Wall clock time and date at job start Tue Mar 31 2020 19:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 H 1.09000 * 115.54875 * 29.32846 * 3 2 1 5 5 C 1.53005 * 117.49823 * 243.61951 * 3 2 1 6 6 C 1.52992 * 60.00081 * 252.51102 * 5 3 2 7 7 H 1.09004 * 117.52115 * 107.47788 * 6 5 3 8 8 C 1.50699 * 117.50085 * 252.50990 * 6 5 3 9 9 O 1.21281 * 119.99987 * 68.62169 * 8 6 5 10 10 N 1.34771 * 120.00213 * 248.62341 * 8 6 5 11 11 C 1.47430 * 125.64929 * 0.04072 * 10 8 6 12 12 C 1.54906 * 104.83479 * 155.83313 * 11 10 8 13 13 C 1.55160 * 101.58109 * 37.01295 * 12 11 10 14 14 C 1.47030 * 125.65135 * 179.97438 * 10 8 6 15 15 H 1.09002 * 109.87502 * 300.66861 * 14 10 8 16 16 C 1.52997 * 109.88251 * 61.67496 * 14 10 8 17 17 N 1.46899 * 109.47254 * 305.00160 * 16 14 10 18 18 C 1.46902 * 111.00255 * 293.95367 * 17 16 14 19 19 C 1.46901 * 111.00103 * 169.99667 * 17 16 14 20 20 C 1.50696 * 109.47399 * 190.00043 * 19 17 16 21 21 O 1.21290 * 119.99984 * 0.02562 * 20 19 17 22 22 N 1.34773 * 120.00148 * 180.02562 * 20 19 17 23 23 C 1.37101 * 120.00092 * 179.97438 * 22 20 19 24 24 H 1.07997 * 119.99776 * 0.02562 * 23 22 20 25 25 C 1.38945 * 120.00114 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99941 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00138 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47194 * 60.00539 * 27 25 23 29 29 H 1.48504 * 109.47276 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47491 * 300.00697 * 27 25 23 31 31 H 1.09005 * 109.47034 * 300.00627 * 1 2 3 32 32 H 1.08999 * 109.46642 * 59.99884 * 1 2 3 33 33 H 1.08991 * 109.47276 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47025 * 240.00086 * 2 1 3 35 35 H 1.08999 * 109.46642 * 120.00116 * 2 1 3 36 36 H 1.09003 * 117.49578 * 145.01916 * 5 3 2 37 37 H 1.09000 * 117.49593 * 0.02562 * 5 3 2 38 38 H 1.08999 * 110.36312 * 274.67686 * 11 10 8 39 39 H 1.08995 * 110.36380 * 36.99637 * 11 10 8 40 40 H 1.08994 * 111.00273 * 155.07992 * 12 11 10 41 41 H 1.09001 * 111.00808 * 278.93789 * 12 11 10 42 42 H 1.09002 * 110.72494 * 206.13637 * 13 12 11 43 43 H 1.08996 * 110.72283 * 82.85754 * 13 12 11 44 44 H 1.09002 * 109.47153 * 185.00156 * 16 14 10 45 45 H 1.09001 * 109.46832 * 65.00347 * 16 14 10 46 46 H 1.09005 * 109.46528 * 59.99744 * 18 17 16 47 47 H 1.09000 * 109.46785 * 179.97438 * 18 17 16 48 48 H 1.08997 * 109.47044 * 300.00388 * 18 17 16 49 49 H 1.08998 * 109.47407 * 310.00536 * 19 17 16 50 50 H 1.09007 * 109.46608 * 69.99971 * 19 17 16 51 51 H 0.97001 * 120.00167 * 0.02562 * 22 20 19 52 52 H 0.97008 * 120.00289 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8441 1.9075 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1965 8 6 4.0230 2.8619 0.8914 9 8 3.2159 3.6166 1.3914 10 7 5.3425 3.1001 1.0271 11 6 6.4271 2.2694 0.4729 12 6 7.6368 3.2287 0.3473 13 6 7.4711 4.1068 1.6157 14 6 5.9389 4.2322 1.7513 15 1 5.6010 5.1715 1.3135 16 6 5.5408 4.1735 3.2274 17 7 4.0770 4.1199 3.3381 18 6 3.4669 5.3682 2.8610 19 6 3.6636 3.8251 4.7166 20 6 2.1850 3.5359 4.7467 21 8 1.5390 3.5714 3.7207 22 7 1.5803 3.2379 5.9137 23 6 0.2349 2.9753 5.9413 24 1 -0.3402 3.0069 5.0277 25 6 -0.3884 2.6676 7.1443 26 7 0.3115 2.6287 8.2558 27 14 -2.2212 2.3091 7.1817 28 1 -2.5145 1.1386 6.3161 29 1 -2.6392 2.0117 8.5753 30 1 -2.9674 3.4924 6.6834 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.7214 2.9427 -1.5344 37 1 3.0093 1.1858 -2.0159 38 1 6.6618 1.4497 1.1520 39 1 6.1461 1.8829 -0.5067 40 1 8.5768 2.6777 0.3738 41 1 7.5647 3.8320 -0.5577 42 1 7.9263 5.0863 1.4690 43 1 7.8962 3.6094 2.4874 44 1 5.9116 5.0615 3.7394 45 1 5.9726 3.2834 3.6850 46 1 3.7329 5.5262 1.8158 47 1 2.3829 5.3013 2.9537 48 1 3.8323 6.2029 3.4591 49 1 4.2113 2.9566 5.0823 50 1 3.8789 4.6843 5.3519 51 1 2.0967 3.2099 6.7344 52 1 -0.1237 2.4142 9.0959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328765572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:01 Heat of formation + Delta-G solvation = -31.651372 kcal Electronic energy + Delta-G solvation = -31419.434822 eV Core-core repulsion = 27420.130197 eV Total energy + Delta-G solvation = -3999.304625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26411 -40.13842 -39.09673 -37.35683 -37.15491 -35.75584 -33.22509 -33.00864 -32.19090 -31.34644 -29.19707 -27.35815 -26.36891 -25.81502 -24.63187 -23.75664 -22.37602 -21.74863 -21.06895 -20.85718 -19.80868 -19.44989 -18.11076 -17.81462 -17.32875 -16.59725 -16.47775 -16.15039 -16.07337 -15.65074 -15.48247 -15.33103 -15.05841 -14.95038 -14.67751 -14.17108 -14.05010 -13.80443 -13.54906 -13.50042 -13.26903 -13.15985 -13.05122 -12.97932 -12.90552 -12.56970 -12.45744 -12.41209 -12.25519 -12.19320 -12.12083 -11.98667 -11.90071 -11.83894 -11.49661 -11.40219 -11.09603 -10.78237 -10.14107 -10.05124 -9.94060 -9.41055 -8.68299 -8.43675 -5.91369 1.37674 1.38104 1.49495 1.95180 2.13751 2.27136 2.30022 2.88771 3.04177 3.22516 3.49692 3.63189 3.78970 3.83117 3.92830 3.96759 4.01048 4.25497 4.28068 4.32120 4.33795 4.39031 4.41303 4.48264 4.53091 4.54233 4.57773 4.66373 4.69081 4.73784 4.77661 4.85148 4.94369 4.95756 5.00607 5.06930 5.12320 5.16763 5.19832 5.26574 5.28646 5.37061 5.42317 5.43367 5.51839 5.75560 5.96654 6.21795 6.44144 6.66954 6.93849 7.18365 7.62455 7.81059 8.22251 8.74291 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.003899 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.953177 B = 7179.064187 C = 9274.557837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.136 4.136 4 H 0.069 0.931 5 C -0.125 4.125 6 C -0.179 4.179 7 H 0.132 0.868 8 C 0.527 3.473 9 O -0.498 6.498 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.142 3.858 15 H 0.054 0.946 16 C 0.041 3.959 17 N -0.497 5.497 18 C 0.078 3.922 19 C 0.054 3.946 20 C 0.442 3.558 21 O -0.588 6.588 22 N -0.584 5.584 23 C -0.326 4.326 24 H 0.073 0.927 25 C -0.015 4.015 26 N -0.925 5.925 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.268 1.268 30 H -0.274 1.274 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.041 0.959 48 H -0.003 1.003 49 H 0.095 0.905 50 H 0.052 0.948 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.392 -2.733 -17.651 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.155 4.155 4 H 0.088 0.912 5 C -0.162 4.162 6 C -0.200 4.200 7 H 0.149 0.851 8 C 0.314 3.686 9 O -0.370 6.370 10 N -0.352 5.352 11 C -0.026 4.026 12 C -0.158 4.158 13 C -0.156 4.156 14 C 0.038 3.962 15 H 0.072 0.928 16 C -0.088 4.088 17 N -0.222 5.222 18 C -0.070 4.070 19 C -0.077 4.077 20 C 0.229 3.771 21 O -0.471 6.471 22 N -0.223 5.223 23 C -0.455 4.455 24 H 0.091 0.909 25 C -0.214 4.214 26 N -0.567 5.567 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.192 1.192 30 H -0.199 1.199 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.015 0.985 49 H 0.114 0.886 50 H 0.070 0.930 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.178 -2.727 -18.193 25.170 hybrid contribution -0.754 0.688 1.699 1.982 sum 16.423 -2.039 -16.495 23.366 Atomic orbital electron populations 1.21726 0.95770 1.02017 1.01100 1.21070 0.95893 0.92713 1.02371 1.22288 0.92111 0.98696 1.02388 0.91227 1.23078 1.00354 1.02747 0.90049 1.22269 0.96789 0.98894 1.02025 0.85063 1.19662 0.81673 0.86725 0.80524 1.90966 1.53597 1.47999 1.44409 1.48333 1.04642 1.27518 1.54748 1.22458 0.86807 0.94210 0.99164 1.22746 0.98042 0.97312 0.97681 1.22662 0.90908 1.02316 0.99700 1.21639 0.94590 0.89795 0.90219 0.92819 1.22780 0.87347 1.01106 0.97529 1.61938 1.07156 1.35627 1.17443 1.21943 0.99488 0.86946 0.98633 1.21741 0.92792 1.01343 0.91841 1.20767 0.90530 0.82259 0.83538 1.90542 1.67082 1.55937 1.33555 1.41939 1.08760 1.63143 1.08433 1.19547 0.85217 1.45772 0.95013 0.90878 1.25981 1.04449 0.96938 0.94033 1.69678 1.38264 1.49648 0.99113 0.85037 0.77162 0.78734 0.77665 1.19792 1.19203 1.19921 0.95539 0.91873 0.91127 0.88910 0.92895 0.89814 0.84917 0.91544 0.89748 0.87497 0.90396 0.88653 0.89476 0.93648 0.90487 0.91668 0.94036 0.98489 0.88640 0.93002 0.77489 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.87 71.98 0.71 -3.19 16 2 C -0.08 -2.09 6.22 30.60 0.19 -1.90 16 3 C -0.14 -4.11 5.25 -10.79 -0.06 -4.16 16 4 H 0.07 2.88 7.60 -2.39 -0.02 2.87 16 5 C -0.13 -2.79 9.88 30.59 0.30 -2.49 16 6 C -0.18 -4.77 4.98 -11.54 -0.06 -4.83 16 7 H 0.13 2.85 7.78 -2.39 -0.02 2.83 16 8 C 0.53 17.20 7.17 87.66 0.63 17.83 16 9 O -0.50 -21.23 9.35 1.94 0.02 -21.21 16 10 N -0.62 -15.10 3.06 -788.04 -2.42 -17.52 16 11 C 0.10 1.43 6.48 86.85 0.56 2.00 16 12 C -0.12 -1.17 7.08 31.99 0.23 -0.94 16 13 C -0.12 -1.48 6.48 31.78 0.21 -1.28 16 14 C 0.14 3.19 2.89 45.34 0.13 3.33 16 15 H 0.05 1.38 6.87 -2.39 -0.02 1.36 16 16 C 0.04 1.11 4.58 86.30 0.39 1.50 16 17 N -0.50 -18.83 1.91 -927.04 -1.77 -20.61 16 18 C 0.08 3.14 6.93 127.69 0.88 4.02 16 19 C 0.05 2.22 5.45 85.56 0.47 2.69 16 20 C 0.44 23.57 7.47 87.66 0.66 24.23 16 21 O -0.59 -35.82 13.17 1.92 0.03 -35.79 16 22 N -0.58 -32.79 5.29 -307.00 -1.62 -34.41 16 23 C -0.33 -19.88 9.68 84.04 0.81 -19.06 16 24 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 25 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 26 N -0.93 -52.87 13.05 21.66 0.28 -52.59 16 27 Si 0.99 45.69 29.55 68.60 2.03 47.71 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 31 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.13 1.98 8.03 -2.39 -0.02 1.96 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 0.97 7.77 -2.39 -0.02 0.95 16 44 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 45 H 0.08 1.96 7.81 -2.39 -0.02 1.94 16 46 H 0.06 2.55 5.37 -2.38 -0.01 2.53 16 47 H 0.04 2.09 5.80 -2.39 -0.01 2.08 16 48 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.10 3.54 7.93 -2.39 -0.02 3.52 16 50 H 0.05 1.97 8.12 -2.38 -0.02 1.95 16 51 H 0.39 21.05 7.90 -92.71 -0.73 20.32 16 52 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -79.56 404.13 3.24 -76.32 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: 0.17 Total: 40.75 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.52 Total: 17.35 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -5.53 Total: -125.13 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: 0.04 Total: -57.00 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.56 3.24 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328765572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds