Wall clock time and date at job start Tue Mar 31 2020 19:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.09000 * 115.56199 * 29.31371 * 3 2 1 5 5 C 1.52995 * 117.49696 * 243.62476 * 3 2 1 6 6 C 1.52999 * 117.49646 * 175.00166 * 3 2 1 7 7 H 1.09000 * 117.51893 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49714 * 214.98037 * 6 3 2 9 9 O 1.21276 * 120.00152 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99894 * 179.97438 * 8 6 3 11 11 C 1.46496 * 120.00257 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.52081 * 300.12568 * 11 10 8 13 13 C 1.53120 * 109.52697 * 179.97438 * 11 10 8 14 14 C 1.53035 * 109.28027 * 297.68790 * 13 11 10 15 15 N 1.46857 * 109.52019 * 300.81773 * 14 13 11 16 16 C 1.46895 * 110.99906 * 185.83427 * 15 14 13 17 17 C 1.50700 * 109.47051 * 170.00042 * 16 15 14 18 18 O 1.21292 * 119.99931 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99961 * 180.02562 * 17 16 15 20 20 C 1.37090 * 119.99722 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00228 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99996 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00236 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47174 * 89.99684 * 24 22 20 26 26 H 1.48504 * 109.46913 * 209.99934 * 24 22 20 27 27 H 1.48501 * 109.47062 * 329.99733 * 24 22 20 28 28 C 1.46852 * 111.19370 * 61.74437 * 15 14 13 29 29 C 1.53038 * 109.52067 * 298.25321 * 28 15 14 30 30 H 1.08996 * 109.47083 * 59.99355 * 1 2 3 31 31 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46627 * 300.00316 * 1 2 3 33 33 H 1.08998 * 109.46556 * 239.99726 * 2 1 3 34 34 H 1.08998 * 109.46790 * 120.00196 * 2 1 3 35 35 H 1.08997 * 117.50252 * 145.02174 * 5 3 2 36 36 H 1.09000 * 117.49998 * 359.97438 * 5 3 2 37 37 H 0.97009 * 120.00203 * 359.97438 * 10 8 6 38 38 H 1.08992 * 109.47088 * 299.86696 * 12 11 10 39 39 H 1.09001 * 109.46863 * 59.87456 * 12 11 10 40 40 H 1.09000 * 109.46866 * 179.86946 * 12 11 10 41 41 H 1.08997 * 109.50575 * 177.74496 * 13 11 10 42 42 H 1.09004 * 109.53600 * 57.64685 * 13 11 10 43 43 H 1.09000 * 109.46734 * 180.80363 * 14 13 11 44 44 H 1.09000 * 109.45323 * 60.82445 * 14 13 11 45 45 H 1.09004 * 109.47210 * 50.00264 * 16 15 14 46 46 H 1.08997 * 109.47605 * 290.00624 * 16 15 14 47 47 H 0.96995 * 120.00015 * 359.72695 * 19 17 16 48 48 H 0.97001 * 119.99781 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.46702 * 58.27505 * 28 15 14 50 50 H 1.09000 * 109.45870 * 178.24280 * 28 15 14 51 51 H 1.08998 * 109.50515 * 299.24077 * 29 28 15 52 52 H 1.09002 * 109.53178 * 179.14622 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8439 1.9075 -1.2159 6 6 3.5502 1.6579 0.1182 7 1 4.1807 0.7721 0.1956 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6169 1.3911 10 7 5.3425 3.0999 1.0276 11 6 5.8020 4.2707 1.7787 12 6 5.2612 5.5431 1.1234 13 6 7.3328 4.3075 1.7827 14 6 7.8664 3.0618 2.4936 15 7 7.3561 3.0260 3.8702 16 6 7.9571 1.9189 4.6258 17 6 7.6055 2.0572 6.0847 18 8 6.9211 2.9863 6.4581 19 7 8.0516 1.1483 6.9745 20 6 7.7321 1.2744 8.3017 21 1 7.1227 2.1017 8.6342 22 6 8.1915 0.3372 9.2189 23 7 7.8849 0.4577 10.4911 24 14 9.2449 -1.0942 8.6437 25 1 10.6776 -0.7071 8.6966 26 1 9.0154 -2.2647 9.5284 27 1 8.8791 -1.4488 7.2488 28 6 5.8901 2.9425 3.8910 29 6 5.2976 4.1848 3.2218 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.7213 2.9427 -1.5344 36 1 3.0099 1.1857 -2.0156 37 1 5.9880 2.4958 0.6282 38 1 5.6250 5.6065 0.0979 39 1 4.1715 5.5157 1.1214 40 1 5.6017 6.4135 1.6842 41 1 7.6739 5.2000 2.3073 42 1 7.6997 4.3261 0.7565 43 1 8.9558 3.0920 2.5109 44 1 7.5361 2.1702 1.9606 45 1 9.0406 1.9453 4.5091 46 1 7.5742 0.9710 4.2480 47 1 8.5956 0.4031 6.6752 48 1 8.2059 -0.1963 11.1314 49 1 5.5693 2.0514 3.3516 50 1 5.5442 2.8862 4.9232 51 1 5.6067 5.0753 3.7690 52 1 4.2098 4.1158 3.2236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324333379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:05 Heat of formation + Delta-G solvation = -71.571278 kcal Electronic energy + Delta-G solvation = -30278.980330 eV Core-core repulsion = 26277.944648 eV Total energy + Delta-G solvation = -4001.035682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78091 -40.53022 -39.48344 -37.87371 -36.34841 -35.75260 -33.77010 -33.33334 -32.55214 -31.85906 -30.34760 -27.77503 -25.91102 -25.46739 -24.59626 -24.28359 -22.78293 -21.64724 -21.27734 -21.02084 -20.23875 -20.07818 -18.41003 -17.75845 -17.00730 -16.85785 -16.45613 -16.21363 -16.12746 -15.72178 -15.57191 -15.35014 -15.23121 -15.13131 -14.93478 -14.61930 -14.43128 -14.03945 -13.84185 -13.54782 -13.45526 -13.31881 -13.24162 -12.98980 -12.98703 -12.89142 -12.59778 -12.42948 -12.37292 -12.20407 -12.12741 -11.98495 -11.93829 -11.67606 -11.51674 -11.38989 -11.18843 -10.93235 -10.49212 -10.38953 -10.23867 -9.99266 -9.15094 -8.41292 -6.02160 1.29094 1.35587 1.44208 1.54466 1.96891 2.16292 2.23036 2.64601 2.87370 3.13727 3.22529 3.58072 3.71093 3.79981 3.80400 3.88749 3.94215 4.11547 4.19810 4.26994 4.28861 4.29541 4.40572 4.46685 4.49699 4.52482 4.56209 4.61570 4.77049 4.77749 4.79216 4.84528 4.92302 4.97519 4.98985 4.99715 5.11935 5.13957 5.19334 5.22014 5.27325 5.28375 5.32540 5.47566 5.53340 5.65249 5.91024 6.04331 6.27420 6.60507 6.64959 6.89153 7.34172 7.40406 7.99026 8.76736 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.002728 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.579156 B =10261.126566 C =11682.735658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.130 4.130 4 H 0.088 0.912 5 C -0.127 4.127 6 C -0.196 4.196 7 H 0.143 0.857 8 C 0.537 3.463 9 O -0.577 6.577 10 N -0.704 5.704 11 C 0.180 3.820 12 C -0.155 4.155 13 C -0.109 4.109 14 C 0.052 3.948 15 N -0.535 5.535 16 C 0.056 3.944 17 C 0.448 3.552 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.231 1.231 28 C 0.070 3.930 29 C -0.115 4.115 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.127 0.873 46 H 0.074 0.926 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.027 0.973 50 H 0.047 0.953 51 H 0.059 0.941 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 -2.926 -32.210 32.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.149 4.149 4 H 0.107 0.893 5 C -0.164 4.164 6 C -0.217 4.217 7 H 0.161 0.839 8 C 0.325 3.675 9 O -0.457 6.457 10 N -0.356 5.356 11 C 0.094 3.906 12 C -0.213 4.213 13 C -0.147 4.147 14 C -0.074 4.074 15 N -0.260 5.260 16 C -0.075 4.075 17 C 0.236 3.764 18 O -0.491 6.491 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.154 1.154 28 C -0.058 4.058 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.145 0.855 46 H 0.092 0.908 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.611 -1.377 -31.175 31.314 hybrid contribution 0.147 -1.379 0.726 1.566 sum -2.464 -2.757 -30.449 30.672 Atomic orbital electron populations 1.21748 0.95188 1.02160 1.01708 1.21147 0.96328 0.92568 1.02753 1.22437 0.91147 0.99137 1.02185 0.89334 1.23159 0.99923 1.03315 0.90025 1.22382 0.98022 0.98516 1.02773 0.83914 1.20141 0.82395 0.85733 0.79227 1.90642 1.55227 1.49967 1.49839 1.45966 1.06730 1.28181 1.54765 1.20312 0.95070 0.85802 0.89376 1.22106 1.01774 0.96283 1.01114 1.21883 0.91221 0.99250 1.02340 1.22288 1.01181 0.97784 0.86188 1.61457 1.05985 1.44021 1.14563 1.21815 1.02498 0.94170 0.89033 1.21020 0.83024 0.83167 0.89165 1.90531 1.42292 1.35054 1.81203 1.42034 1.49155 1.25696 1.06606 1.18978 1.32105 1.11533 0.83028 0.93023 1.26157 0.99171 1.01561 0.94695 1.69817 1.46650 1.38138 1.03174 0.85333 0.78870 0.77003 0.80082 1.17938 1.20098 1.15404 1.21887 0.87568 0.96665 0.99717 1.21837 1.00070 0.97893 0.95628 0.92074 0.91604 0.93892 0.89653 0.92065 0.89139 0.85057 0.75020 0.90761 0.93049 0.91525 0.90018 0.87225 0.88203 0.93158 0.85517 0.90801 0.77493 0.91177 0.95444 0.93483 0.92213 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.87 71.99 0.71 -1.25 16 2 C -0.09 -1.18 6.22 30.60 0.19 -0.99 16 3 C -0.13 -2.17 5.25 -10.79 -0.06 -2.23 16 4 H 0.09 2.02 7.60 -2.39 -0.02 2.00 16 5 C -0.13 -1.53 9.88 30.59 0.30 -1.22 16 6 C -0.20 -3.05 5.91 -11.54 -0.07 -3.12 16 7 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 8 C 0.54 12.04 7.03 87.66 0.62 12.65 16 9 O -0.58 -18.14 12.47 -3.02 -0.04 -18.18 16 10 N -0.70 -12.50 4.17 -422.58 -1.76 -14.26 16 11 C 0.18 3.83 0.66 3.68 0.00 3.83 16 12 C -0.15 -3.24 8.41 71.98 0.61 -2.63 16 13 C -0.11 -1.76 4.93 30.65 0.15 -1.61 16 14 C 0.05 0.94 5.30 86.32 0.46 1.40 16 15 N -0.53 -15.91 4.40 -900.91 -3.96 -19.88 16 16 C 0.06 1.71 5.45 85.56 0.47 2.17 16 17 C 0.45 20.69 7.46 87.66 0.65 21.34 16 18 O -0.61 -34.65 13.90 -3.07 -0.04 -34.69 16 19 N -0.59 -28.37 5.09 -306.98 -1.56 -29.94 16 20 C -0.33 -19.54 10.16 84.04 0.85 -18.68 16 21 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 22 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 23 N -0.94 -57.44 13.96 21.66 0.30 -57.14 16 24 Si 0.97 38.98 27.74 68.60 1.90 40.89 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.23 -7.76 6.51 99.48 0.65 -7.11 16 28 C 0.07 2.37 4.96 86.33 0.43 2.80 16 29 C -0.12 -3.60 4.71 30.65 0.14 -3.46 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.76 7.88 -2.39 -0.02 0.74 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.13 0.85 8.03 -2.39 -0.02 0.83 16 37 H 0.41 4.63 7.48 -92.70 -0.69 3.94 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.37 6.16 -2.39 -0.01 1.35 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.10 1.42 8.02 -2.39 -0.02 1.40 16 44 H 0.05 0.70 7.02 -2.39 -0.02 0.69 16 45 H 0.13 3.00 7.99 -2.38 -0.02 2.98 16 46 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 47 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 48 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 49 H 0.03 0.86 7.69 -2.39 -0.02 0.84 16 50 H 0.05 2.12 5.78 -2.39 -0.01 2.11 16 51 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.06 2.14 6.14 -2.39 -0.01 2.12 16 Total: -1.00 -84.74 403.06 0.40 -84.33 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.36 Total: 40.39 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.92 Total: 8.48 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.98 Total: -121.22 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.08 Total: -52.87 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.89 kcal Total: -84.74 0.40 -84.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324333379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.762 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds