Wall clock time and date at job start Tue Mar 31 2020 19:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46775 * 2 1 4 4 H 1.08997 * 109.87146 * 52.84916 * 3 2 1 5 5 C 1.54374 * 109.89863 * 173.98804 * 3 2 1 6 6 C 1.55156 * 102.92268 * 141.57841 * 5 3 2 7 7 C 1.54913 * 101.61228 * 324.54350 * 6 5 3 8 8 H 1.08992 * 110.36720 * 278.15029 * 7 6 5 9 9 C 1.53003 * 110.36521 * 155.93811 * 7 6 5 10 10 N 1.47016 * 109.88212 * 291.82501 * 3 2 1 11 11 C 1.34784 * 125.64815 * 61.61274 * 10 3 2 12 12 O 1.21350 * 119.99638 * 6.37505 * 11 10 3 13 13 C 1.49443 * 119.99967 * 186.37880 * 11 10 3 14 14 O 1.21352 * 120.00176 * 272.24099 * 13 11 10 15 15 N 1.34773 * 120.00167 * 92.23744 * 13 11 10 16 16 C 1.47082 * 120.87964 * 354.72930 * 15 13 11 17 17 C 1.53705 * 108.27569 * 128.75498 * 16 15 13 18 18 N 1.46899 * 109.25484 * 54.08324 * 17 16 15 19 19 C 1.46905 * 110.99877 * 172.60925 * 18 17 16 20 20 C 1.50693 * 109.47111 * 59.33829 * 19 18 17 21 21 H 1.08007 * 120.00424 * 5.09463 * 20 19 18 22 22 C 1.37884 * 120.00185 * 185.08852 * 20 19 18 23 23 N 1.31516 * 119.99805 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99547 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47364 * 89.99722 * 24 22 20 26 26 H 1.48505 * 109.46694 * 209.99649 * 24 22 20 27 27 H 1.48500 * 109.47048 * 329.99228 * 24 22 20 28 28 C 1.46895 * 111.26983 * 296.75735 * 18 17 16 29 29 C 1.47079 * 120.88577 * 175.01247 * 15 13 11 30 30 H 1.08998 * 109.47654 * 317.83761 * 1 2 3 31 31 H 1.09001 * 109.46800 * 77.83344 * 1 2 3 32 32 H 1.08998 * 109.47039 * 197.83254 * 1 2 3 33 33 H 1.08998 * 109.47203 * 240.00343 * 2 1 3 34 34 H 1.09000 * 109.46875 * 119.99490 * 2 1 3 35 35 H 1.09006 * 110.70585 * 23.23041 * 5 3 2 36 36 H 1.09000 * 110.75129 * 259.94750 * 5 3 2 37 37 H 1.08991 * 111.00267 * 206.45726 * 6 5 3 38 38 H 1.08992 * 111.00399 * 82.63365 * 6 5 3 39 39 H 1.08999 * 109.46873 * 48.79064 * 9 7 6 40 40 H 1.09000 * 109.47128 * 168.79227 * 9 7 6 41 41 H 1.08998 * 109.47007 * 288.79826 * 9 7 6 42 42 H 1.09001 * 109.63364 * 248.51951 * 16 15 13 43 43 H 1.08993 * 109.62718 * 9.10740 * 16 15 13 44 44 H 1.09001 * 109.64647 * 294.08665 * 17 16 15 45 45 H 1.08998 * 109.42157 * 173.94849 * 17 16 15 46 46 H 1.08996 * 109.46837 * 179.34301 * 19 18 17 47 47 H 1.08995 * 109.46633 * 299.33658 * 19 18 17 48 48 H 0.96999 * 119.99134 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.49859 * 303.14383 * 28 18 17 50 50 H 1.09003 * 109.49447 * 183.06668 * 28 18 17 51 51 H 1.09006 * 109.62416 * 350.89249 * 29 15 13 52 52 H 1.09000 * 109.63338 * 111.27864 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5798 1.9982 0.8170 5 6 3.5761 1.4569 0.1520 6 6 4.0074 2.6113 -0.7906 7 6 2.9822 2.4719 -1.9436 8 1 3.2987 1.6962 -2.6409 9 6 2.8163 3.8066 -2.6730 10 7 1.7220 2.0853 -1.2834 11 6 0.4834 2.2871 -1.7754 12 8 -0.4885 2.0320 -1.0951 13 6 0.3073 2.8248 -3.1585 14 8 0.2853 4.0237 -3.3453 15 7 0.1728 1.9783 -4.1986 16 6 0.3113 0.5259 -4.0126 17 6 -0.9169 -0.1588 -4.6332 18 7 -1.0611 0.2772 -6.0286 19 6 -2.1159 -0.4838 -6.7116 20 6 -3.4248 -0.2853 -5.9917 21 1 -3.4869 0.4069 -5.1650 22 6 -4.5433 -0.9872 -6.3886 23 7 -5.6855 -0.8142 -5.7600 24 14 -4.4357 -2.1847 -7.8182 25 1 -4.0757 -3.5324 -7.3090 26 1 -5.7490 -2.2509 -8.5082 27 1 -3.3972 -1.7228 -8.7738 28 6 -1.3159 1.7215 -6.1120 29 6 -0.1101 2.4827 -5.5509 30 1 -0.3634 0.7617 0.6898 31 1 -0.3633 0.2166 -1.0046 32 1 -0.3633 -0.9783 0.3147 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0047 0.5100 -0.1766 36 1 3.8603 1.6733 1.1818 37 1 5.0246 2.4611 -1.1521 38 1 3.9094 3.5773 -0.2955 39 1 3.7984 4.2142 -2.9126 40 1 2.2534 3.6503 -3.5932 41 1 2.2791 4.5062 -2.0326 42 1 1.2176 0.1779 -4.5082 43 1 0.3613 0.2962 -2.9483 44 1 -1.8110 0.1143 -4.0727 45 1 -0.7835 -1.2401 -4.6019 46 1 -2.2095 -0.1329 -7.7393 47 1 -1.8580 -1.5428 -6.7113 48 1 -6.4723 -1.3078 -6.0395 49 1 -2.2044 1.9683 -5.5309 50 1 -1.4718 2.0038 -7.1532 51 1 -0.3388 3.5475 -5.5040 52 1 0.7578 2.3225 -6.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329849972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:45 Heat of formation + Delta-G solvation = -38.465493 kcal Electronic energy + Delta-G solvation = -32073.395660 eV Core-core repulsion = 28073.795553 eV Total energy + Delta-G solvation = -3999.600107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29799 -39.47807 -37.87831 -37.54902 -34.63310 -34.06744 -32.34326 -32.00378 -30.86728 -30.34434 -28.81545 -26.26194 -25.98750 -24.76381 -23.29510 -22.82770 -22.12011 -21.59433 -20.87455 -19.61214 -18.40126 -17.83693 -17.11882 -16.88216 -16.41940 -16.25194 -15.24189 -14.80968 -14.64621 -14.52159 -14.40316 -14.22317 -14.15958 -13.77895 -13.71346 -13.49830 -13.13598 -12.97345 -12.80053 -12.50564 -12.45442 -12.28664 -12.12191 -11.98179 -11.76672 -11.40629 -11.34067 -11.22630 -11.09465 -11.02895 -10.91742 -10.76768 -10.70101 -10.58949 -10.47929 -10.33261 -10.09259 -9.57590 -9.39979 -8.75924 -8.64948 -8.63259 -7.37333 -6.14286 -4.15773 2.09342 2.22870 2.59210 3.23720 3.29425 3.32240 3.34550 4.01044 4.15813 4.34857 4.39348 4.47074 4.70419 4.74367 4.89268 4.97492 5.05213 5.13282 5.16705 5.21138 5.26706 5.35012 5.35744 5.43742 5.45310 5.52517 5.58131 5.62364 5.69620 5.72464 5.80966 5.83967 5.87550 5.94046 5.97143 6.07366 6.16376 6.23160 6.26904 6.49971 6.57533 6.60221 6.66162 6.82855 6.96917 7.15491 7.25362 7.46747 7.80738 7.88608 7.90520 7.92373 8.38303 8.87774 9.47132 10.98520 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.003341 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.534438 B = 8378.298425 C = 9074.307277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.127 4.127 7 C 0.123 3.877 8 H 0.081 0.919 9 C -0.173 4.173 10 N -0.600 5.600 11 C 0.526 3.474 12 O -0.490 6.490 13 C 0.521 3.479 14 O -0.522 6.522 15 N -0.587 5.587 16 C 0.109 3.891 17 C 0.048 3.952 18 N -0.533 5.533 19 C 0.156 3.844 20 C -0.556 4.556 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 C 0.046 3.954 29 C 0.116 3.884 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.030 0.970 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.050 0.950 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.920 3.777 9.165 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.032 3.968 4 H 0.097 0.903 5 C -0.166 4.166 6 C -0.165 4.165 7 C 0.020 3.980 8 H 0.099 0.901 9 C -0.230 4.230 10 N -0.338 5.338 11 C 0.309 3.691 12 O -0.363 6.363 13 C 0.304 3.696 14 O -0.398 6.398 15 N -0.321 5.321 16 C -0.014 4.014 17 C -0.081 4.081 18 N -0.257 5.257 19 C 0.030 3.970 20 C -0.595 4.595 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.083 4.083 29 C -0.006 4.006 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.100 0.900 51 H 0.109 0.891 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.517 4.142 9.154 24.657 hybrid contribution -1.053 -0.627 -0.264 1.254 sum 21.464 3.515 8.890 23.496 Atomic orbital electron populations 1.22176 0.93921 1.00594 1.04216 1.21994 0.97728 0.94974 1.02247 1.21814 0.95180 0.93864 0.85900 0.90316 1.22727 0.93583 0.99510 1.00776 1.22841 0.98600 0.99413 0.95666 1.22090 0.83511 0.97492 0.94945 0.90134 1.22479 1.02793 0.95865 1.01896 1.48645 1.04866 1.59107 1.21164 1.19815 0.82746 0.78565 0.87945 1.90873 1.38813 1.47575 1.59082 1.20024 0.77549 0.86984 0.85093 1.90777 1.50826 1.14310 1.83894 1.48220 1.68204 1.07535 1.08154 1.22173 1.00169 0.78454 1.00596 1.22329 0.95800 0.99391 0.90568 1.62435 1.46502 1.03427 1.13295 1.20177 0.88753 0.93474 0.94609 1.21667 0.93387 1.26318 1.18118 0.90790 1.24986 0.95213 0.96496 0.96299 1.69938 1.00552 1.41952 1.40852 0.86783 0.77662 0.81749 0.83100 1.20176 1.21291 1.18863 1.22301 0.95600 0.89195 1.01229 1.21951 0.98840 0.99265 0.80561 0.92015 0.90934 0.93868 0.91676 0.91046 0.90116 0.89824 0.89601 0.90286 0.91348 0.90764 0.91257 0.90381 0.90600 0.92696 0.90108 0.95216 0.95455 0.92601 0.93165 0.89981 0.89101 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.12 37.16 0.30 -1.66 16 2 C -0.13 -1.25 5.44 -26.73 -0.15 -1.40 16 3 C 0.14 1.27 3.05 -66.93 -0.20 1.06 16 4 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 5 C -0.13 -0.77 6.48 -24.87 -0.16 -0.93 16 6 C -0.13 -0.78 6.49 -24.58 -0.16 -0.94 16 7 C 0.12 1.09 3.63 -66.41 -0.24 0.85 16 8 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 9 C -0.17 -1.76 7.54 37.16 0.28 -1.48 16 10 N -0.60 -6.88 2.98 -156.07 -0.47 -7.34 16 11 C 0.53 8.09 4.75 -11.59 -0.06 8.03 16 12 O -0.49 -8.91 12.62 5.50 0.07 -8.84 16 13 C 0.52 8.52 4.99 -11.59 -0.06 8.46 16 14 O -0.52 -9.46 13.94 5.49 0.08 -9.39 16 15 N -0.59 -9.09 3.00 -172.68 -0.52 -9.61 16 16 C 0.11 1.58 6.56 -3.36 -0.02 1.55 16 17 C 0.05 0.88 5.17 -3.46 -0.02 0.87 16 18 N -0.53 -10.34 4.83 -235.47 -1.14 -11.48 16 19 C 0.16 3.58 4.18 -4.98 -0.02 3.56 16 20 C -0.56 -15.19 8.30 -34.44 -0.29 -15.47 16 21 H 0.07 2.25 6.13 -52.48 -0.32 1.93 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 24 Si 0.88 20.98 27.37 -169.99 -4.65 16.33 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.26 -6.01 6.69 56.52 0.38 -5.63 16 28 C 0.05 0.84 5.24 -3.70 -0.02 0.82 16 29 C 0.12 1.76 6.58 -3.60 -0.02 1.73 16 30 H 0.06 0.87 7.17 -51.93 -0.37 0.50 16 31 H 0.07 1.13 4.35 -51.93 -0.23 0.91 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.07 0.92 5.19 -51.93 -0.27 0.65 16 41 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.06 5.27 -51.93 -0.27 0.78 16 44 H 0.05 1.21 6.79 -51.93 -0.35 0.86 16 45 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 46 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 47 H 0.03 0.62 7.29 -51.93 -0.38 0.25 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.05 1.10 6.92 -51.93 -0.36 0.74 16 50 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 51 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 52 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -32.53 384.65 -9.74 -42.27 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.76 Total: 1.68 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.93 Total: 7.02 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -1.35 Total: -54.87 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.15 Total: -18.23 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.53 -9.74 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329849972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.807 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds