Wall clock time and date at job start Tue Mar 31 2020 19:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 H 1.09002 * 110.00079 * 307.86229 * 3 2 1 5 5 C 1.54322 * 109.88227 * 186.76485 * 3 2 1 6 6 C 1.55156 * 103.10323 * 218.47913 * 5 3 2 7 7 C 1.54910 * 101.58252 * 35.41521 * 6 5 3 8 8 H 1.09001 * 110.36747 * 81.82743 * 7 6 5 9 9 C 1.53000 * 110.36867 * 204.15389 * 7 6 5 10 10 N 1.47325 * 110.06364 * 69.03529 * 3 2 1 11 11 C 1.34776 * 125.61591 * 298.24565 * 10 3 2 12 12 O 1.21350 * 120.00028 * 4.58664 * 11 10 3 13 13 C 1.49445 * 120.00043 * 184.59000 * 11 10 3 14 14 O 1.21352 * 120.00346 * 276.28877 * 13 11 10 15 15 N 1.34779 * 120.00184 * 96.29044 * 13 11 10 16 16 C 1.47086 * 120.87888 * 355.44904 * 15 13 11 17 17 C 1.53695 * 108.27783 * 128.75568 * 16 15 13 18 18 N 1.46900 * 109.25713 * 54.08046 * 17 16 15 19 19 C 1.46898 * 111.00087 * 172.60875 * 18 17 16 20 20 C 1.50696 * 109.47200 * 59.34762 * 19 18 17 21 21 H 1.08004 * 120.00365 * 5.10411 * 20 19 18 22 22 C 1.37884 * 120.00345 * 185.10517 * 20 19 18 23 23 N 1.31508 * 120.00313 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99610 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47453 * 90.00088 * 24 22 20 26 26 H 1.48501 * 109.47187 * 210.00230 * 24 22 20 27 27 H 1.48507 * 109.47421 * 329.99909 * 24 22 20 28 28 C 1.46899 * 111.26746 * 296.75920 * 18 17 16 29 29 C 1.47080 * 120.88311 * 175.72709 * 15 13 11 30 30 H 1.09005 * 109.46943 * 274.36112 * 1 2 3 31 31 H 1.09001 * 109.47575 * 34.35623 * 1 2 3 32 32 H 1.08997 * 109.47057 * 154.36311 * 1 2 3 33 33 H 1.09001 * 109.47078 * 240.00539 * 2 1 3 34 34 H 1.08998 * 109.47633 * 119.99692 * 2 1 3 35 35 H 1.09001 * 110.71917 * 100.02772 * 5 3 2 36 36 H 1.09000 * 110.72244 * 336.93638 * 5 3 2 37 37 H 1.09003 * 111.00505 * 153.49083 * 6 5 3 38 38 H 1.09001 * 111.00832 * 277.30337 * 6 5 3 39 39 H 1.08994 * 109.47013 * 66.67975 * 9 7 6 40 40 H 1.09001 * 109.47190 * 186.68587 * 9 7 6 41 41 H 1.09009 * 109.46593 * 306.68224 * 9 7 6 42 42 H 1.08995 * 109.62497 * 248.52502 * 16 15 13 43 43 H 1.09001 * 109.62756 * 9.09856 * 16 15 13 44 44 H 1.09000 * 109.64771 * 294.08107 * 17 16 15 45 45 H 1.08994 * 109.41988 * 173.94743 * 17 16 15 46 46 H 1.08998 * 109.47120 * 179.35089 * 19 18 17 47 47 H 1.09001 * 109.47144 * 299.34838 * 19 18 17 48 48 H 0.97001 * 120.00438 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.49447 * 303.13727 * 28 18 17 50 50 H 1.09004 * 109.48998 * 183.06450 * 28 18 17 51 51 H 1.08991 * 109.62860 * 350.89541 * 29 15 13 52 52 H 1.08996 * 109.62667 * 111.28342 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5715 2.0036 -0.8087 5 6 3.5736 1.4570 -0.1709 6 6 4.0217 2.6055 0.7712 7 6 3.0119 2.4630 1.9373 8 1 3.3353 1.6825 2.6260 9 6 2.8582 3.7950 2.6743 10 7 1.7416 2.0841 1.2922 11 6 0.5105 2.2883 1.8014 12 8 -0.4649 1.8579 1.2219 13 6 0.3467 3.0449 3.0798 14 8 0.4687 2.4731 4.1432 15 7 0.0634 4.3622 3.0517 16 6 0.0093 5.0957 1.7779 17 6 -1.3208 5.8638 1.7201 18 7 -1.4513 6.6976 2.9224 19 6 -2.6221 7.5797 2.8268 20 6 -3.8669 6.7462 2.6634 21 1 -3.8065 5.6691 2.7161 22 6 -5.0832 7.3585 2.4465 23 7 -6.1696 6.6312 2.3044 24 14 -5.1876 9.2213 2.3545 25 1 -4.9971 9.6590 0.9484 26 1 -6.5201 9.6667 2.8354 27 1 -4.1286 9.8192 3.2068 28 6 -1.5100 5.8747 4.1378 29 6 -0.1938 5.1058 4.2943 30 1 -0.3633 0.0782 1.0247 31 1 -0.3634 0.8484 -0.5799 32 1 -0.3633 -0.9265 -0.4446 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8445 1.6775 -1.2035 36 1 4.0059 0.5078 0.1454 37 1 5.0434 2.4502 1.1180 38 1 3.9204 3.5743 0.2821 39 1 2.3852 4.5226 2.0149 40 1 2.2393 3.6509 3.5600 41 1 3.8408 4.1603 2.9732 42 1 0.8427 5.7960 1.7230 43 1 0.0636 4.3918 0.9474 44 1 -2.1500 5.1578 1.6754 45 1 -1.3346 6.4983 0.8341 46 1 -2.7017 8.1776 3.7346 47 1 -2.5109 8.2391 1.9660 48 1 -7.0252 7.0620 2.1522 49 1 -2.3367 5.1686 4.0595 50 1 -1.6612 6.5173 5.0052 51 1 -0.2739 4.4087 5.1283 52 1 0.6222 5.8047 4.4783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329849979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:54 Heat of formation + Delta-G solvation = -32.108491 kcal Electronic energy + Delta-G solvation = -31972.565662 eV Core-core repulsion = 27973.241215 eV Total energy + Delta-G solvation = -3999.324447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32752 -39.48747 -37.89366 -37.49145 -34.70208 -34.06498 -32.32890 -31.97796 -30.85925 -30.40064 -28.81157 -26.22972 -26.04256 -24.77356 -23.24395 -22.92170 -22.15336 -21.56455 -20.89469 -19.57679 -18.55889 -17.49528 -17.12029 -16.95781 -16.78097 -15.96024 -15.15710 -14.90143 -14.62970 -14.52678 -14.38024 -14.28637 -14.12924 -13.84966 -13.69332 -13.61689 -13.15504 -12.90980 -12.77060 -12.56186 -12.50033 -12.34084 -12.07320 -11.94600 -11.81196 -11.37205 -11.32596 -11.21063 -11.08091 -11.03642 -11.01562 -10.73848 -10.67062 -10.63346 -10.45090 -10.32379 -10.08958 -9.56810 -9.22927 -8.81402 -8.64786 -8.63099 -7.36410 -6.13827 -4.15300 2.12447 2.17505 2.63483 3.24002 3.29816 3.32508 3.34793 4.00706 4.14163 4.35221 4.38902 4.45229 4.71231 4.73724 4.87703 4.93941 5.04192 5.15027 5.17223 5.19348 5.23739 5.32084 5.36391 5.42636 5.45352 5.47163 5.59364 5.60079 5.69605 5.73107 5.78348 5.82999 5.85628 5.93182 5.96050 6.00171 6.13937 6.25926 6.28245 6.51507 6.58991 6.61919 6.67183 6.83408 6.97428 7.14884 7.26033 7.47360 7.84210 7.89254 7.91341 7.92646 8.38791 8.88363 9.47583 10.98996 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.003206 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.569493 B = 8732.797759 C = 9272.854603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.136 3.864 4 H 0.081 0.919 5 C -0.129 4.129 6 C -0.127 4.127 7 C 0.125 3.875 8 H 0.081 0.919 9 C -0.183 4.183 10 N -0.599 5.599 11 C 0.522 3.478 12 O -0.489 6.489 13 C 0.526 3.474 14 O -0.529 6.529 15 N -0.589 5.589 16 C 0.110 3.890 17 C 0.048 3.952 18 N -0.533 5.533 19 C 0.156 3.844 20 C -0.556 4.556 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 C 0.046 3.954 29 C 0.116 3.884 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.030 0.970 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.712 -7.524 -4.273 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.033 3.967 4 H 0.099 0.901 5 C -0.167 4.167 6 C -0.165 4.165 7 C 0.022 3.978 8 H 0.099 0.901 9 C -0.241 4.241 10 N -0.337 5.337 11 C 0.306 3.694 12 O -0.363 6.363 13 C 0.309 3.691 14 O -0.406 6.406 15 N -0.323 5.323 16 C -0.012 4.012 17 C -0.081 4.081 18 N -0.257 5.257 19 C 0.030 3.970 20 C -0.595 4.595 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.083 4.083 29 C -0.006 4.006 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.100 0.900 51 H 0.108 0.892 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.356 -7.732 -3.978 24.922 hybrid contribution -1.121 0.416 -0.190 1.211 sum 22.234 -7.315 -4.168 23.775 Atomic orbital electron populations 1.22185 0.93780 1.00296 1.03882 1.21955 0.97959 0.95050 1.01939 1.21906 0.95360 0.94037 0.85381 0.90071 1.22721 0.93618 0.99533 1.00812 1.22843 0.98682 0.99499 0.95505 1.22050 0.83333 0.97416 0.94965 0.90072 1.22561 1.03652 0.96180 1.01673 1.48703 1.04976 1.59349 1.20635 1.19867 0.83126 0.81280 0.85115 1.90937 1.38660 1.47958 1.58753 1.19994 0.77074 0.82434 0.89553 1.90783 1.51645 1.67966 1.30228 1.48219 1.67697 1.06898 1.09482 1.22157 0.99818 0.95216 0.84053 1.22326 0.94672 0.96443 0.94640 1.62435 1.42288 1.19982 1.00957 1.20174 0.87131 0.92665 0.97032 1.21672 0.91578 0.95355 1.50871 0.90784 1.24983 0.95637 0.98227 0.94149 1.69931 0.99046 1.35707 1.48638 0.86783 0.77639 0.86025 0.78837 1.20185 1.21301 1.18866 1.22297 0.95049 0.96386 0.94570 1.21932 0.98352 0.94660 0.85620 0.90779 0.91718 0.94671 0.91197 0.91921 0.89741 0.90287 0.89621 0.90100 0.91160 0.90689 0.90696 0.90347 0.90600 0.92668 0.90151 0.95236 0.95469 0.92602 0.93177 0.90026 0.89162 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.07 37.16 0.30 -1.58 16 2 C -0.13 -1.29 5.43 -26.73 -0.15 -1.44 16 3 C 0.14 1.26 3.07 -66.79 -0.21 1.06 16 4 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 5 C -0.13 -0.77 6.47 -24.90 -0.16 -0.93 16 6 C -0.13 -0.75 6.50 -24.58 -0.16 -0.91 16 7 C 0.13 1.12 3.72 -66.42 -0.25 0.87 16 8 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 9 C -0.18 -1.71 7.66 37.16 0.28 -1.43 16 10 N -0.60 -6.86 2.99 -155.87 -0.47 -7.33 16 11 C 0.52 8.01 5.22 -11.59 -0.06 7.95 16 12 O -0.49 -8.75 11.76 5.50 0.06 -8.69 16 13 C 0.53 8.64 4.19 -11.59 -0.05 8.59 16 14 O -0.53 -9.89 15.89 5.50 0.09 -9.80 16 15 N -0.59 -9.03 2.13 -172.69 -0.37 -9.40 16 16 C 0.11 1.58 5.29 -3.36 -0.02 1.57 16 17 C 0.05 0.88 5.17 -3.46 -0.02 0.87 16 18 N -0.53 -10.32 4.83 -235.47 -1.14 -11.46 16 19 C 0.16 3.58 4.18 -4.98 -0.02 3.56 16 20 C -0.56 -15.21 8.30 -34.44 -0.29 -15.49 16 21 H 0.07 2.25 6.13 -52.48 -0.32 1.93 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 24 Si 0.88 21.01 27.37 -169.99 -4.65 16.36 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.26 -6.01 6.69 56.52 0.38 -5.63 16 28 C 0.05 0.85 5.24 -3.70 -0.02 0.83 16 29 C 0.12 1.76 6.58 -3.60 -0.02 1.73 16 30 H 0.07 1.18 5.82 -52.00 -0.30 0.88 16 31 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.06 -51.93 -0.42 0.05 16 39 H 0.07 0.68 5.70 -51.93 -0.30 0.38 16 40 H 0.07 0.91 4.84 -51.93 -0.25 0.66 16 41 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 43 H 0.08 1.06 6.36 -51.93 -0.33 0.73 16 44 H 0.06 1.22 6.79 -51.93 -0.35 0.87 16 45 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 46 H 0.03 0.68 7.48 -51.93 -0.39 0.30 16 47 H 0.03 0.62 7.29 -51.93 -0.38 0.24 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.05 1.09 6.92 -51.93 -0.36 0.73 16 50 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 51 H 0.09 1.39 7.09 -51.93 -0.37 1.02 16 52 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -32.71 382.34 -9.56 -42.27 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.70 Total: 1.55 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.93 Total: 7.23 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -1.20 Total: -54.68 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.15 Total: -18.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.65 Total: 16.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.71 -9.56 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329849979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.164 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds