Wall clock time and date at job start Tue Mar 31 2020 19:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 H 1.09006 * 115.55177 * 29.33263 * 3 2 1 5 5 C 1.52996 * 117.51926 * 243.63121 * 3 2 1 6 6 C 1.53006 * 117.49931 * 174.99892 * 3 2 1 7 7 H 1.09003 * 117.49514 * 0.02562 * 6 3 2 8 8 C 1.50697 * 117.49964 * 215.00242 * 6 3 2 9 9 O 1.21280 * 120.00361 * 0.02562 * 8 6 3 10 10 N 1.34778 * 119.99861 * 179.97438 * 8 6 3 11 11 C 1.46496 * 119.99961 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.57636 * 325.00790 * 11 10 8 13 13 C 1.50467 * 109.56969 * 85.25226 * 11 10 8 14 14 C 1.54137 * 113.12731 * 211.85437 * 13 11 10 15 15 C 1.54077 * 112.33466 * 318.49068 * 14 13 11 16 16 N 1.44272 * 111.97423 * 318.81875 * 15 14 13 17 17 C 1.46901 * 110.99656 * 219.30999 * 16 15 14 18 18 C 1.50699 * 109.47168 * 301.97548 * 17 16 15 19 19 O 1.21292 * 120.00060 * 4.75545 * 18 17 16 20 20 N 1.34774 * 119.99736 * 184.75295 * 18 17 16 21 21 C 1.37100 * 120.00130 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99668 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00469 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99556 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47262 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47075 * 119.99940 * 25 23 21 28 28 H 1.48497 * 109.46957 * 240.00072 * 25 23 21 29 29 C 1.47792 * 109.45747 * 96.44328 * 16 15 14 30 30 C 1.45865 * 112.92608 * 276.72331 * 29 16 15 31 31 H 1.09000 * 109.47148 * 299.99851 * 1 2 3 32 32 H 1.08995 * 109.47637 * 59.99879 * 1 2 3 33 33 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47148 * 240.00149 * 2 1 3 35 35 H 1.09001 * 109.47217 * 120.00043 * 2 1 3 36 36 H 1.09008 * 117.50070 * 145.03200 * 5 3 2 37 37 H 1.08998 * 117.49866 * 0.02562 * 5 3 2 38 38 H 0.96995 * 120.00136 * 0.02562 * 10 8 6 39 39 H 1.08994 * 108.77220 * 332.88676 * 13 11 10 40 40 H 1.09010 * 108.76669 * 91.04525 * 13 11 10 41 41 H 1.08998 * 108.97432 * 197.70417 * 14 13 11 42 42 H 1.08995 * 108.74463 * 79.12484 * 14 13 11 43 43 H 1.08999 * 108.97900 * 198.17336 * 15 14 13 44 44 H 1.09000 * 108.91068 * 79.41275 * 15 14 13 45 45 H 1.09004 * 109.46787 * 61.97258 * 17 16 15 46 46 H 1.09003 * 109.47138 * 181.97323 * 17 16 15 47 47 H 0.96997 * 120.00384 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99699 * 180.02562 * 24 23 21 49 49 H 1.09003 * 108.79351 * 155.83491 * 29 16 15 50 50 H 1.09001 * 108.79667 * 37.61423 * 29 16 15 51 51 H 1.08991 * 109.05845 * 300.78298 * 30 29 16 52 52 H 1.08998 * 109.05744 * 181.85989 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1716 0.4818 5 6 2.8437 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2157 3.6160 1.3927 10 7 5.3423 3.0997 1.0281 11 6 5.8018 4.2703 1.7796 12 1 5.1109 5.0987 1.6236 13 6 5.8645 3.9355 3.2452 14 6 5.5641 5.1426 4.1554 15 6 6.2313 6.4366 3.6509 16 7 7.5728 6.2021 3.1747 17 6 8.4691 7.2985 3.5653 18 6 7.9402 8.5990 3.0176 19 8 6.8738 8.6250 2.4404 20 7 8.6522 9.7333 3.1693 21 6 8.1714 10.9164 2.6707 22 1 7.2218 10.9395 2.1567 23 6 8.9056 12.0857 2.8266 24 7 10.0612 12.0574 3.4516 25 14 8.2501 13.6978 2.1478 26 1 6.9381 13.4622 1.4933 27 1 8.0816 14.6701 3.2575 28 1 9.2091 14.2426 1.1535 29 6 7.5516 6.0328 1.7067 30 6 7.2126 4.6748 1.2962 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.7210 2.9435 -1.5337 37 1 3.0090 1.1869 -2.0160 38 1 5.9878 2.4963 0.6279 39 1 5.1415 3.1476 3.4563 40 1 6.8625 3.5637 3.4776 41 1 5.9261 4.9272 5.1607 42 1 4.4852 5.2929 4.1932 43 1 6.2657 7.1589 4.4665 44 1 5.6334 6.8485 2.8378 45 1 8.5203 7.3561 4.6526 46 1 9.4656 7.1137 3.1639 47 1 9.5052 9.7124 3.6306 48 1 10.5737 12.8737 3.5607 49 1 8.5352 6.2843 1.3099 50 1 6.8189 6.7205 1.2844 51 1 7.9439 3.9834 1.7147 52 1 7.2474 4.6125 0.2086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327148527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:26 Heat of formation + Delta-G solvation = -56.581177 kcal Electronic energy + Delta-G solvation = -29663.870040 eV Core-core repulsion = 25663.484378 eV Total energy + Delta-G solvation = -4000.385662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41308 -39.44510 -37.91123 -36.95959 -35.12891 -33.84631 -32.62994 -32.32511 -31.75648 -31.26602 -27.94236 -25.68458 -25.11866 -24.21207 -23.80413 -23.38000 -20.89030 -20.83381 -19.98429 -19.74379 -18.98229 -17.84216 -17.39999 -16.49302 -16.01181 -15.56583 -15.33875 -15.09058 -14.82827 -14.69168 -14.48590 -14.36162 -14.12697 -13.93294 -13.55562 -13.46864 -12.90860 -12.77876 -12.63299 -12.56058 -12.44476 -12.23551 -11.73560 -11.67189 -11.52200 -11.45552 -11.36255 -11.17742 -10.97685 -10.70990 -10.59136 -10.56956 -10.37371 -10.36185 -10.32360 -10.26600 -10.04807 -9.77890 -9.52900 -9.11396 -9.05251 -8.00885 -7.55302 -6.45842 -3.86957 2.40831 3.01733 3.12724 3.24108 3.31285 3.55625 3.84463 4.14338 4.27738 4.31179 4.45275 4.51026 4.69268 4.83298 4.89522 4.98652 5.00250 5.09244 5.15431 5.21082 5.31573 5.33476 5.42666 5.45201 5.51011 5.57584 5.59193 5.64933 5.68823 5.74916 5.76693 5.80798 5.94920 6.00071 6.05687 6.11428 6.13430 6.21681 6.25492 6.32241 6.39742 6.45283 6.56787 6.59815 6.73166 7.37469 7.47257 7.51161 7.53672 8.01168 8.19698 8.55754 9.13142 9.49475 9.99958 10.70960 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.002017 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.089162 B =13875.796865 C =14459.455793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.192 4.192 7 H 0.121 0.879 8 C 0.540 3.460 9 O -0.537 6.537 10 N -0.722 5.722 11 C 0.147 3.853 12 H 0.088 0.912 13 C -0.112 4.112 14 C -0.106 4.106 15 C 0.057 3.943 16 N -0.504 5.504 17 C 0.042 3.958 18 C 0.406 3.594 19 O -0.595 6.595 20 N -0.558 5.558 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.899 5.899 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.047 3.953 30 C -0.112 4.112 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.398 0.602 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 -24.245 -5.384 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.213 4.213 7 H 0.139 0.861 8 C 0.326 3.674 9 O -0.413 6.413 10 N -0.372 5.372 11 C 0.043 3.957 12 H 0.107 0.893 13 C -0.151 4.151 14 C -0.145 4.145 15 C -0.072 4.072 16 N -0.226 5.226 17 C -0.090 4.090 18 C 0.191 3.809 19 O -0.481 6.481 20 N -0.194 5.194 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.540 5.540 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.081 4.081 30 C -0.151 4.151 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.231 0.769 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.786 -23.952 -5.135 26.024 hybrid contribution 0.570 1.410 -0.485 1.596 sum -8.216 -22.543 -5.620 24.642 Atomic orbital electron populations 1.21741 0.95145 1.01615 1.02258 1.21151 0.96337 0.93631 1.02052 1.22486 0.91433 0.98700 1.01113 0.86384 1.23104 1.02066 1.03236 0.90264 1.22327 0.97744 0.99014 1.02188 0.86072 1.19640 0.82432 0.85524 0.79802 1.90719 1.53896 1.48344 1.48390 1.46095 1.06753 1.28725 1.55649 1.20825 0.96068 0.87670 0.91165 0.89345 1.21515 1.01699 0.98125 0.93765 1.21908 0.99547 0.94660 0.98420 1.21883 0.89509 0.95079 1.00700 1.62037 1.09550 1.39679 1.11372 1.22225 0.97061 0.88397 1.01292 1.21081 0.87297 0.86157 0.86371 1.90502 1.23561 1.86214 1.47809 1.42024 1.20650 1.06769 1.49949 1.19762 1.05762 0.84260 1.33290 0.87960 1.25276 0.95596 0.99792 0.97202 1.69618 1.12867 1.29487 1.42013 0.85815 0.78984 0.81138 0.78513 1.19262 1.20698 1.20715 1.20928 1.02338 0.96009 0.88791 1.20835 0.95276 0.98609 1.00338 0.92429 0.92492 0.92644 0.91715 0.91450 0.88233 0.87869 0.76886 0.92956 0.91539 0.92349 0.92365 0.92185 0.91889 0.89210 0.89469 0.77412 0.91859 0.91637 0.91783 0.91145 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.87 37.15 0.37 -0.54 16 2 C -0.09 -0.60 6.22 -26.73 -0.17 -0.77 16 3 C -0.12 -1.01 5.25 -90.62 -0.48 -1.48 16 4 H 0.12 1.26 7.60 -51.93 -0.39 0.86 16 5 C -0.15 -1.15 9.88 -26.73 -0.26 -1.41 16 6 C -0.19 -1.65 5.91 -91.77 -0.54 -2.19 16 7 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.54 6.60 7.42 -10.99 -0.08 6.51 16 9 O -0.54 -8.93 15.92 5.56 0.09 -8.84 16 10 N -0.72 -7.63 4.99 -54.27 -0.27 -7.90 16 11 C 0.15 1.90 2.12 -68.40 -0.14 1.75 16 12 H 0.09 1.46 6.61 -51.93 -0.34 1.12 16 13 C -0.11 -1.46 5.12 -27.40 -0.14 -1.60 16 14 C -0.11 -1.54 6.14 -25.57 -0.16 -1.70 16 15 C 0.06 0.98 3.75 -4.67 -0.02 0.97 16 16 N -0.50 -8.14 4.45 -241.00 -1.07 -9.21 16 17 C 0.04 0.73 5.54 -4.98 -0.03 0.70 16 18 C 0.41 9.22 7.03 -10.99 -0.08 9.15 16 19 O -0.59 -15.25 11.98 5.55 0.07 -15.18 16 20 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 C 0.05 0.74 4.19 -6.71 -0.03 0.71 16 30 C -0.11 -1.35 5.02 -29.31 -0.15 -1.50 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.40 2.96 8.61 -40.82 -0.35 2.60 16 39 H 0.05 0.69 7.80 -51.93 -0.40 0.29 16 40 H 0.07 0.82 7.39 -51.92 -0.38 0.44 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.11 7.32 -51.93 -0.38 0.73 16 44 H 0.06 1.26 5.46 -51.93 -0.28 0.98 16 45 H 0.09 1.44 8.10 -51.93 -0.42 1.02 16 46 H 0.09 1.36 7.95 -51.93 -0.41 0.95 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 50 H 0.06 1.22 5.91 -51.93 -0.31 0.91 16 51 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 52 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -31.94 405.77 -10.51 -42.45 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -8.94 Total: 13.41 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.14 Total: 0.66 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.68 Total: -54.65 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.15 Total: -24.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.94 -10.51 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327148527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.132 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds