Wall clock time and date at job start Tue Mar 31 2020 19:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 H 1.09000 * 115.54875 * 29.32846 * 3 2 1 5 5 C 1.53005 * 117.49823 * 243.61951 * 3 2 1 6 6 C 1.52992 * 60.00081 * 252.51102 * 5 3 2 7 7 H 1.09004 * 117.52115 * 107.47788 * 6 5 3 8 8 C 1.50699 * 117.50085 * 252.50990 * 6 5 3 9 9 O 1.21281 * 119.99987 * 68.62169 * 8 6 5 10 10 N 1.34771 * 120.00213 * 248.62341 * 8 6 5 11 11 C 1.47430 * 125.64929 * 0.04072 * 10 8 6 12 12 C 1.54906 * 104.83479 * 155.83313 * 11 10 8 13 13 C 1.55160 * 101.58109 * 37.01295 * 12 11 10 14 14 C 1.47030 * 125.65135 * 179.97438 * 10 8 6 15 15 H 1.09002 * 109.87502 * 300.66861 * 14 10 8 16 16 C 1.52997 * 109.88251 * 61.67496 * 14 10 8 17 17 N 1.46899 * 109.47254 * 305.00160 * 16 14 10 18 18 C 1.46902 * 111.00255 * 293.95367 * 17 16 14 19 19 C 1.46901 * 111.00103 * 169.99667 * 17 16 14 20 20 C 1.50696 * 109.47399 * 190.00043 * 19 17 16 21 21 O 1.21290 * 119.99984 * 0.02562 * 20 19 17 22 22 N 1.34773 * 120.00148 * 180.02562 * 20 19 17 23 23 C 1.37101 * 120.00092 * 179.97438 * 22 20 19 24 24 H 1.07997 * 119.99776 * 0.02562 * 23 22 20 25 25 C 1.38945 * 120.00114 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99941 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00138 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47194 * 60.00539 * 27 25 23 29 29 H 1.48504 * 109.47276 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47491 * 300.00697 * 27 25 23 31 31 H 1.09005 * 109.47034 * 300.00627 * 1 2 3 32 32 H 1.08999 * 109.46642 * 59.99884 * 1 2 3 33 33 H 1.08991 * 109.47276 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47025 * 240.00086 * 2 1 3 35 35 H 1.08999 * 109.46642 * 120.00116 * 2 1 3 36 36 H 1.09003 * 117.49578 * 145.01916 * 5 3 2 37 37 H 1.09000 * 117.49593 * 0.02562 * 5 3 2 38 38 H 1.08999 * 110.36312 * 274.67686 * 11 10 8 39 39 H 1.08995 * 110.36380 * 36.99637 * 11 10 8 40 40 H 1.08994 * 111.00273 * 155.07992 * 12 11 10 41 41 H 1.09001 * 111.00808 * 278.93789 * 12 11 10 42 42 H 1.09002 * 110.72494 * 206.13637 * 13 12 11 43 43 H 1.08996 * 110.72283 * 82.85754 * 13 12 11 44 44 H 1.09002 * 109.47153 * 185.00156 * 16 14 10 45 45 H 1.09001 * 109.46832 * 65.00347 * 16 14 10 46 46 H 1.09005 * 109.46528 * 59.99744 * 18 17 16 47 47 H 1.09000 * 109.46785 * 179.97438 * 18 17 16 48 48 H 1.08997 * 109.47044 * 300.00388 * 18 17 16 49 49 H 1.08998 * 109.47407 * 310.00536 * 19 17 16 50 50 H 1.09007 * 109.46608 * 69.99971 * 19 17 16 51 51 H 0.97001 * 120.00167 * 0.02562 * 22 20 19 52 52 H 0.97008 * 120.00289 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8441 1.9075 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1965 8 6 4.0230 2.8619 0.8914 9 8 3.2159 3.6166 1.3914 10 7 5.3425 3.1001 1.0271 11 6 6.4271 2.2694 0.4729 12 6 7.6368 3.2287 0.3473 13 6 7.4711 4.1068 1.6157 14 6 5.9389 4.2322 1.7513 15 1 5.6010 5.1715 1.3135 16 6 5.5408 4.1735 3.2274 17 7 4.0770 4.1199 3.3381 18 6 3.4669 5.3682 2.8610 19 6 3.6636 3.8251 4.7166 20 6 2.1850 3.5359 4.7467 21 8 1.5390 3.5714 3.7207 22 7 1.5803 3.2379 5.9137 23 6 0.2349 2.9753 5.9413 24 1 -0.3402 3.0069 5.0277 25 6 -0.3884 2.6676 7.1443 26 7 0.3115 2.6287 8.2558 27 14 -2.2212 2.3091 7.1817 28 1 -2.5145 1.1386 6.3161 29 1 -2.6392 2.0117 8.5753 30 1 -2.9674 3.4924 6.6834 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7214 2.9427 -1.5344 37 1 3.0093 1.1858 -2.0159 38 1 6.6618 1.4497 1.1520 39 1 6.1461 1.8829 -0.5067 40 1 8.5768 2.6777 0.3738 41 1 7.5647 3.8320 -0.5577 42 1 7.9263 5.0863 1.4690 43 1 7.8962 3.6094 2.4874 44 1 5.9116 5.0615 3.7394 45 1 5.9726 3.2834 3.6850 46 1 3.7329 5.5262 1.8158 47 1 2.3829 5.3013 2.9537 48 1 3.8323 6.2029 3.4591 49 1 4.2113 2.9566 5.0823 50 1 3.8789 4.6843 5.3519 51 1 2.0967 3.2099 6.7344 52 1 -0.1237 2.4142 9.0959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328765572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:02 Heat of formation + Delta-G solvation = -10.883838 kcal Electronic energy + Delta-G solvation = -31418.534274 eV Core-core repulsion = 27420.130197 eV Total energy + Delta-G solvation = -3998.404077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.18208 -38.36440 -37.91973 -36.15745 -35.70638 -33.62784 -31.96920 -31.28631 -31.05051 -30.28919 -27.52652 -26.00560 -24.94008 -24.33779 -23.59021 -22.60679 -21.34832 -20.77451 -19.99648 -18.89533 -18.40530 -17.66133 -16.97597 -16.58626 -15.86538 -15.11312 -14.86749 -14.70075 -14.51590 -14.37797 -14.19779 -13.93146 -13.82289 -13.51941 -13.34488 -13.20288 -12.74273 -12.64076 -12.42171 -12.03762 -11.97002 -11.88221 -11.77911 -11.46987 -11.42945 -11.24934 -11.15481 -11.12761 -11.05766 -10.93121 -10.81404 -10.64877 -10.61476 -10.34192 -10.06922 -10.02855 -9.73980 -9.28408 -8.79862 -8.41859 -7.99004 -7.76336 -7.29723 -6.26563 -3.65934 3.07650 3.27463 3.29012 3.32905 3.37992 4.10567 4.14374 4.17417 4.34640 4.41284 4.60915 4.74782 4.81152 4.98332 5.02868 5.06765 5.25550 5.30132 5.33088 5.37231 5.40666 5.46093 5.51692 5.51876 5.56752 5.61138 5.64357 5.67631 5.72208 5.73655 5.93298 5.94395 5.96246 6.01856 6.03768 6.13925 6.16807 6.27176 6.31322 6.34366 6.37559 6.53082 6.63323 6.70519 7.04740 7.63825 7.69027 7.82803 7.98820 8.24108 8.82001 8.95876 9.36098 9.74515 10.29730 10.92025 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.003899 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.953177 B = 7179.064187 C = 9274.557837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.111 4.111 4 H 0.124 0.876 5 C -0.158 4.158 6 C -0.177 4.177 7 H 0.108 0.892 8 C 0.540 3.460 9 O -0.443 6.443 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.127 4.127 14 C 0.147 3.853 15 H 0.069 0.931 16 C 0.041 3.959 17 N -0.485 5.485 18 C 0.056 3.944 19 C 0.042 3.958 20 C 0.449 3.551 21 O -0.553 6.553 22 N -0.575 5.575 23 C -0.290 4.290 24 H 0.100 0.900 25 C 0.019 3.981 26 N -0.908 5.908 27 Si 0.927 3.073 28 H -0.275 1.275 29 H -0.286 1.286 30 H -0.275 1.275 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.091 0.909 48 H -0.014 1.014 49 H 0.077 0.923 50 H 0.038 0.962 51 H 0.389 0.611 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.648 -1.461 -16.460 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.129 4.129 4 H 0.142 0.858 5 C -0.196 4.196 6 C -0.198 4.198 7 H 0.127 0.873 8 C 0.327 3.673 9 O -0.311 6.311 10 N -0.354 5.354 11 C -0.020 4.020 12 C -0.170 4.170 13 C -0.166 4.166 14 C 0.042 3.958 15 H 0.087 0.913 16 C -0.088 4.088 17 N -0.209 5.209 18 C -0.091 4.091 19 C -0.089 4.089 20 C 0.234 3.766 21 O -0.435 6.435 22 N -0.214 5.214 23 C -0.420 4.420 24 H 0.118 0.882 25 C -0.182 4.182 26 N -0.551 5.551 27 Si 0.755 3.245 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.004 0.996 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.222 0.778 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.358 -1.446 -17.001 22.300 hybrid contribution 0.054 0.256 1.358 1.383 sum 14.413 -1.190 -15.644 21.304 Atomic orbital electron populations 1.21734 0.95251 1.01280 1.02429 1.21102 0.96343 0.93960 1.01443 1.22466 0.91937 0.98643 0.99866 0.85789 1.23033 1.03678 1.02442 0.90409 1.22206 0.97563 0.98974 1.01103 0.87349 1.19139 0.80868 0.86521 0.80810 1.90976 1.51933 1.46166 1.42025 1.48250 1.04752 1.26982 1.55398 1.22171 0.87248 0.93987 0.98604 1.22747 0.98016 0.97966 0.98253 1.22668 0.94527 1.00830 0.98564 1.21504 0.91729 0.90514 0.92010 0.91277 1.22639 0.90538 1.00129 0.95505 1.62013 1.04225 1.35836 1.18808 1.22303 1.02581 0.86105 0.98115 1.21891 0.96783 1.00078 0.90177 1.19774 0.88305 0.83934 0.84626 1.90543 1.65523 1.55016 1.32404 1.41875 1.09247 1.62459 1.07794 1.19609 0.83927 1.43212 0.95256 0.88189 1.25190 1.00113 0.98007 0.94864 1.69612 1.36601 1.50123 0.98716 0.85976 0.82660 0.79014 0.76880 1.20041 1.21141 1.20081 0.91847 0.92867 0.93018 0.92407 0.91541 0.88811 0.88704 0.92144 0.91039 0.90214 0.90811 0.90348 0.90481 0.95077 0.91305 0.92021 0.89079 0.99565 0.90431 0.94454 0.77836 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.87 37.16 0.37 -1.53 16 2 C -0.09 -1.15 6.22 -26.73 -0.17 -1.32 16 3 C -0.11 -1.60 5.25 -90.62 -0.48 -2.08 16 4 H 0.12 2.28 7.60 -51.93 -0.39 1.88 16 5 C -0.16 -1.86 9.88 -26.73 -0.26 -2.12 16 6 C -0.18 -2.40 4.98 -91.78 -0.46 -2.86 16 7 H 0.11 1.29 7.78 -51.93 -0.40 0.89 16 8 C 0.54 8.65 7.17 -10.99 -0.08 8.58 16 9 O -0.44 -8.86 9.35 0.35 0.00 -8.86 16 10 N -0.62 -7.92 3.06 -163.01 -0.50 -8.42 16 11 C 0.10 0.94 6.48 -2.53 -0.02 0.92 16 12 C -0.13 -0.91 7.08 -24.58 -0.17 -1.09 16 13 C -0.13 -1.03 6.48 -24.89 -0.16 -1.19 16 14 C 0.15 1.76 2.89 -66.95 -0.19 1.57 16 15 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 16 C 0.04 0.59 4.58 -3.83 -0.02 0.57 16 17 N -0.48 -8.99 1.91 -244.37 -0.47 -9.46 16 18 C 0.06 1.08 6.93 60.07 0.42 1.50 16 19 C 0.04 0.85 5.45 -4.98 -0.03 0.82 16 20 C 0.45 11.34 7.47 -10.99 -0.08 11.26 16 21 O -0.55 -15.64 13.17 0.34 0.00 -15.64 16 22 N -0.58 -15.45 5.29 -10.97 -0.06 -15.51 16 23 C -0.29 -8.45 9.68 -14.93 -0.14 -8.60 16 24 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 25 C 0.02 0.52 5.50 -17.47 -0.10 0.43 16 26 N -0.91 -25.80 13.05 55.50 0.72 -25.08 16 27 Si 0.93 21.98 29.55 -169.99 -5.02 16.96 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 7.87 -51.93 -0.41 0.20 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.59 7.77 -51.93 -0.40 0.19 16 44 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 46 H 0.06 1.14 5.37 -51.93 -0.28 0.86 16 47 H 0.09 2.13 5.80 -51.93 -0.30 1.83 16 48 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 49 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 50 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 51 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 52 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -33.55 404.13 -9.88 -43.43 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -9.08 Total: 11.62 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.57 Total: 4.87 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.30 Total: -58.47 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.01 Total: -24.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.55 -9.88 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328765572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.547 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds