Wall clock time and date at job start Tue Mar 31 2020 19:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47267 * 2 1 4 4 H 1.09007 * 109.87329 * 53.58235 * 3 2 1 5 5 C 1.54319 * 109.88423 * 292.56786 * 3 2 1 6 6 C 1.55408 * 102.83172 * 218.48159 * 5 3 2 7 7 C 1.54906 * 101.66245 * 35.33295 * 6 5 3 8 8 H 1.08998 * 110.36423 * 204.23393 * 7 6 5 9 9 C 1.53009 * 110.45453 * 81.96517 * 7 6 5 10 10 N 1.47026 * 109.88646 * 174.59743 * 3 2 1 11 11 C 1.34779 * 125.64672 * 298.32636 * 10 3 2 12 12 O 1.21342 * 120.00057 * 4.65876 * 11 10 3 13 13 C 1.49452 * 119.99681 * 184.65637 * 11 10 3 14 14 O 1.21348 * 120.00103 * 353.81672 * 13 11 10 15 15 N 1.34773 * 119.99840 * 173.81996 * 13 11 10 16 16 C 1.47082 * 120.88147 * 182.61486 * 15 13 11 17 17 C 1.53698 * 108.27639 * 128.75355 * 16 15 13 18 18 N 1.46899 * 109.25755 * 54.08189 * 17 16 15 19 19 C 1.46898 * 111.00186 * 172.60818 * 18 17 16 20 20 C 1.50704 * 109.46738 * 294.30452 * 19 18 17 21 21 H 1.08000 * 120.00183 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99712 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99891 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47685 * 90.00072 * 24 22 20 26 26 H 1.48508 * 109.46981 * 210.00048 * 24 22 20 27 27 H 1.48500 * 109.47155 * 329.99626 * 24 22 20 28 28 C 1.46900 * 111.27000 * 296.75926 * 18 17 16 29 29 C 1.47083 * 120.88360 * 2.89285 * 15 13 11 30 30 H 1.08999 * 109.47352 * 305.01125 * 1 2 3 31 31 H 1.08996 * 109.47236 * 65.01018 * 1 2 3 32 32 H 1.08999 * 109.47609 * 185.01205 * 1 2 3 33 33 H 1.09000 * 109.47099 * 239.99810 * 2 1 3 34 34 H 1.09002 * 109.47283 * 120.00069 * 2 1 3 35 35 H 1.08999 * 110.72228 * 336.75647 * 5 3 2 36 36 H 1.09003 * 110.72401 * 100.02698 * 5 3 2 37 37 H 1.08999 * 110.88864 * 277.27052 * 6 5 3 38 38 H 1.08998 * 111.07187 * 153.48386 * 6 5 3 39 39 H 1.08997 * 109.47155 * 304.52955 * 9 7 6 40 40 H 1.08995 * 109.47003 * 64.53447 * 9 7 6 41 41 H 1.09007 * 109.46462 * 184.53211 * 9 7 6 42 42 H 1.08997 * 109.62709 * 248.51980 * 16 15 13 43 43 H 1.09000 * 109.62768 * 9.10216 * 16 15 13 44 44 H 1.09001 * 109.64724 * 294.08097 * 17 16 15 45 45 H 1.09000 * 109.42140 * 173.95234 * 17 16 15 46 46 H 1.08996 * 109.47008 * 54.29958 * 19 18 17 47 47 H 1.08995 * 109.47132 * 174.30279 * 19 18 17 48 48 H 0.96994 * 119.99564 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.49235 * 303.14227 * 28 18 17 50 50 H 1.08999 * 109.51288 * 183.07673 * 28 18 17 51 51 H 1.09004 * 109.62680 * 350.89912 * 29 15 13 52 52 H 1.08998 * 109.63178 * 111.47390 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5897 1.9947 0.8250 5 6 1.6898 2.1229 -1.3401 6 6 2.9502 2.9849 -1.6291 7 6 4.0804 2.0835 -1.0725 8 1 4.9495 2.6853 -0.8069 9 6 4.4668 1.0158 -2.0982 10 7 3.5044 1.4551 0.1302 11 6 4.2042 0.9727 1.1762 12 8 3.6294 0.3993 2.0780 13 6 5.6880 1.1441 1.2253 14 8 6.2761 1.6161 0.2745 15 7 6.3730 0.7743 2.3255 16 6 7.8255 0.9867 2.4173 17 6 8.1240 1.7124 3.7389 18 7 7.5361 0.9542 4.8513 19 6 7.9451 1.5161 6.1455 20 6 9.4306 1.3359 6.3245 21 1 10.0125 0.8520 5.5540 22 6 10.0467 1.7889 7.4718 23 7 9.3380 2.3786 8.4097 24 14 11.8880 1.5662 7.6933 25 1 12.5994 2.7476 7.1424 26 1 12.1998 1.4304 9.1389 27 1 12.3287 0.3436 6.9749 28 6 6.0724 0.8957 4.7417 29 6 5.6889 0.1422 3.4638 30 1 -0.3634 0.5896 0.8417 31 1 -0.3633 0.4341 -0.9314 32 1 -0.3634 -1.0237 0.0898 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5437 1.3794 -2.1236 36 1 0.8058 2.7517 -1.2340 37 1 2.9052 3.9318 -1.0911 38 1 3.0743 3.1513 -2.6991 39 1 3.5808 0.4485 -2.3834 40 1 4.8905 1.4957 -2.9802 41 1 5.2043 0.3424 -1.6612 42 1 8.3380 0.0248 2.4004 43 1 8.1599 1.5977 1.5789 44 1 7.6929 2.7132 3.7129 45 1 9.2027 1.7841 3.8774 46 1 7.7020 2.5782 6.1736 47 1 7.4173 1.0012 6.9482 48 1 9.7714 2.6969 9.2170 49 1 5.6699 1.9079 4.7018 50 1 5.6630 0.3754 5.6076 51 1 4.6100 0.1946 3.3175 52 1 5.9999 -0.8993 3.5455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329849976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:51 Heat of formation + Delta-G solvation = -41.103851 kcal Electronic energy + Delta-G solvation = -30916.555733 eV Core-core repulsion = 26916.841218 eV Total energy + Delta-G solvation = -3999.714515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23949 -39.54964 -37.98640 -37.53582 -34.48826 -34.09513 -32.40199 -31.99071 -30.73192 -30.08219 -28.47903 -26.68131 -25.79584 -24.67571 -23.48011 -22.96438 -22.09212 -21.55590 -20.74641 -19.88416 -18.86038 -17.44508 -16.85496 -16.45952 -16.22431 -15.85864 -15.46281 -14.86852 -14.73716 -14.62457 -14.42387 -14.26850 -14.05813 -13.84054 -13.70015 -13.50687 -13.24607 -13.02900 -12.82446 -12.64134 -12.61154 -12.40601 -12.19370 -11.98114 -11.78680 -11.50528 -11.37389 -11.23935 -11.16720 -10.97808 -10.88382 -10.80969 -10.72678 -10.67869 -10.54416 -10.35899 -9.87361 -9.32774 -9.02921 -8.86651 -8.54438 -8.43867 -7.29341 -6.04706 -4.06557 1.41360 2.18579 3.18334 3.30764 3.33675 3.37207 3.41438 4.03123 4.16606 4.36196 4.40916 4.45814 4.73427 4.84841 4.88516 4.90791 5.05067 5.07945 5.22993 5.30748 5.31781 5.33651 5.37868 5.45133 5.47220 5.54049 5.59318 5.63784 5.70831 5.72918 5.76161 5.78604 5.84338 5.85541 5.93619 5.96544 6.05584 6.12905 6.30386 6.33349 6.46221 6.51315 6.62897 7.05133 7.24617 7.30596 7.39107 7.67786 7.76544 8.01378 8.04384 8.14829 8.50293 9.00746 9.57878 11.06146 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.002458 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.975098 B =11389.896481 C =12014.968769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.135 3.865 4 H 0.080 0.920 5 C -0.126 4.126 6 C -0.133 4.133 7 C 0.120 3.880 8 H 0.112 0.888 9 C -0.151 4.151 10 N -0.583 5.583 11 C 0.527 3.473 12 O -0.508 6.508 13 C 0.504 3.496 14 O -0.530 6.530 15 N -0.569 5.569 16 C 0.111 3.889 17 C 0.053 3.947 18 N -0.538 5.538 19 C 0.193 3.807 20 C -0.509 4.509 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.043 3.957 29 C 0.057 3.943 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.024 0.976 45 H 0.098 0.902 46 H -0.009 1.009 47 H 0.032 0.968 48 H 0.262 0.738 49 H 0.024 0.976 50 H 0.081 0.919 51 H 0.150 0.850 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.087 -1.339 -22.111 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.164 4.164 6 C -0.171 4.171 7 C 0.017 3.983 8 H 0.129 0.871 9 C -0.209 4.209 10 N -0.316 5.316 11 C 0.311 3.689 12 O -0.386 6.386 13 C 0.286 3.714 14 O -0.408 6.408 15 N -0.301 5.301 16 C -0.011 4.011 17 C -0.076 4.076 18 N -0.263 5.263 19 C 0.069 3.931 20 C -0.548 4.548 21 H 0.082 0.918 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.197 1.197 28 C -0.086 4.086 29 C -0.064 4.064 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.117 0.883 46 H 0.008 0.992 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.100 0.900 51 H 0.166 0.834 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.821 -1.821 -21.883 27.661 hybrid contribution 0.812 0.731 0.515 1.208 sum -16.009 -1.090 -21.368 26.722 Atomic orbital electron populations 1.21707 0.94986 1.02011 1.01767 1.21937 0.96278 0.95894 1.03462 1.21781 0.79394 0.97094 0.98474 0.90187 1.22784 0.98387 0.99199 0.96042 1.22930 0.94001 0.98190 1.01966 1.22263 0.97479 0.94273 0.84277 0.87072 1.22031 1.01376 0.98991 0.98527 1.48491 1.07150 1.57774 1.18203 1.20043 0.88315 0.79136 0.81361 1.90329 1.70912 1.41756 1.35575 1.19819 0.87624 0.80279 0.83683 1.90670 1.70021 1.44951 1.35145 1.48170 1.09301 1.56809 1.15838 1.22137 0.78264 1.01714 0.98948 1.22404 1.02028 0.93783 0.89428 1.62115 1.05917 1.53694 1.04557 1.19723 0.96514 0.92783 0.84125 1.21150 0.92502 1.37707 1.03403 0.91810 1.25000 0.98498 0.95270 0.95849 1.69960 1.35761 1.39797 1.08233 0.86493 0.85130 0.78525 0.77247 1.20735 1.21253 1.19737 1.22397 0.90660 0.98370 0.97207 1.23421 1.02550 0.96620 0.83828 0.92495 0.92704 0.92445 0.91835 0.90082 0.90225 0.89890 0.90479 0.89545 0.92790 0.91374 0.91938 0.90323 0.89220 0.95748 0.88343 0.99166 0.95002 0.92888 0.95816 0.90022 0.83352 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.69 37.15 0.36 -0.61 16 2 C -0.14 -1.18 5.41 -26.74 -0.14 -1.33 16 3 C 0.14 1.19 2.91 -66.96 -0.19 0.99 16 4 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 5 C -0.13 -0.76 5.36 -24.76 -0.13 -0.89 16 6 C -0.13 -0.87 6.57 -24.45 -0.16 -1.03 16 7 C 0.12 1.14 2.70 -66.42 -0.18 0.96 16 8 H 0.11 1.28 6.05 -51.93 -0.31 0.97 16 9 C -0.15 -1.32 9.34 37.16 0.35 -0.98 16 10 N -0.58 -6.49 2.71 -156.10 -0.42 -6.91 16 11 C 0.53 7.34 7.65 -11.58 -0.09 7.25 16 12 O -0.51 -7.65 11.83 5.50 0.07 -7.58 16 13 C 0.50 7.76 7.73 -11.59 -0.09 7.67 16 14 O -0.53 -8.42 12.55 5.50 0.07 -8.36 16 15 N -0.57 -9.24 3.00 -172.68 -0.52 -9.75 16 16 C 0.11 1.83 6.62 -3.36 -0.02 1.81 16 17 C 0.05 1.03 5.47 -3.46 -0.02 1.01 16 18 N -0.54 -11.63 4.62 -235.47 -1.09 -12.72 16 19 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 20 C -0.51 -14.16 8.41 -34.44 -0.29 -14.45 16 21 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 24 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 29 C 0.06 0.92 6.39 -3.60 -0.02 0.90 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.29 7.64 -51.93 -0.40 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 34 H 0.08 0.90 6.56 -51.93 -0.34 0.56 16 35 H 0.08 0.42 7.35 -51.93 -0.38 0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.43 8.04 -51.93 -0.42 0.01 16 39 H 0.05 0.42 7.41 -51.93 -0.38 0.03 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.68 7.59 -51.92 -0.39 0.29 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.40 7.08 -51.93 -0.37 1.03 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 46 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 47 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 51 H 0.15 2.35 3.86 -56.70 -0.22 2.13 16 52 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -30.95 396.12 -9.96 -40.90 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.97 Total: -0.69 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.78 Total: 8.57 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.29 Total: -55.33 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.13 Total: -15.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.95 -9.96 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329849976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.202 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds