Wall clock time and date at job start Tue Mar 31 2020 19:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47475 * 2 1 4 4 H 1.09005 * 115.54942 * 29.33511 * 3 2 1 5 5 C 1.53072 * 117.49538 * 243.60529 * 3 2 1 6 6 C 1.53003 * 117.49947 * 174.99949 * 3 2 1 7 7 H 1.08994 * 117.49835 * 359.97438 * 6 3 2 8 8 C 1.50698 * 117.49747 * 214.97782 * 6 3 2 9 9 O 1.21280 * 120.00260 * 0.09268 * 8 6 3 10 10 N 1.34778 * 119.99658 * 180.08515 * 8 6 3 11 11 C 1.46502 * 119.99839 * 180.02562 * 10 8 6 12 12 H 1.08999 * 108.82488 * 36.49872 * 11 10 8 13 13 C 1.54166 * 108.77231 * 278.03963 * 11 10 8 14 14 C 1.53826 * 111.96890 * 197.73774 * 13 11 10 15 15 C 1.50820 * 111.62311 * 319.04516 * 14 13 11 16 16 N 1.47638 * 108.05355 * 95.05240 * 15 14 13 17 17 C 1.46896 * 110.99696 * 150.34694 * 16 15 14 18 18 C 1.50696 * 109.47452 * 298.89387 * 17 16 15 19 19 O 1.21292 * 119.99879 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99700 * 359.71718 * 21 20 18 23 23 C 1.38942 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00016 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46819 * 59.99994 * 25 23 21 27 27 H 1.48503 * 109.47158 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47620 * 300.00141 * 25 23 21 29 29 C 1.39775 * 114.75755 * 277.20097 * 16 15 14 30 30 C 1.50748 * 108.85115 * 155.00438 * 11 10 8 31 31 H 1.08995 * 109.47142 * 59.99508 * 1 2 3 32 32 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46913 * 299.99751 * 1 2 3 34 34 H 1.09002 * 109.46698 * 239.99756 * 2 1 3 35 35 H 1.08999 * 109.46884 * 120.00907 * 2 1 3 36 36 H 1.09005 * 117.51111 * 145.03697 * 5 3 2 37 37 H 1.08998 * 117.49632 * 359.97438 * 5 3 2 38 38 H 0.96999 * 120.00326 * 0.02562 * 10 8 6 39 39 H 1.08995 * 108.98259 * 318.37778 * 13 11 10 40 40 H 1.08998 * 108.98146 * 77.10080 * 13 11 10 41 41 H 1.09000 * 109.04496 * 79.59440 * 14 13 11 42 42 H 1.08997 * 109.05434 * 198.56308 * 14 13 11 43 43 H 1.09006 * 109.74060 * 335.41747 * 15 14 13 44 44 H 1.08993 * 109.74442 * 214.69589 * 15 14 13 45 45 H 1.09000 * 109.47017 * 178.89425 * 17 16 15 46 46 H 1.08996 * 109.47227 * 58.89745 * 17 16 15 47 47 H 0.96999 * 120.00047 * 359.97438 * 20 18 17 48 48 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 49 49 H 1.09007 * 109.01961 * 182.86159 * 29 16 15 50 50 H 1.08996 * 109.02108 * 301.76145 * 29 16 15 51 51 H 1.08999 * 109.54809 * 93.86156 * 30 11 10 52 52 H 1.09005 * 109.55124 * 333.58627 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4818 5 6 2.8448 1.9074 -1.2163 6 6 3.5503 1.6577 0.1183 7 1 4.1803 0.7718 0.1965 8 6 4.0230 2.8618 0.8914 9 8 3.2160 3.6157 1.3928 10 7 5.3426 3.1009 1.0257 11 6 5.8022 4.2712 1.7777 12 1 5.1332 4.4307 2.6234 13 6 5.7448 5.5064 0.8570 14 6 6.5986 6.6666 1.3968 15 6 6.4616 6.8086 2.8921 16 7 7.5733 6.0718 3.5254 17 6 7.9451 6.6815 4.8090 18 6 8.4036 8.0984 4.5781 19 8 8.4186 8.5554 3.4547 20 7 8.7970 8.8576 5.6199 21 6 9.2136 10.1468 5.4098 22 1 9.2309 10.5524 4.4090 23 6 9.6186 10.9297 6.4839 24 7 9.6019 10.4347 7.7011 25 14 10.1870 12.6860 6.1976 26 1 9.0864 13.4677 5.5787 27 1 10.5623 13.3025 7.4954 28 1 11.3633 12.6842 5.2913 29 6 7.3595 4.6977 3.6667 30 6 7.1906 4.0007 2.2990 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 2.7226 2.9427 -1.5350 37 1 3.0108 1.1855 -2.0158 38 1 5.9880 2.4982 0.6244 39 1 6.1089 5.2286 -0.1320 40 1 4.7098 5.8375 0.7721 41 1 7.6445 6.4827 1.1512 42 1 6.2795 7.5942 0.9217 43 1 5.5094 6.3884 3.2161 44 1 6.5132 7.8617 3.1682 45 1 8.7529 6.1077 5.2633 46 1 7.0818 6.6829 5.4743 47 1 8.7846 8.4922 6.5183 48 1 9.8843 10.9814 8.4509 49 1 8.2101 4.2575 4.1871 50 1 6.4589 4.5374 4.2595 51 1 7.9265 4.3924 1.5968 52 1 7.3330 2.9265 2.4171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327148529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:28 Heat of formation + Delta-G solvation = -73.431724 kcal Electronic energy + Delta-G solvation = -29331.045154 eV Core-core repulsion = 25329.928797 eV Total energy + Delta-G solvation = -4001.116357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48098 -40.68832 -39.41266 -38.03661 -36.50191 -35.79702 -34.12073 -33.21501 -32.97680 -32.27825 -29.40526 -27.05819 -26.58475 -25.56639 -24.78435 -24.22604 -22.18586 -21.50123 -21.07559 -20.84788 -20.51953 -19.85293 -18.29542 -17.75384 -17.51811 -16.84830 -16.66319 -16.45377 -16.11365 -15.79696 -15.72290 -15.45149 -15.41625 -15.14206 -14.94046 -14.90906 -14.27088 -13.79400 -13.54845 -13.51886 -13.46797 -13.37458 -13.16101 -12.98987 -12.93086 -12.73903 -12.50673 -12.41087 -12.19111 -12.13633 -12.09937 -11.93310 -11.87258 -11.72379 -11.37185 -11.32948 -11.24004 -11.02271 -10.72631 -10.21590 -10.07298 -9.96014 -9.09762 -8.44431 -5.92695 1.40290 1.41780 1.48541 1.52597 2.08783 2.11102 2.29835 2.81488 2.86477 3.22566 3.36585 3.59948 3.72968 3.77152 3.81582 3.90093 4.04187 4.11399 4.19428 4.21071 4.28441 4.31847 4.42937 4.46600 4.48694 4.54725 4.56708 4.58615 4.68248 4.72100 4.77488 4.78487 4.89905 4.95710 5.00169 5.05042 5.11710 5.15412 5.20173 5.22617 5.29665 5.38084 5.42687 5.46593 5.48584 5.53609 5.93857 6.12537 6.56112 6.58731 6.64187 7.15350 7.27979 7.59646 8.15341 8.72786 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.001775 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.531561 B =15767.505362 C =15840.658652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.137 4.137 6 C -0.190 4.190 7 H 0.154 0.846 8 C 0.533 3.467 9 O -0.591 6.591 10 N -0.708 5.708 11 C 0.152 3.848 12 H 0.054 0.946 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.072 3.928 16 N -0.542 5.542 17 C 0.061 3.939 18 C 0.441 3.559 19 O -0.608 6.608 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.271 1.271 29 C 0.074 3.926 30 C -0.113 4.113 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.418 0.582 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.057 0.943 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.093 0.907 50 H 0.016 0.984 51 H 0.084 0.916 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -25.131 -14.427 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.147 4.147 4 H 0.105 0.895 5 C -0.174 4.174 6 C -0.211 4.211 7 H 0.172 0.828 8 C 0.322 3.678 9 O -0.471 6.471 10 N -0.360 5.360 11 C 0.047 3.953 12 H 0.073 0.927 13 C -0.154 4.154 14 C -0.134 4.134 15 C -0.054 4.054 16 N -0.267 5.267 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.494 6.494 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.056 4.056 30 C -0.151 4.151 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.078 0.922 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.112 0.888 50 H 0.034 0.966 51 H 0.103 0.897 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.653 -24.198 -14.927 30.362 hybrid contribution -0.176 1.053 1.148 1.568 sum -10.829 -23.145 -13.779 29.031 Atomic orbital electron populations 1.21757 0.95319 1.02227 1.01632 1.21144 0.96176 0.92151 1.03097 1.22484 0.91089 0.99428 1.01730 0.89473 1.23194 1.00648 1.03136 0.90414 1.22385 0.98111 0.98390 1.02192 0.82815 1.20340 0.82406 0.85867 0.79226 1.90695 1.55278 1.50760 1.50383 1.46079 1.06898 1.27843 1.55151 1.20784 0.96219 0.84737 0.93512 0.92738 1.22201 0.99100 0.94590 0.99472 1.21125 1.00732 0.97263 0.94306 1.21737 0.89949 0.98165 0.95572 1.58392 1.41440 1.03447 1.23373 1.21716 1.01411 0.92502 0.91375 1.20744 0.82727 0.88819 0.84854 1.90478 1.59518 1.75147 1.24231 1.41939 1.58304 1.12216 1.08905 1.19624 1.41967 0.89477 0.95035 0.90255 1.26008 0.97167 1.03868 0.94256 1.69671 1.48187 1.39216 0.99188 0.85006 0.78637 0.77110 0.77676 1.19911 1.19575 1.19661 1.21027 1.00643 0.86700 0.97209 1.21723 0.94852 1.01894 0.96644 0.92558 0.91392 0.93693 0.89743 0.91211 0.89825 0.84879 0.74450 0.90541 0.93988 0.90971 0.92984 0.95188 0.92443 0.86832 0.92224 0.77141 0.91408 0.88838 0.96594 0.89723 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.87 71.98 0.71 -0.82 16 2 C -0.09 -0.84 6.22 30.59 0.19 -0.65 16 3 C -0.13 -1.87 5.25 -10.77 -0.06 -1.92 16 4 H 0.09 1.82 7.60 -2.38 -0.02 1.81 16 5 C -0.14 -1.59 9.88 30.62 0.30 -1.29 16 6 C -0.19 -2.54 5.91 -11.54 -0.07 -2.61 16 7 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 8 C 0.53 11.43 7.52 87.66 0.66 12.09 16 9 O -0.59 -18.84 15.93 -3.03 -0.05 -18.89 16 10 N -0.71 -11.92 4.95 -444.13 -2.20 -14.12 16 11 C 0.15 3.36 1.94 44.65 0.09 3.45 16 12 H 0.05 1.55 6.02 -2.39 -0.01 1.54 16 13 C -0.11 -2.90 5.42 31.27 0.17 -2.73 16 14 C -0.10 -2.95 5.41 30.16 0.16 -2.78 16 15 C 0.07 2.53 4.62 85.45 0.39 2.92 16 16 N -0.54 -17.39 3.76 -917.80 -3.45 -20.84 16 17 C 0.06 2.12 5.45 85.56 0.47 2.59 16 18 C 0.44 21.04 7.20 87.66 0.63 21.68 16 19 O -0.61 -33.10 13.87 -3.07 -0.04 -33.15 16 20 N -0.58 -29.79 5.29 -306.99 -1.62 -31.41 16 21 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 24 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 25 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.07 1.74 4.93 88.07 0.43 2.18 16 30 C -0.11 -2.09 5.20 30.35 0.16 -1.93 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.50 7.88 -2.39 -0.02 0.48 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.13 0.78 8.03 -2.39 -0.02 0.76 16 38 H 0.42 3.90 8.49 -92.71 -0.79 3.11 16 39 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 2.32 7.26 -2.39 -0.02 2.30 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.03 1.01 6.66 -2.38 -0.02 1.00 16 44 H 0.06 2.47 5.61 -2.39 -0.01 2.46 16 45 H 0.11 3.41 7.83 -2.39 -0.02 3.39 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.39 19.49 7.90 -92.71 -0.73 18.76 16 48 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 49 H 0.09 1.88 7.80 -2.38 -0.02 1.86 16 50 H 0.02 0.39 7.54 -2.39 -0.02 0.38 16 51 H 0.08 1.66 7.11 -2.39 -0.02 1.64 16 52 H 0.11 1.30 7.88 -2.38 -0.02 1.28 16 Total: -1.00 -73.82 408.20 -0.12 -73.94 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.59 Total: 37.19 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.52 Total: 11.77 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -6.99 Total: -116.34 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.09 Total: -52.03 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.82 -0.12 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327148529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.506 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds