9.44386 9.85910 10.83795 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.002728 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.579156 B =10261.126566 C =11682.735658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.115 4.115 4 H 0.119 0.881 5 C -0.150 4.150 6 C -0.193 4.193 7 H 0.120 0.880 8 C 0.545 3.455 9 O -0.533 6.533 10 N -0.717 5.717 11 C 0.174 3.826 12 C -0.160 4.160 13 C -0.116 4.116 14 C 0.055 3.945 15 N -0.513 5.513 16 C 0.044 3.956 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.058 3.942 29 C -0.121 4.121 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.019 0.981 50 H 0.102 0.898 51 H 0.079 0.921 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -0.104 -27.443 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.134 4.134 4 H 0.137 0.863 5 C -0.187 4.187 6 C -0.214 4.214 7 H 0.138 0.862 8 C 0.332 3.668 9 O -0.410 6.410 10 N -0.368 5.368 11 C 0.089 3.911 12 C -0.218 4.218 13 C -0.154 4.154 14 C -0.074 4.074 15 N -0.238 5.238 16 C -0.088 4.088 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.070 4.070 29 C -0.160 4.160 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.120 0.880 51 H 0.098 0.902 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.751 1.452 -26.354 27.013 hybrid contribution 1.250 -2.425 -0.824 2.849 sum -4.501 -0.972 -27.177 27.565 Atomic orbital electron populations 1.21740 0.95109 1.01691 1.02169 1.21164 0.96380 0.93628 1.02158 1.22470 0.91376 0.98767 1.00774 0.86339 1.23082 1.02331 1.02997 0.90290 1.22340 0.97928 0.99114 1.02042 0.86230 1.19556 0.82294 0.85356 0.79605 1.90643 1.54034 1.48277 1.48065 1.46105 1.06794 1.28423 1.55496 1.20455 0.93701 0.84986 0.91955 1.22181 1.03449 0.96396 0.99817 1.21879 0.93207 1.00000 1.00299 1.22094 0.99887 0.96349 0.89032 1.61536 1.07054 1.43907 1.11313 1.21861 1.00239 0.92548 0.94110 1.19657 0.85150 0.84823 0.86527 1.90535 1.40592 1.33076 1.79607 1.42217 1.48315 1.24427 1.08254 1.19427 1.31306 1.12298 0.80149 0.86273 1.25036 0.97976 0.98047 0.95148 1.69624 1.45024 1.36378 1.01210 0.86675 0.81240 0.82789 0.78680 1.19625 1.20224 1.19600 1.22198 0.86216 0.95670 1.02888 1.21968 1.01686 0.99490 0.92832 0.92596 0.92600 0.92365 0.91766 0.91297 0.88389 0.87985 0.76954 0.93070 0.90455 0.91651 0.89169 0.91173 0.90563 0.95576 0.89298 0.93646 0.79792 0.91651 0.96289 0.87959 0.90199 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.87 37.16 0.37 -0.65 16 2 C -0.10 -0.70 6.22 -26.73 -0.17 -0.86 16 3 C -0.12 -1.00 5.25 -90.62 -0.48 -1.48 16 4 H 0.12 1.26 7.60 -51.93 -0.39 0.86 16 5 C -0.15 -1.09 9.88 -26.73 -0.26 -1.35 16 6 C -0.19 -1.70 5.91 -91.77 -0.54 -2.24 16 7 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 8 C 0.55 6.32 7.03 -10.99 -0.08 6.25 16 9 O -0.53 -8.00 12.47 5.56 0.07 -7.93 16 10 N -0.72 -7.22 4.17 -47.50 -0.20 -7.42 16 11 C 0.17 1.98 0.66 -131.70 -0.09 1.89 16 12 C -0.16 -1.75 8.41 37.16 0.31 -1.43 16 13 C -0.12 -1.15 4.93 -26.65 -0.13 -1.28 16 14 C 0.05 0.62 5.30 -3.83 -0.02 0.60 16 15 N -0.51 -8.12 4.40 -236.11 -1.04 -9.15 16 16 C 0.04 0.74 5.45 -4.98 -0.03 0.71 16 17 C 0.45 10.34 7.46 -10.98 -0.08 10.25 16 18 O -0.56 -14.93 13.90 5.55 0.08 -14.85 16 19 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 24 Si 0.88 19.44 27.74 -169.99 -4.72 14.72 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.44 6.51 56.52 0.37 -5.07 16 28 C 0.06 0.96 4.96 -3.83 -0.02 0.94 16 29 C -0.12 -1.80 4.71 -26.65 -0.13 -1.93 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.39 7.88 -51.93 -0.41 -0.02 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.55 8.03 -51.93 -0.42 0.14 16 37 H 0.40 3.10 7.48 -40.82 -0.31 2.80 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 44 H 0.03 0.26 7.02 -51.93 -0.36 -0.10 16 45 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 46 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 47 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.02 0.30 7.69 -51.93 -0.40 -0.10 16 50 H 0.10 2.14 5.78 -51.93 -0.30 1.84 16 51 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 52 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16 LS Contribution 403.06 15.07 6.07 6.07 Total: -1.00 -33.73 403.06 -9.52 -43.25 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -8.92 Total: 13.07 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.59 Total: 1.66 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.52 Total: -55.99 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.15 Total: -22.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.72 Total: 14.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.73 -9.52 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324333379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.368 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds