Wall clock time and date at job start Tue Mar 31 2020 19:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 H 1.09002 * 110.00079 * 307.86229 * 3 2 1 5 5 C 1.54322 * 109.88227 * 186.76485 * 3 2 1 6 6 C 1.55156 * 103.10323 * 218.47913 * 5 3 2 7 7 C 1.54910 * 101.58252 * 35.41521 * 6 5 3 8 8 H 1.09001 * 110.36747 * 81.82743 * 7 6 5 9 9 C 1.53000 * 110.36867 * 204.15389 * 7 6 5 10 10 N 1.47325 * 110.06364 * 69.03529 * 3 2 1 11 11 C 1.34776 * 125.61591 * 298.24565 * 10 3 2 12 12 O 1.21350 * 120.00028 * 4.58664 * 11 10 3 13 13 C 1.49445 * 120.00043 * 184.59000 * 11 10 3 14 14 O 1.21352 * 120.00346 * 276.28877 * 13 11 10 15 15 N 1.34779 * 120.00184 * 96.29044 * 13 11 10 16 16 C 1.47086 * 120.87888 * 355.44904 * 15 13 11 17 17 C 1.53695 * 108.27783 * 128.75568 * 16 15 13 18 18 N 1.46900 * 109.25713 * 54.08046 * 17 16 15 19 19 C 1.46898 * 111.00087 * 172.60875 * 18 17 16 20 20 C 1.50696 * 109.47200 * 59.34762 * 19 18 17 21 21 H 1.08004 * 120.00365 * 5.10411 * 20 19 18 22 22 C 1.37884 * 120.00345 * 185.10517 * 20 19 18 23 23 N 1.31508 * 120.00313 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99610 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47453 * 90.00088 * 24 22 20 26 26 H 1.48501 * 109.47187 * 210.00230 * 24 22 20 27 27 H 1.48507 * 109.47421 * 329.99909 * 24 22 20 28 28 C 1.46899 * 111.26746 * 296.75920 * 18 17 16 29 29 C 1.47080 * 120.88311 * 175.72709 * 15 13 11 30 30 H 1.09005 * 109.46943 * 274.36112 * 1 2 3 31 31 H 1.09001 * 109.47575 * 34.35623 * 1 2 3 32 32 H 1.08997 * 109.47057 * 154.36311 * 1 2 3 33 33 H 1.09001 * 109.47078 * 240.00539 * 2 1 3 34 34 H 1.08998 * 109.47633 * 119.99692 * 2 1 3 35 35 H 1.09001 * 110.71917 * 100.02772 * 5 3 2 36 36 H 1.09000 * 110.72244 * 336.93638 * 5 3 2 37 37 H 1.09003 * 111.00505 * 153.49083 * 6 5 3 38 38 H 1.09001 * 111.00832 * 277.30337 * 6 5 3 39 39 H 1.08994 * 109.47013 * 66.67975 * 9 7 6 40 40 H 1.09001 * 109.47190 * 186.68587 * 9 7 6 41 41 H 1.09009 * 109.46593 * 306.68224 * 9 7 6 42 42 H 1.08995 * 109.62497 * 248.52502 * 16 15 13 43 43 H 1.09001 * 109.62756 * 9.09856 * 16 15 13 44 44 H 1.09000 * 109.64771 * 294.08107 * 17 16 15 45 45 H 1.08994 * 109.41988 * 173.94743 * 17 16 15 46 46 H 1.08998 * 109.47120 * 179.35089 * 19 18 17 47 47 H 1.09001 * 109.47144 * 299.34838 * 19 18 17 48 48 H 0.97001 * 120.00438 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.49447 * 303.13727 * 28 18 17 50 50 H 1.09004 * 109.48998 * 183.06450 * 28 18 17 51 51 H 1.08991 * 109.62860 * 350.89541 * 29 15 13 52 52 H 1.08996 * 109.62667 * 111.28342 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5715 2.0036 -0.8087 5 6 3.5736 1.4570 -0.1709 6 6 4.0217 2.6055 0.7712 7 6 3.0119 2.4630 1.9373 8 1 3.3353 1.6825 2.6260 9 6 2.8582 3.7950 2.6743 10 7 1.7416 2.0841 1.2922 11 6 0.5105 2.2883 1.8014 12 8 -0.4649 1.8579 1.2219 13 6 0.3467 3.0449 3.0798 14 8 0.4687 2.4731 4.1432 15 7 0.0634 4.3622 3.0517 16 6 0.0093 5.0957 1.7779 17 6 -1.3208 5.8638 1.7201 18 7 -1.4513 6.6976 2.9224 19 6 -2.6221 7.5797 2.8268 20 6 -3.8669 6.7462 2.6634 21 1 -3.8065 5.6691 2.7161 22 6 -5.0832 7.3585 2.4465 23 7 -6.1696 6.6312 2.3044 24 14 -5.1876 9.2213 2.3545 25 1 -4.9971 9.6590 0.9484 26 1 -6.5201 9.6667 2.8354 27 1 -4.1286 9.8192 3.2068 28 6 -1.5100 5.8747 4.1378 29 6 -0.1938 5.1058 4.2943 30 1 -0.3633 0.0782 1.0247 31 1 -0.3634 0.8484 -0.5799 32 1 -0.3633 -0.9265 -0.4446 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8445 1.6775 -1.2035 36 1 4.0059 0.5078 0.1454 37 1 5.0434 2.4502 1.1180 38 1 3.9204 3.5743 0.2821 39 1 2.3852 4.5226 2.0149 40 1 2.2393 3.6509 3.5600 41 1 3.8408 4.1603 2.9732 42 1 0.8427 5.7960 1.7230 43 1 0.0636 4.3918 0.9474 44 1 -2.1500 5.1578 1.6754 45 1 -1.3346 6.4983 0.8341 46 1 -2.7017 8.1776 3.7346 47 1 -2.5109 8.2391 1.9660 48 1 -7.0252 7.0620 2.1522 49 1 -2.3367 5.1686 4.0595 50 1 -1.6612 6.5173 5.0052 51 1 -0.2739 4.4087 5.1283 52 1 0.6222 5.8047 4.4783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329849979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:53 Heat of formation + Delta-G solvation = -55.529990 kcal Electronic energy + Delta-G solvation = -31973.581294 eV Core-core repulsion = 27973.241215 eV Total energy + Delta-G solvation = -4000.340079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44375 -40.63486 -39.19310 -38.72398 -36.23057 -34.97703 -34.36580 -32.80715 -32.22678 -31.21587 -30.53559 -27.80286 -26.83547 -26.12256 -24.65680 -24.00285 -23.44056 -22.51367 -21.98545 -20.90450 -19.79399 -18.96387 -18.46746 -18.22046 -17.91872 -17.12869 -16.60079 -16.38427 -16.13866 -15.91350 -15.77783 -15.41235 -15.14052 -15.10003 -14.75237 -14.49237 -14.43605 -14.13070 -13.87475 -13.84079 -13.71412 -13.53786 -13.17124 -13.11989 -12.96063 -12.77100 -12.70938 -12.48879 -12.33534 -12.21591 -12.09003 -12.00168 -11.85570 -11.80318 -11.67511 -11.60596 -11.56030 -11.47076 -10.81535 -10.46681 -9.98365 -9.77234 -9.13020 -8.33614 -6.41082 0.92498 1.01930 1.35995 1.37941 1.41082 1.50139 2.20570 2.32739 3.01440 3.01723 3.15974 3.53033 3.66677 3.78709 3.85612 3.96197 4.00336 4.12128 4.17697 4.21695 4.27808 4.35627 4.38231 4.44971 4.49312 4.60049 4.62637 4.69534 4.74654 4.77388 4.92049 4.92304 4.93931 5.00662 5.03417 5.04060 5.08465 5.10782 5.14868 5.19612 5.22038 5.26970 5.37623 5.40945 5.44752 5.53366 5.90144 6.06502 6.16404 6.23755 6.25954 6.62369 6.66586 6.73372 7.26315 8.83444 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.003206 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.569493 B = 8732.797759 C = 9272.854603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.125 3.875 4 H 0.077 0.923 5 C -0.118 4.118 6 C -0.115 4.115 7 C 0.114 3.886 8 H 0.080 0.920 9 C -0.180 4.180 10 N -0.590 5.590 11 C 0.517 3.483 12 O -0.529 6.529 13 C 0.525 3.475 14 O -0.559 6.559 15 N -0.589 5.589 16 C 0.125 3.875 17 C 0.049 3.951 18 N -0.515 5.515 19 C 0.162 3.838 20 C -0.555 4.555 21 H 0.021 0.979 22 C 0.006 3.994 23 N -0.952 5.952 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.288 1.288 27 H -0.238 1.238 28 C 0.049 3.951 29 C 0.126 3.874 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.001 0.999 45 H 0.092 0.908 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.266 0.734 49 H -0.001 1.001 50 H 0.094 0.906 51 H 0.085 0.915 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.194 -5.438 -5.323 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.024 3.976 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.152 4.152 7 C 0.012 3.988 8 H 0.098 0.902 9 C -0.237 4.237 10 N -0.325 5.325 11 C 0.300 3.700 12 O -0.406 6.406 13 C 0.310 3.690 14 O -0.438 6.438 15 N -0.322 5.322 16 C 0.002 3.998 17 C -0.080 4.080 18 N -0.238 5.238 19 C 0.034 3.966 20 C -0.594 4.594 21 H 0.039 0.961 22 C -0.192 4.192 23 N -0.592 5.592 24 Si 0.781 3.219 25 H -0.189 1.189 26 H -0.214 1.214 27 H -0.161 1.161 28 C -0.081 4.081 29 C 0.004 3.996 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.020 0.980 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.018 0.982 50 H 0.112 0.888 51 H 0.104 0.896 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 27.919 -5.645 -5.037 28.926 hybrid contribution -2.535 -0.377 0.152 2.568 sum 25.384 -6.023 -4.884 26.542 Atomic orbital electron populations 1.22059 0.96547 0.99830 1.01248 1.21940 0.95266 0.96006 1.03150 1.22196 0.98268 0.93178 0.83993 0.90482 1.22737 0.90122 1.00332 1.02330 1.22854 0.98788 0.99850 0.93753 1.22374 0.82756 0.97268 0.96369 0.90164 1.22514 1.04537 0.96322 1.00331 1.48827 1.04533 1.57883 1.21247 1.19716 0.84163 0.81408 0.84702 1.90944 1.40262 1.49738 1.59677 1.20289 0.76454 0.82524 0.89771 1.90749 1.53111 1.68549 1.31408 1.48291 1.67155 1.06859 1.09907 1.22131 0.98486 0.95344 0.83791 1.22345 0.95232 0.95675 0.94745 1.62492 1.39847 1.19889 1.01595 1.20084 0.86063 0.92711 0.97707 1.21913 0.93961 0.93523 1.49980 0.96079 1.26063 0.94933 1.04467 0.93693 1.70118 0.99937 1.38436 1.50722 0.85552 0.78175 0.78426 0.79777 1.18908 1.21445 1.16081 1.22317 0.95376 0.95693 0.94672 1.21878 0.97432 0.94740 0.85505 0.94343 0.93506 0.93886 0.88261 0.92238 0.87400 0.89110 0.86951 0.89320 0.91300 0.93652 0.88018 0.86393 0.90239 0.98013 0.89017 0.94381 0.94164 0.92538 0.98241 0.88761 0.89618 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.07 71.98 0.58 -3.23 16 2 C -0.13 -2.34 5.43 30.60 0.17 -2.18 16 3 C 0.13 2.10 3.07 45.28 0.14 2.24 16 4 H 0.08 1.39 7.96 -2.39 -0.02 1.37 16 5 C -0.12 -0.90 6.47 31.78 0.21 -0.70 16 6 C -0.11 -0.83 6.50 31.99 0.21 -0.62 16 7 C 0.11 1.75 3.72 45.47 0.17 1.92 16 8 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 9 C -0.18 -2.88 7.66 71.98 0.55 -2.33 16 10 N -0.59 -13.03 2.99 -765.43 -2.29 -15.32 16 11 C 0.52 16.45 5.22 87.27 0.46 16.90 16 12 O -0.53 -20.40 11.76 -3.25 -0.04 -20.44 16 13 C 0.53 17.84 4.19 87.27 0.37 18.21 16 14 O -0.56 -21.77 15.89 -3.25 -0.05 -21.82 16 15 N -0.59 -18.19 2.13 -818.63 -1.74 -19.93 16 16 C 0.12 3.48 5.29 86.50 0.46 3.94 16 17 C 0.05 1.84 5.17 86.54 0.45 2.29 16 18 N -0.52 -19.81 4.83 -898.90 -4.34 -24.15 16 19 C 0.16 7.32 4.18 85.56 0.36 7.68 16 20 C -0.56 -31.72 8.30 25.60 0.21 -31.50 16 21 H 0.02 1.40 6.13 -2.91 -0.02 1.38 16 22 C 0.01 0.36 5.47 84.66 0.46 0.82 16 23 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 24 Si 0.96 43.24 27.37 68.60 1.88 45.12 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.24 -9.66 6.69 99.48 0.67 -9.00 16 28 C 0.05 1.83 5.24 86.38 0.45 2.28 16 29 C 0.13 3.77 6.58 86.35 0.57 4.34 16 30 H 0.04 1.33 5.82 -3.59 -0.02 1.31 16 31 H 0.05 1.41 6.73 -2.39 -0.02 1.40 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.55 7.85 -2.39 -0.02 0.53 16 37 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.57 8.06 -2.39 -0.02 0.55 16 39 H 0.07 1.11 5.70 -2.39 -0.01 1.09 16 40 H 0.04 1.03 4.84 -2.39 -0.01 1.02 16 41 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.12 2.46 7.33 -2.39 -0.02 2.44 16 43 H 0.08 2.21 6.36 -2.39 -0.02 2.19 16 44 H 0.00 0.07 6.79 -2.39 -0.02 0.05 16 45 H 0.09 3.18 8.11 -2.39 -0.02 3.16 16 46 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 47 H 0.04 1.74 7.29 -2.39 -0.02 1.73 16 48 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 49 H 0.00 -0.04 6.92 -2.39 -0.02 -0.06 16 50 H 0.09 3.26 8.05 -2.39 -0.02 3.25 16 51 H 0.09 2.68 7.09 -2.39 -0.02 2.67 16 52 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -79.47 382.34 0.38 -79.09 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.86 Total: 17.85 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 5.80 Total: 20.06 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -8.07 Total: -119.86 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.09 Total: -42.26 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -79.47 0.38 -79.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329849979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.563 kcal (2) G-P(sol) polarization free energy of solvation -79.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds