Wall clock time and date at job start Tue Mar 31 2020 19:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50701 * 120.00135 * 2 1 4 4 C 1.32994 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00232 * 7.37551 * 4 2 1 6 6 O 1.21613 * 119.99736 * 3.13920 * 5 4 2 7 7 N 1.34772 * 119.99844 * 183.14645 * 5 4 2 8 8 C 1.46505 * 119.99863 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47269 * 175.14495 * 8 7 5 10 10 H 1.09006 * 109.01083 * 185.75731 * 9 8 7 11 11 C 1.54427 * 109.02368 * 66.84531 * 9 8 7 12 12 C 1.50808 * 109.00866 * 161.94844 * 11 9 8 13 13 C 1.54174 * 112.54420 * 93.10411 * 12 11 9 14 14 C 1.53819 * 111.97213 * 318.48547 * 13 12 11 15 15 C 1.50814 * 111.61932 * 319.04714 * 14 13 12 16 16 N 1.39776 * 109.02213 * 304.66262 * 9 8 7 17 17 C 1.46896 * 111.00319 * 309.72118 * 16 9 8 18 18 C 1.50693 * 109.47410 * 290.83932 * 17 16 9 19 19 O 1.21290 * 119.99916 * 1.00799 * 18 17 16 20 20 N 1.34784 * 120.00495 * 181.00162 * 18 17 16 21 21 C 1.37090 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99432 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00083 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00386 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46805 * 90.00137 * 25 23 21 27 27 H 1.48497 * 109.47164 * 209.99998 * 25 23 21 28 28 H 1.48500 * 109.47049 * 330.00166 * 25 23 21 29 29 H 1.08999 * 109.47295 * 95.60098 * 1 2 3 30 30 H 1.09000 * 109.47789 * 215.60169 * 1 2 3 31 31 H 1.08998 * 109.47326 * 335.60654 * 1 2 3 32 32 H 1.09002 * 109.47006 * 359.97438 * 3 2 1 33 33 H 1.08989 * 109.47834 * 119.99741 * 3 2 1 34 34 H 1.09003 * 109.46756 * 239.99701 * 3 2 1 35 35 H 1.08004 * 119.99799 * 187.36957 * 4 2 1 36 36 H 0.96998 * 120.00801 * 359.97438 * 7 5 4 37 37 H 1.08999 * 109.46914 * 295.15064 * 8 7 5 38 38 H 1.09009 * 109.46657 * 55.14578 * 8 7 5 39 39 H 1.09003 * 109.54464 * 281.88609 * 11 9 8 40 40 H 1.09001 * 109.54855 * 42.14978 * 11 9 8 41 41 H 1.09002 * 108.88937 * 332.31746 * 12 11 9 42 42 H 1.09000 * 108.88823 * 213.89341 * 12 11 9 43 43 H 1.08999 * 108.98022 * 197.83800 * 13 12 11 44 44 H 1.09008 * 108.98006 * 79.12786 * 13 12 11 45 45 H 1.08997 * 109.05217 * 198.49269 * 14 13 12 46 46 H 1.08999 * 108.99103 * 79.55363 * 14 13 12 47 47 H 1.09007 * 109.74728 * 335.42339 * 15 14 13 48 48 H 1.09004 * 109.78886 * 214.72582 * 15 14 13 49 49 H 1.09001 * 109.47119 * 50.84349 * 17 16 9 50 50 H 1.09000 * 109.47457 * 170.83652 * 17 16 9 51 51 H 0.97004 * 119.99263 * 0.02562 * 20 18 17 52 52 H 0.96997 * 120.00385 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4455 -2.4205 -0.1624 6 8 0.2447 -2.4133 -0.3548 7 7 2.1108 -3.5909 -0.0985 8 6 1.3872 -4.8545 -0.2602 9 6 2.3836 -6.0155 -0.2667 10 1 1.8504 -6.9398 -0.4894 11 6 3.0302 -6.1316 1.1309 12 6 3.6529 -7.4979 1.2720 13 6 5.1426 -7.5124 0.8749 14 6 5.4098 -6.6757 -0.3878 15 6 4.3307 -6.8720 -1.4230 16 7 3.3395 -5.7900 -1.2613 17 6 2.6992 -5.4668 -2.5432 18 6 2.0029 -6.6908 -3.0798 19 8 2.0212 -7.7253 -2.4468 20 7 1.3596 -6.6360 -4.2629 21 6 0.7258 -7.7494 -4.7507 22 1 0.7415 -8.6703 -4.1868 23 6 0.0632 -7.6930 -5.9707 24 7 -0.5449 -8.7601 -6.4382 25 14 0.0354 -6.0999 -6.9458 26 1 1.2043 -6.0592 -7.8608 27 1 -1.2174 -6.0273 -7.7398 28 1 0.0972 -4.9469 -6.0121 29 1 -0.3634 -0.1003 -1.0227 30 1 -0.3635 -0.8355 0.5982 31 1 -0.3634 0.9359 0.4244 32 1 1.5522 2.1336 -0.0005 33 1 2.8871 1.3630 0.8899 34 1 2.8872 1.3627 -0.8900 35 1 3.2453 -1.1556 0.1205 36 1 3.0686 -3.5967 0.0546 37 1 0.6874 -4.9807 0.5658 38 1 0.8388 -4.8411 -1.2022 39 1 3.7982 -5.3662 1.2422 40 1 2.2673 -5.9986 1.8980 41 1 3.1122 -8.1995 0.6368 42 1 3.5615 -7.8220 2.3087 43 1 5.4502 -8.5416 0.6900 44 1 5.7329 -7.1101 1.6983 45 1 6.3690 -6.9702 -0.8134 46 1 5.4513 -5.6218 -0.1128 47 1 3.8488 -7.8383 -1.2740 48 1 4.7651 -6.8274 -2.4218 49 1 1.9704 -4.6700 -2.3946 50 1 3.4565 -5.1383 -3.2550 51 1 1.3453 -5.8087 -4.7692 52 1 -1.0078 -8.7206 -7.2896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329900491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:01 Heat of formation + Delta-G solvation = -47.054426 kcal Electronic energy + Delta-G solvation = -31056.674311 eV Core-core repulsion = 27056.701760 eV Total energy + Delta-G solvation = -3999.972551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55386 -39.38934 -37.75410 -35.82794 -34.88135 -34.26107 -33.48286 -31.98821 -31.71654 -28.80047 -28.27784 -27.87245 -26.58549 -25.41743 -23.82776 -23.03898 -21.38155 -20.05835 -19.39224 -19.31334 -18.86864 -18.10085 -16.98545 -16.27975 -15.93256 -15.72246 -15.36081 -14.89172 -14.85147 -14.62333 -14.44870 -14.05211 -13.89993 -13.83892 -13.76262 -13.48733 -13.05880 -12.79691 -12.62195 -12.52848 -12.49357 -12.24755 -12.23394 -11.91642 -11.78443 -11.67797 -11.57410 -11.43919 -11.15557 -10.74372 -10.61048 -10.49820 -10.45000 -10.19104 -10.07586 -10.02428 -9.57244 -9.47288 -9.27812 -9.19593 -8.72914 -8.20971 -7.55993 -6.35100 -3.86109 1.30803 3.02770 3.06263 3.14571 3.35817 3.41892 3.67644 4.08025 4.16096 4.62604 4.65728 4.70036 4.83072 4.92144 4.96815 5.09322 5.17533 5.21458 5.23896 5.24902 5.32625 5.46284 5.51564 5.56881 5.59581 5.71728 5.75853 5.76983 5.77923 5.86094 5.90284 5.94769 5.96471 6.01094 6.06744 6.15440 6.23970 6.27796 6.30392 6.36199 6.38015 6.46217 6.53515 6.66796 6.72340 7.28021 7.52856 7.65061 7.74704 8.10773 8.42093 8.54094 8.90606 9.38829 9.76691 10.77758 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007600 B = 0.004261 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.532388 B = 6569.313684 C = 9398.967786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 C -0.127 4.127 4 C -0.233 4.233 5 C 0.538 3.462 6 O -0.547 6.547 7 N -0.710 5.710 8 C 0.120 3.880 9 C 0.076 3.924 10 H 0.079 0.921 11 C -0.105 4.105 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.115 4.115 15 C 0.065 3.935 16 N -0.522 5.522 17 C 0.034 3.966 18 C 0.416 3.584 19 O -0.578 6.578 20 N -0.584 5.584 21 C -0.306 4.306 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.879 5.879 25 Si 0.878 3.122 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.268 1.268 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.371 0.629 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 16.101 14.443 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.183 4.183 4 C -0.254 4.254 5 C 0.328 3.672 6 O -0.427 6.427 7 N -0.361 5.361 8 C -0.004 4.004 9 C -0.034 4.034 10 H 0.097 0.903 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.061 4.061 16 N -0.245 5.245 17 C -0.097 4.097 18 C 0.202 3.798 19 O -0.462 6.462 20 N -0.222 5.222 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.519 5.519 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.048 15.629 14.724 23.707 hybrid contribution -0.054 0.391 -1.268 1.328 sum 9.994 16.020 13.456 23.186 Atomic orbital electron populations 1.21203 0.90922 1.02329 1.03710 1.22540 0.96898 0.94388 0.90104 1.21002 1.00242 0.94327 1.02744 1.22351 1.00152 0.92220 1.10633 1.18566 0.87108 0.84367 0.77192 1.90763 1.14705 1.87647 1.49626 1.45802 1.12255 1.05162 1.72886 1.21666 0.94312 0.82339 1.02088 1.20966 0.92501 0.97941 0.92013 0.90320 1.21461 0.99796 0.97624 0.95432 1.21416 0.96006 0.97799 1.00854 1.21888 0.95975 0.99949 0.97382 1.21429 0.97980 1.00658 0.95288 1.21790 0.91941 0.94361 0.98042 1.59361 1.17535 1.43039 1.04569 1.22275 0.98979 0.96853 0.91600 1.20982 0.84712 0.90922 0.83181 1.90496 1.64571 1.32395 1.58774 1.42381 1.48225 1.12469 1.19134 1.19434 1.28635 0.91619 1.03845 0.86345 1.25060 0.96697 0.97372 0.96897 1.69622 1.33775 1.28125 1.20333 0.86691 0.78911 0.83152 0.80837 1.19567 1.20079 1.19362 0.90399 0.88958 0.92979 0.91343 0.90809 0.90602 0.85850 0.75924 0.91603 0.91003 0.91347 0.91769 0.91441 0.92768 0.92618 0.92854 0.92493 0.91229 0.91070 0.91701 0.88743 0.89408 0.79662 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.45 36.00 0.30 -1.05 16 2 C -0.04 -0.36 6.11 -101.17 -0.62 -0.98 16 3 C -0.13 -0.82 10.06 36.01 0.36 -0.46 16 4 C -0.23 -2.39 9.67 -37.81 -0.37 -2.75 16 5 C 0.54 7.17 7.65 -12.67 -0.10 7.08 16 6 O -0.55 -9.18 13.21 5.27 0.07 -9.11 16 7 N -0.71 -8.51 4.91 -61.49 -0.30 -8.82 16 8 C 0.12 1.71 4.44 -4.04 -0.02 1.69 16 9 C 0.08 1.08 1.41 -70.64 -0.10 0.98 16 10 H 0.08 1.44 5.48 -51.93 -0.28 1.16 16 11 C -0.11 -1.20 4.68 -27.08 -0.13 -1.33 16 12 C -0.12 -1.45 5.32 -27.22 -0.14 -1.59 16 13 C -0.11 -1.23 5.91 -25.69 -0.15 -1.38 16 14 C -0.12 -1.31 5.41 -27.40 -0.15 -1.45 16 15 C 0.07 0.95 4.21 -4.52 -0.02 0.93 16 16 N -0.52 -7.32 3.43 -233.12 -0.80 -8.12 16 17 C 0.03 0.55 5.16 -4.98 -0.03 0.53 16 18 C 0.42 9.01 7.22 -10.99 -0.08 8.93 16 19 O -0.58 -14.22 11.86 5.55 0.07 -14.15 16 20 N -0.58 -13.80 5.09 -10.97 -0.06 -13.86 16 21 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 24 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 25 Si 0.88 19.67 27.74 -169.99 -4.71 14.96 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.59 6.52 56.52 0.37 -5.23 16 29 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 30 H 0.09 1.20 6.06 -51.93 -0.31 0.88 16 31 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 32 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.41 4.11 7.61 -40.82 -0.31 3.80 16 37 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 38 H 0.07 1.22 6.21 -51.92 -0.32 0.90 16 39 H 0.07 0.71 6.66 -51.93 -0.35 0.36 16 40 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 41 H 0.07 0.97 6.58 -51.93 -0.34 0.63 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 47 H 0.07 1.26 5.20 -51.93 -0.27 0.99 16 48 H 0.06 0.99 7.77 -51.93 -0.40 0.58 16 49 H 0.09 1.50 5.34 -51.93 -0.28 1.23 16 50 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 51 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 52 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -31.82 392.65 -9.00 -40.82 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -8.48 Total: 15.86 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.47 Total: 1.47 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.38 Total: -55.76 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.14 Total: -23.26 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.82 -9.00 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329900491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.234 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds