Wall clock time and date at job start Tue Mar 31 2020 19:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47267 * 2 1 4 4 H 1.09007 * 109.87329 * 53.58235 * 3 2 1 5 5 C 1.54319 * 109.88423 * 292.56786 * 3 2 1 6 6 C 1.55408 * 102.83172 * 218.48159 * 5 3 2 7 7 C 1.54906 * 101.66245 * 35.33295 * 6 5 3 8 8 H 1.08998 * 110.36423 * 204.23393 * 7 6 5 9 9 C 1.53009 * 110.45453 * 81.96517 * 7 6 5 10 10 N 1.47026 * 109.88646 * 174.59743 * 3 2 1 11 11 C 1.34779 * 125.64672 * 298.32636 * 10 3 2 12 12 O 1.21342 * 120.00057 * 4.65876 * 11 10 3 13 13 C 1.49452 * 119.99681 * 184.65637 * 11 10 3 14 14 O 1.21348 * 120.00103 * 353.81672 * 13 11 10 15 15 N 1.34773 * 119.99840 * 173.81996 * 13 11 10 16 16 C 1.47082 * 120.88147 * 182.61486 * 15 13 11 17 17 C 1.53698 * 108.27639 * 128.75355 * 16 15 13 18 18 N 1.46899 * 109.25755 * 54.08189 * 17 16 15 19 19 C 1.46898 * 111.00186 * 172.60818 * 18 17 16 20 20 C 1.50704 * 109.46738 * 294.30452 * 19 18 17 21 21 H 1.08000 * 120.00183 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99712 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99891 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47685 * 90.00072 * 24 22 20 26 26 H 1.48508 * 109.46981 * 210.00048 * 24 22 20 27 27 H 1.48500 * 109.47155 * 329.99626 * 24 22 20 28 28 C 1.46900 * 111.27000 * 296.75926 * 18 17 16 29 29 C 1.47083 * 120.88360 * 2.89285 * 15 13 11 30 30 H 1.08999 * 109.47352 * 305.01125 * 1 2 3 31 31 H 1.08996 * 109.47236 * 65.01018 * 1 2 3 32 32 H 1.08999 * 109.47609 * 185.01205 * 1 2 3 33 33 H 1.09000 * 109.47099 * 239.99810 * 2 1 3 34 34 H 1.09002 * 109.47283 * 120.00069 * 2 1 3 35 35 H 1.08999 * 110.72228 * 336.75647 * 5 3 2 36 36 H 1.09003 * 110.72401 * 100.02698 * 5 3 2 37 37 H 1.08999 * 110.88864 * 277.27052 * 6 5 3 38 38 H 1.08998 * 111.07187 * 153.48386 * 6 5 3 39 39 H 1.08997 * 109.47155 * 304.52955 * 9 7 6 40 40 H 1.08995 * 109.47003 * 64.53447 * 9 7 6 41 41 H 1.09007 * 109.46462 * 184.53211 * 9 7 6 42 42 H 1.08997 * 109.62709 * 248.51980 * 16 15 13 43 43 H 1.09000 * 109.62768 * 9.10216 * 16 15 13 44 44 H 1.09001 * 109.64724 * 294.08097 * 17 16 15 45 45 H 1.09000 * 109.42140 * 173.95234 * 17 16 15 46 46 H 1.08996 * 109.47008 * 54.29958 * 19 18 17 47 47 H 1.08995 * 109.47132 * 174.30279 * 19 18 17 48 48 H 0.96994 * 119.99564 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.49235 * 303.14227 * 28 18 17 50 50 H 1.08999 * 109.51288 * 183.07673 * 28 18 17 51 51 H 1.09004 * 109.62680 * 350.89912 * 29 15 13 52 52 H 1.08998 * 109.63178 * 111.47390 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5897 1.9947 0.8250 5 6 1.6898 2.1229 -1.3401 6 6 2.9502 2.9849 -1.6291 7 6 4.0804 2.0835 -1.0725 8 1 4.9495 2.6853 -0.8069 9 6 4.4668 1.0158 -2.0982 10 7 3.5044 1.4551 0.1302 11 6 4.2042 0.9727 1.1762 12 8 3.6294 0.3993 2.0780 13 6 5.6880 1.1441 1.2253 14 8 6.2761 1.6161 0.2745 15 7 6.3730 0.7743 2.3255 16 6 7.8255 0.9867 2.4173 17 6 8.1240 1.7124 3.7389 18 7 7.5361 0.9542 4.8513 19 6 7.9451 1.5161 6.1455 20 6 9.4306 1.3359 6.3245 21 1 10.0125 0.8520 5.5540 22 6 10.0467 1.7889 7.4718 23 7 9.3380 2.3786 8.4097 24 14 11.8880 1.5662 7.6933 25 1 12.5994 2.7476 7.1424 26 1 12.1998 1.4304 9.1389 27 1 12.3287 0.3436 6.9749 28 6 6.0724 0.8957 4.7417 29 6 5.6889 0.1422 3.4638 30 1 -0.3634 0.5896 0.8417 31 1 -0.3633 0.4341 -0.9314 32 1 -0.3634 -1.0237 0.0898 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5437 1.3794 -2.1236 36 1 0.8058 2.7517 -1.2340 37 1 2.9052 3.9318 -1.0911 38 1 3.0743 3.1513 -2.6991 39 1 3.5808 0.4485 -2.3834 40 1 4.8905 1.4957 -2.9802 41 1 5.2043 0.3424 -1.6612 42 1 8.3380 0.0248 2.4004 43 1 8.1599 1.5977 1.5789 44 1 7.6929 2.7132 3.7129 45 1 9.2027 1.7841 3.8774 46 1 7.7020 2.5782 6.1736 47 1 7.4173 1.0012 6.9482 48 1 9.7714 2.6969 9.2170 49 1 5.6699 1.9079 4.7018 50 1 5.6630 0.3754 5.6076 51 1 4.6100 0.1946 3.3175 52 1 5.9999 -0.8993 3.5455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329849976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:50 Heat of formation + Delta-G solvation = -60.697102 kcal Electronic energy + Delta-G solvation = -30917.405360 eV Core-core repulsion = 26916.841218 eV Total energy + Delta-G solvation = -4000.564142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30218 -40.63947 -39.05904 -38.99014 -36.06138 -34.83146 -34.40767 -32.83187 -32.19646 -30.72088 -30.24252 -27.83543 -27.07127 -25.91962 -24.73255 -23.97719 -23.54327 -22.81509 -21.68244 -20.99417 -20.04971 -18.59031 -18.38466 -18.05069 -17.46142 -17.02891 -16.65388 -16.25843 -16.11074 -15.83924 -15.60447 -15.39102 -15.37307 -15.07706 -15.05306 -14.55461 -14.34977 -14.13248 -13.85782 -13.77917 -13.56230 -13.26976 -13.21907 -13.11603 -12.94869 -12.78806 -12.66675 -12.59040 -12.46975 -12.36323 -12.26529 -12.09979 -12.02450 -11.83063 -11.62037 -11.48144 -11.36584 -11.21485 -10.64560 -10.10710 -10.02832 -9.80845 -9.11565 -8.22291 -6.32865 0.25349 1.12332 1.41302 1.42646 1.54400 2.01940 2.23113 2.39748 2.97787 3.09772 3.21265 3.52809 3.65876 3.86506 3.90205 3.98977 4.10204 4.16853 4.19799 4.25058 4.28895 4.36963 4.44390 4.47848 4.52629 4.56160 4.68553 4.74553 4.78082 4.80685 4.87234 4.95621 4.96674 4.97605 5.06300 5.08820 5.10737 5.17021 5.17947 5.21633 5.24407 5.30332 5.34543 5.43412 5.50057 5.61500 5.96060 6.00501 6.18748 6.24540 6.52126 6.54807 6.82243 6.84435 7.37012 8.89148 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.002458 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.975098 B =11389.896481 C =12014.968769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.127 3.873 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.111 3.889 8 H 0.088 0.912 9 C -0.145 4.145 10 N -0.576 5.576 11 C 0.521 3.479 12 O -0.526 6.526 13 C 0.502 3.498 14 O -0.534 6.534 15 N -0.578 5.578 16 C 0.123 3.877 17 C 0.056 3.944 18 N -0.541 5.541 19 C 0.209 3.791 20 C -0.524 4.524 21 H 0.067 0.933 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.972 3.028 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.263 1.263 28 C 0.044 3.956 29 C 0.071 3.929 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.012 0.988 45 H 0.087 0.913 46 H -0.041 1.041 47 H 0.007 0.993 48 H 0.265 0.735 49 H 0.014 0.986 50 H 0.083 0.917 51 H 0.159 0.841 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -1.540 -24.841 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.025 3.975 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.162 4.162 7 C 0.008 3.992 8 H 0.106 0.894 9 C -0.203 4.203 10 N -0.308 5.308 11 C 0.305 3.695 12 O -0.405 6.405 13 C 0.286 3.714 14 O -0.412 6.412 15 N -0.311 5.311 16 C 0.001 3.999 17 C -0.073 4.073 18 N -0.265 5.265 19 C 0.082 3.918 20 C -0.562 4.562 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.576 5.576 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.187 1.187 28 C -0.085 4.085 29 C -0.050 4.050 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.030 0.970 45 H 0.105 0.895 46 H -0.024 1.024 47 H 0.025 0.975 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.102 0.898 51 H 0.175 0.825 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.552 -2.014 -24.674 30.347 hybrid contribution 0.958 0.840 1.298 1.819 sum -16.594 -1.173 -23.376 28.691 Atomic orbital electron populations 1.21679 0.93245 1.02302 1.02749 1.21871 0.97723 0.95360 1.02157 1.22055 0.77626 0.97591 1.00212 0.90874 1.22816 0.98764 0.99407 0.94345 1.22927 0.92664 0.97404 1.03223 1.22432 0.98029 0.94803 0.83895 0.89374 1.21979 1.01303 0.98420 0.98578 1.48641 1.08398 1.56145 1.17627 1.19758 0.87635 0.79866 0.82220 1.90294 1.70773 1.42998 1.36482 1.20154 0.88497 0.79595 0.83199 1.90667 1.70473 1.44852 1.35229 1.48204 1.09180 1.57415 1.16289 1.21968 0.78892 1.01869 0.97136 1.22374 1.01079 0.93505 0.90305 1.62058 1.07889 1.53327 1.03275 1.19380 0.95935 0.90611 0.85826 1.21454 0.93310 1.37710 1.03696 0.91450 1.25948 1.03672 0.94706 0.95407 1.70094 1.37968 1.40700 1.08837 0.85346 0.78821 0.78939 0.77298 1.19805 1.20848 1.18698 1.22470 0.88713 0.98345 0.99000 1.23324 1.03025 0.96243 0.82364 0.92791 0.90620 0.92341 0.91416 0.93100 0.88719 0.87742 0.90532 0.87111 0.91358 0.89661 0.94630 0.89447 0.88085 0.96973 0.89456 1.02371 0.97455 0.92659 0.96767 0.89833 0.82509 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.69 71.98 0.70 -0.88 16 2 C -0.13 -2.10 5.41 30.59 0.17 -1.93 16 3 C 0.13 2.01 2.91 45.34 0.13 2.14 16 4 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 5 C -0.12 -0.97 5.36 31.87 0.17 -0.80 16 6 C -0.12 -1.25 6.57 32.07 0.21 -1.04 16 7 C 0.11 1.93 2.70 45.47 0.12 2.06 16 8 H 0.09 1.98 6.05 -2.39 -0.01 1.96 16 9 C -0.14 -2.25 9.34 71.99 0.67 -1.58 16 10 N -0.58 -12.32 2.71 -766.15 -2.08 -14.40 16 11 C 0.52 14.51 7.65 87.27 0.67 15.18 16 12 O -0.53 -15.96 11.83 -3.22 -0.04 -16.00 16 13 C 0.50 15.46 7.73 87.27 0.67 16.14 16 14 O -0.53 -16.85 12.55 -3.24 -0.04 -16.90 16 15 N -0.58 -18.78 3.00 -818.62 -2.46 -21.24 16 16 C 0.12 4.04 6.62 86.50 0.57 4.61 16 17 C 0.06 2.26 5.47 86.54 0.47 2.73 16 18 N -0.54 -24.13 4.62 -898.90 -4.15 -28.28 16 19 C 0.21 11.37 4.72 85.56 0.40 11.77 16 20 C -0.52 -29.75 8.41 25.60 0.22 -29.54 16 21 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 22 C 0.00 0.04 5.46 84.66 0.46 0.50 16 23 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 24 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 28 C 0.04 1.68 5.62 86.38 0.49 2.17 16 29 C 0.07 2.32 6.39 86.35 0.55 2.88 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.54 7.64 -2.39 -0.02 0.52 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.00 8.02 -2.39 -0.02 0.98 16 34 H 0.05 1.13 6.56 -2.39 -0.02 1.11 16 35 H 0.09 0.57 7.35 -2.39 -0.02 0.56 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.64 8.04 -2.39 -0.02 0.62 16 39 H 0.07 0.86 7.41 -2.39 -0.02 0.84 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.03 0.74 7.59 -2.38 -0.02 0.73 16 42 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.10 3.10 7.08 -2.39 -0.02 3.08 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 3.67 6.67 -2.39 -0.02 3.65 16 46 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 47 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 48 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.08 3.15 7.99 -2.39 -0.02 3.13 16 51 H 0.16 5.01 3.86 -78.00 -0.30 4.71 16 52 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.70 396.12 0.82 -67.88 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.60 Total: 14.74 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.68 Total: 24.40 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -8.41 Total: -120.51 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.08 Total: -32.89 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.70 0.82 -67.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329849976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds