Wall clock time and date at job start Tue Mar 31 2020 19:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 H 1.09006 * 115.55177 * 29.33263 * 3 2 1 5 5 C 1.52996 * 117.51926 * 243.63121 * 3 2 1 6 6 C 1.53006 * 117.49931 * 174.99892 * 3 2 1 7 7 H 1.09003 * 117.49514 * 0.02562 * 6 3 2 8 8 C 1.50697 * 117.49964 * 215.00242 * 6 3 2 9 9 O 1.21280 * 120.00361 * 0.02562 * 8 6 3 10 10 N 1.34778 * 119.99861 * 179.97438 * 8 6 3 11 11 C 1.46496 * 119.99961 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.57636 * 325.00790 * 11 10 8 13 13 C 1.50467 * 109.56969 * 85.25226 * 11 10 8 14 14 C 1.54137 * 113.12731 * 211.85437 * 13 11 10 15 15 C 1.54077 * 112.33466 * 318.49068 * 14 13 11 16 16 N 1.44272 * 111.97423 * 318.81875 * 15 14 13 17 17 C 1.46901 * 110.99656 * 219.30999 * 16 15 14 18 18 C 1.50699 * 109.47168 * 301.97548 * 17 16 15 19 19 O 1.21292 * 120.00060 * 4.75545 * 18 17 16 20 20 N 1.34774 * 119.99736 * 184.75295 * 18 17 16 21 21 C 1.37100 * 120.00130 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99668 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00469 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99556 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47262 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47075 * 119.99940 * 25 23 21 28 28 H 1.48497 * 109.46957 * 240.00072 * 25 23 21 29 29 C 1.47792 * 109.45747 * 96.44328 * 16 15 14 30 30 C 1.45865 * 112.92608 * 276.72331 * 29 16 15 31 31 H 1.09000 * 109.47148 * 299.99851 * 1 2 3 32 32 H 1.08995 * 109.47637 * 59.99879 * 1 2 3 33 33 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47148 * 240.00149 * 2 1 3 35 35 H 1.09001 * 109.47217 * 120.00043 * 2 1 3 36 36 H 1.09008 * 117.50070 * 145.03200 * 5 3 2 37 37 H 1.08998 * 117.49866 * 0.02562 * 5 3 2 38 38 H 0.96995 * 120.00136 * 0.02562 * 10 8 6 39 39 H 1.08994 * 108.77220 * 332.88676 * 13 11 10 40 40 H 1.09010 * 108.76669 * 91.04525 * 13 11 10 41 41 H 1.08998 * 108.97432 * 197.70417 * 14 13 11 42 42 H 1.08995 * 108.74463 * 79.12484 * 14 13 11 43 43 H 1.08999 * 108.97900 * 198.17336 * 15 14 13 44 44 H 1.09000 * 108.91068 * 79.41275 * 15 14 13 45 45 H 1.09004 * 109.46787 * 61.97258 * 17 16 15 46 46 H 1.09003 * 109.47138 * 181.97323 * 17 16 15 47 47 H 0.96997 * 120.00384 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99699 * 180.02562 * 24 23 21 49 49 H 1.09003 * 108.79351 * 155.83491 * 29 16 15 50 50 H 1.09001 * 108.79667 * 37.61423 * 29 16 15 51 51 H 1.08991 * 109.05845 * 300.78298 * 30 29 16 52 52 H 1.08998 * 109.05744 * 181.85989 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1716 0.4818 5 6 2.8437 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2157 3.6160 1.3927 10 7 5.3423 3.0997 1.0281 11 6 5.8018 4.2703 1.7796 12 1 5.1109 5.0987 1.6236 13 6 5.8645 3.9355 3.2452 14 6 5.5641 5.1426 4.1554 15 6 6.2313 6.4366 3.6509 16 7 7.5728 6.2021 3.1747 17 6 8.4691 7.2985 3.5653 18 6 7.9402 8.5990 3.0176 19 8 6.8738 8.6250 2.4404 20 7 8.6522 9.7333 3.1693 21 6 8.1714 10.9164 2.6707 22 1 7.2218 10.9395 2.1567 23 6 8.9056 12.0857 2.8266 24 7 10.0612 12.0574 3.4516 25 14 8.2501 13.6978 2.1478 26 1 6.9381 13.4622 1.4933 27 1 8.0816 14.6701 3.2575 28 1 9.2091 14.2426 1.1535 29 6 7.5516 6.0328 1.7067 30 6 7.2126 4.6748 1.2962 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.7210 2.9435 -1.5337 37 1 3.0090 1.1869 -2.0160 38 1 5.9878 2.4963 0.6279 39 1 5.1415 3.1476 3.4563 40 1 6.8625 3.5637 3.4776 41 1 5.9261 4.9272 5.1607 42 1 4.4852 5.2929 4.1932 43 1 6.2657 7.1589 4.4665 44 1 5.6334 6.8485 2.8378 45 1 8.5203 7.3561 4.6526 46 1 9.4656 7.1137 3.1639 47 1 9.5052 9.7124 3.6306 48 1 10.5737 12.8737 3.5607 49 1 8.5352 6.2843 1.3099 50 1 6.8189 6.7205 1.2844 51 1 7.9439 3.9834 1.7147 52 1 7.2474 4.6125 0.2086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327148527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:25 Heat of formation + Delta-G solvation = -79.037401 kcal Electronic energy + Delta-G solvation = -29664.843815 eV Core-core repulsion = 25663.484378 eV Total energy + Delta-G solvation = -4001.359437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50751 -40.82366 -39.24762 -37.96960 -36.48161 -35.71071 -33.78137 -33.33597 -33.15725 -32.65291 -29.39518 -27.14830 -26.41757 -25.36378 -24.83247 -24.28458 -22.12159 -21.51992 -21.23737 -20.85057 -20.59582 -19.78305 -18.29339 -17.77694 -17.58244 -16.81936 -16.66294 -16.32986 -16.00322 -15.82605 -15.74712 -15.61232 -15.35223 -15.23043 -14.96529 -14.73779 -14.10843 -13.99204 -13.71989 -13.52443 -13.50775 -13.36380 -13.06349 -12.98988 -12.79129 -12.71844 -12.45744 -12.34213 -12.18248 -12.15925 -11.93338 -11.92062 -11.83481 -11.65613 -11.40560 -11.31464 -11.20850 -11.01857 -10.88865 -10.72233 -10.07738 -10.02956 -9.17261 -8.49457 -5.98859 1.31646 1.37548 1.49649 1.51010 2.00663 2.12562 2.26122 2.86137 2.93694 3.16986 3.24020 3.60877 3.65156 3.77742 3.87071 3.97162 4.06471 4.17746 4.21740 4.28536 4.34472 4.35760 4.43210 4.45898 4.48935 4.52408 4.57357 4.66244 4.76773 4.78422 4.90231 4.91596 4.94755 4.99633 5.03575 5.13087 5.15497 5.19569 5.22963 5.23854 5.30098 5.34968 5.38109 5.39514 5.49449 5.57970 5.89168 6.03016 6.10825 6.56426 6.60798 7.09357 7.30407 7.52909 8.08343 8.66452 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.002017 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.089162 B =13875.796865 C =14459.455793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.128 4.128 4 H 0.086 0.914 5 C -0.139 4.139 6 C -0.188 4.188 7 H 0.157 0.843 8 C 0.532 3.468 9 O -0.592 6.592 10 N -0.706 5.706 11 C 0.151 3.849 12 H 0.043 0.957 13 C -0.105 4.105 14 C -0.100 4.100 15 C 0.067 3.933 16 N -0.485 5.485 17 C 0.049 3.951 18 C 0.406 3.594 19 O -0.628 6.628 20 N -0.570 5.570 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.989 3.011 26 H -0.278 1.278 27 H -0.270 1.270 28 H -0.269 1.269 29 C 0.051 3.949 30 C -0.103 4.103 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.418 0.582 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.023 0.977 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.072 0.928 50 H 0.020 0.980 51 H 0.100 0.900 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -27.017 -5.949 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.147 4.147 4 H 0.104 0.896 5 C -0.176 4.176 6 C -0.209 4.209 7 H 0.174 0.826 8 C 0.320 3.680 9 O -0.472 6.472 10 N -0.357 5.357 11 C 0.046 3.954 12 H 0.061 0.939 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.063 4.063 16 N -0.207 5.207 17 C -0.082 4.082 18 C 0.193 3.807 19 O -0.515 6.515 20 N -0.206 5.206 21 C -0.463 4.463 22 H 0.092 0.908 23 C -0.211 4.211 24 N -0.557 5.557 25 Si 0.813 3.187 26 H -0.203 1.203 27 H -0.196 1.196 28 H -0.194 1.194 29 C -0.077 4.077 30 C -0.141 4.141 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.153 0.847 38 H 0.255 0.745 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.038 0.962 51 H 0.118 0.882 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.025 -26.766 -5.707 28.255 hybrid contribution -0.025 2.285 -0.315 2.307 sum -7.049 -24.480 -6.022 26.177 Atomic orbital electron populations 1.21757 0.95320 1.02260 1.01600 1.21143 0.96166 0.91988 1.03178 1.22482 0.91057 0.99514 1.01602 0.89617 1.23185 1.00824 1.03035 0.90542 1.22380 0.98133 0.98293 1.02078 0.82592 1.20371 0.82334 0.85997 0.79307 1.90703 1.55316 1.50455 1.50754 1.45906 1.06858 1.28067 1.54890 1.20587 0.95660 0.87322 0.91826 0.93877 1.21459 1.02664 0.97041 0.93177 1.21826 0.98419 0.93929 0.99721 1.21741 0.89749 0.96105 0.98659 1.62215 1.08580 1.38140 1.11766 1.22360 0.98191 0.85258 1.02416 1.22193 0.86400 0.87392 0.84763 1.90512 1.25127 1.87023 1.48871 1.42082 1.21131 1.06750 1.50680 1.19646 1.05528 0.86203 1.34967 0.90806 1.25988 0.95723 1.02263 0.97091 1.69666 1.13321 1.30574 1.42157 0.84927 0.78057 0.77436 0.78246 1.20257 1.19563 1.19385 1.20959 1.01388 0.97342 0.88027 1.20746 0.94996 0.96790 1.01567 0.93721 0.92634 0.91274 0.89668 0.91079 0.90138 0.84697 0.74475 0.93030 0.89545 0.90465 0.93783 0.93956 0.95809 0.87126 0.86551 0.76907 0.91246 0.90932 0.96172 0.88151 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.87 71.98 0.71 -0.99 16 2 C -0.09 -0.94 6.22 30.59 0.19 -0.75 16 3 C -0.13 -2.09 5.25 -10.79 -0.06 -2.14 16 4 H 0.09 1.97 7.60 -2.38 -0.02 1.96 16 5 C -0.14 -1.91 9.88 30.60 0.30 -1.61 16 6 C -0.19 -2.90 5.91 -11.54 -0.07 -2.96 16 7 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 8 C 0.53 12.91 7.42 87.66 0.65 13.56 16 9 O -0.59 -20.88 15.92 -3.03 -0.05 -20.93 16 10 N -0.71 -13.95 4.99 -444.00 -2.22 -16.17 16 11 C 0.15 3.86 2.12 44.69 0.09 3.95 16 12 H 0.04 1.53 6.61 -2.39 -0.02 1.51 16 13 C -0.10 -2.60 5.12 30.16 0.15 -2.44 16 14 C -0.10 -2.91 6.14 31.34 0.19 -2.72 16 15 C 0.07 2.38 3.75 87.16 0.33 2.70 16 16 N -0.49 -15.30 4.45 -916.39 -4.08 -19.38 16 17 C 0.05 1.66 5.54 85.56 0.47 2.13 16 18 C 0.41 18.90 7.03 87.66 0.62 19.51 16 19 O -0.63 -33.96 11.98 -3.07 -0.04 -33.99 16 20 N -0.57 -29.02 5.29 -306.98 -1.62 -30.65 16 21 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 22 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 25 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 C 0.05 1.57 4.19 83.94 0.35 1.92 16 30 C -0.10 -2.29 5.02 28.92 0.15 -2.14 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.59 7.88 -2.39 -0.02 0.58 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.14 1.02 8.03 -2.39 -0.02 1.00 16 38 H 0.42 4.88 8.61 -92.71 -0.80 4.09 16 39 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 40 H 0.09 1.84 7.39 -2.38 -0.02 1.82 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.62 7.32 -2.39 -0.02 1.61 16 44 H 0.02 1.03 5.46 -2.39 -0.01 1.02 16 45 H 0.11 3.33 8.10 -2.38 -0.02 3.31 16 46 H 0.12 3.32 7.95 -2.39 -0.02 3.30 16 47 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 50 H 0.02 0.81 5.91 -2.39 -0.01 0.79 16 51 H 0.10 1.73 7.60 -2.39 -0.02 1.71 16 52 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.70 405.77 -0.93 -75.64 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -0.60 Total: 39.33 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.36 Total: 9.69 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -7.64 Total: -115.28 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -0.08 Total: -54.92 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.70 -0.93 -75.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327148527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.402 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds