Wall clock time and date at job start Tue Mar 31 2020 19:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50701 * 120.00135 * 2 1 4 4 C 1.32994 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00232 * 7.37551 * 4 2 1 6 6 O 1.21613 * 119.99736 * 3.13920 * 5 4 2 7 7 N 1.34772 * 119.99844 * 183.14645 * 5 4 2 8 8 C 1.46505 * 119.99863 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47269 * 175.14495 * 8 7 5 10 10 H 1.09006 * 109.01083 * 185.75731 * 9 8 7 11 11 C 1.54427 * 109.02368 * 66.84531 * 9 8 7 12 12 C 1.50808 * 109.00866 * 161.94844 * 11 9 8 13 13 C 1.54174 * 112.54420 * 93.10411 * 12 11 9 14 14 C 1.53819 * 111.97213 * 318.48547 * 13 12 11 15 15 C 1.50814 * 111.61932 * 319.04714 * 14 13 12 16 16 N 1.39776 * 109.02213 * 304.66262 * 9 8 7 17 17 C 1.46896 * 111.00319 * 309.72118 * 16 9 8 18 18 C 1.50693 * 109.47410 * 290.83932 * 17 16 9 19 19 O 1.21290 * 119.99916 * 1.00799 * 18 17 16 20 20 N 1.34784 * 120.00495 * 181.00162 * 18 17 16 21 21 C 1.37090 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00188 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99432 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00083 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00386 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46805 * 90.00137 * 25 23 21 27 27 H 1.48497 * 109.47164 * 209.99998 * 25 23 21 28 28 H 1.48500 * 109.47049 * 330.00166 * 25 23 21 29 29 H 1.08999 * 109.47295 * 95.60098 * 1 2 3 30 30 H 1.09000 * 109.47789 * 215.60169 * 1 2 3 31 31 H 1.08998 * 109.47326 * 335.60654 * 1 2 3 32 32 H 1.09002 * 109.47006 * 359.97438 * 3 2 1 33 33 H 1.08989 * 109.47834 * 119.99741 * 3 2 1 34 34 H 1.09003 * 109.46756 * 239.99701 * 3 2 1 35 35 H 1.08004 * 119.99799 * 187.36957 * 4 2 1 36 36 H 0.96998 * 120.00801 * 359.97438 * 7 5 4 37 37 H 1.08999 * 109.46914 * 295.15064 * 8 7 5 38 38 H 1.09009 * 109.46657 * 55.14578 * 8 7 5 39 39 H 1.09003 * 109.54464 * 281.88609 * 11 9 8 40 40 H 1.09001 * 109.54855 * 42.14978 * 11 9 8 41 41 H 1.09002 * 108.88937 * 332.31746 * 12 11 9 42 42 H 1.09000 * 108.88823 * 213.89341 * 12 11 9 43 43 H 1.08999 * 108.98022 * 197.83800 * 13 12 11 44 44 H 1.09008 * 108.98006 * 79.12786 * 13 12 11 45 45 H 1.08997 * 109.05217 * 198.49269 * 14 13 12 46 46 H 1.08999 * 108.99103 * 79.55363 * 14 13 12 47 47 H 1.09007 * 109.74728 * 335.42339 * 15 14 13 48 48 H 1.09004 * 109.78886 * 214.72582 * 15 14 13 49 49 H 1.09001 * 109.47119 * 50.84349 * 17 16 9 50 50 H 1.09000 * 109.47457 * 170.83652 * 17 16 9 51 51 H 0.97004 * 119.99263 * 0.02562 * 20 18 17 52 52 H 0.96997 * 120.00385 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4455 -2.4205 -0.1624 6 8 0.2447 -2.4133 -0.3548 7 7 2.1108 -3.5909 -0.0985 8 6 1.3872 -4.8545 -0.2602 9 6 2.3836 -6.0155 -0.2667 10 1 1.8504 -6.9398 -0.4894 11 6 3.0302 -6.1316 1.1309 12 6 3.6529 -7.4979 1.2720 13 6 5.1426 -7.5124 0.8749 14 6 5.4098 -6.6757 -0.3878 15 6 4.3307 -6.8720 -1.4230 16 7 3.3395 -5.7900 -1.2613 17 6 2.6992 -5.4668 -2.5432 18 6 2.0029 -6.6908 -3.0798 19 8 2.0212 -7.7253 -2.4468 20 7 1.3596 -6.6360 -4.2629 21 6 0.7258 -7.7494 -4.7507 22 1 0.7415 -8.6703 -4.1868 23 6 0.0632 -7.6930 -5.9707 24 7 -0.5449 -8.7601 -6.4382 25 14 0.0354 -6.0999 -6.9458 26 1 1.2043 -6.0592 -7.8608 27 1 -1.2174 -6.0273 -7.7398 28 1 0.0972 -4.9469 -6.0121 29 1 -0.3634 -0.1003 -1.0227 30 1 -0.3635 -0.8355 0.5982 31 1 -0.3634 0.9359 0.4244 32 1 1.5522 2.1336 -0.0005 33 1 2.8871 1.3630 0.8899 34 1 2.8872 1.3627 -0.8900 35 1 3.2453 -1.1556 0.1205 36 1 3.0686 -3.5967 0.0546 37 1 0.6874 -4.9807 0.5658 38 1 0.8388 -4.8411 -1.2022 39 1 3.7982 -5.3662 1.2422 40 1 2.2673 -5.9986 1.8980 41 1 3.1122 -8.1995 0.6368 42 1 3.5615 -7.8220 2.3087 43 1 5.4502 -8.5416 0.6900 44 1 5.7329 -7.1101 1.6983 45 1 6.3690 -6.9702 -0.8134 46 1 5.4513 -5.6218 -0.1128 47 1 3.8488 -7.8383 -1.2740 48 1 4.7651 -6.8274 -2.4218 49 1 1.9704 -4.6700 -2.3946 50 1 3.4565 -5.1383 -3.2550 51 1 1.3453 -5.8087 -4.7692 52 1 -1.0078 -8.7206 -7.2896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329900491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:00 Heat of formation + Delta-G solvation = -70.003871 kcal Electronic energy + Delta-G solvation = -31057.669474 eV Core-core repulsion = 27056.701760 eV Total energy + Delta-G solvation = -4000.967714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84975 -40.54319 -39.36172 -36.68134 -36.16429 -35.80926 -34.85602 -33.80399 -33.04552 -29.91842 -29.43482 -28.56809 -27.57786 -26.97840 -25.34497 -24.15456 -22.40793 -21.54863 -21.08663 -20.36972 -20.09609 -19.56819 -17.99891 -17.72965 -17.36303 -17.00590 -16.68463 -16.36277 -15.94262 -15.70740 -15.52862 -15.40791 -15.25073 -15.06274 -14.75191 -14.63241 -14.53483 -14.18901 -14.02523 -13.62585 -13.50379 -13.30875 -13.18542 -13.09807 -13.00650 -12.73719 -12.62053 -12.56143 -12.47258 -12.31785 -12.06249 -11.86200 -11.61050 -11.54805 -11.43025 -11.19800 -11.06921 -10.93408 -10.52527 -10.27193 -10.17134 -9.69705 -9.05218 -8.47123 -6.06830 0.50418 1.25436 1.28568 1.37856 1.87673 2.16797 2.36975 2.43774 2.89287 2.95936 3.10119 3.65482 3.79310 3.94078 3.98556 4.01403 4.17831 4.18532 4.25555 4.37220 4.39051 4.42001 4.51904 4.53845 4.65162 4.70369 4.75038 4.76794 4.80281 4.87475 4.91254 4.96292 5.02006 5.06936 5.12759 5.14964 5.23917 5.26193 5.34769 5.38241 5.47791 5.51597 5.56551 5.63174 5.64121 5.73984 5.88764 6.02455 6.37358 6.52874 6.79755 6.83009 7.34038 7.44224 7.89130 8.70514 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007600 B = 0.004261 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.532388 B = 6569.313684 C = 9398.967786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 C -0.123 4.123 4 C -0.241 4.241 5 C 0.531 3.469 6 O -0.590 6.590 7 N -0.694 5.694 8 C 0.131 3.869 9 C 0.082 3.918 10 H 0.030 0.970 11 C -0.094 4.094 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.107 4.107 15 C 0.065 3.935 16 N -0.496 5.496 17 C 0.044 3.956 18 C 0.419 3.581 19 O -0.610 6.610 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.960 3.040 26 H -0.252 1.252 27 H -0.274 1.274 28 H -0.240 1.240 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.419 0.581 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.030 0.970 48 H 0.059 0.941 49 H 0.105 0.895 50 H 0.120 0.880 51 H 0.386 0.614 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 20.738 15.409 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.035 4.035 3 C -0.179 4.179 4 C -0.261 4.261 5 C 0.323 3.677 6 O -0.474 6.474 7 N -0.347 5.347 8 C 0.005 3.995 9 C -0.029 4.029 10 H 0.048 0.952 11 C -0.132 4.132 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.061 4.061 16 N -0.219 5.219 17 C -0.087 4.087 18 C 0.206 3.794 19 O -0.496 6.496 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.211 4.211 24 N -0.573 5.573 25 Si 0.780 3.220 26 H -0.176 1.176 27 H -0.199 1.199 28 H -0.164 1.164 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.257 0.743 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.049 0.951 48 H 0.078 0.922 49 H 0.123 0.877 50 H 0.138 0.862 51 H 0.221 0.779 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.156 20.271 15.728 28.834 hybrid contribution -1.048 -1.177 -1.430 2.128 sum 12.108 19.094 14.298 26.751 Atomic orbital electron populations 1.21148 0.92451 1.02373 1.02357 1.22841 0.96180 0.95939 0.88492 1.21051 1.00407 0.92373 1.04050 1.22421 1.01468 0.90427 1.11805 1.19205 0.86774 0.85505 0.76262 1.90761 1.16753 1.88250 1.51590 1.45609 1.12649 1.03948 1.72448 1.21356 0.94204 0.83579 1.00321 1.20858 0.92389 0.95700 0.93923 0.95231 1.21408 1.00440 0.98157 0.93202 1.21402 0.96588 0.97050 1.00964 1.21887 0.95182 0.99812 0.98079 1.21366 0.96895 1.01958 0.94300 1.21800 0.92629 0.92451 0.99257 1.59569 1.16636 1.42288 1.03365 1.22381 0.99522 0.93873 0.92942 1.22259 0.82962 0.92224 0.81917 1.90515 1.65022 1.34598 1.59417 1.42265 1.48987 1.11815 1.20173 1.18999 1.30822 0.91359 1.04372 0.92560 1.26064 0.95400 1.02066 0.97609 1.69795 1.35018 1.31256 1.21248 0.85434 0.79422 0.77947 0.79194 1.17631 1.19901 1.16406 0.92021 0.91612 0.90766 0.90537 0.88994 0.89479 0.82596 0.74340 0.92062 0.94150 0.88692 0.91008 0.95418 0.91149 0.93365 0.90025 0.91046 0.89229 0.95126 0.92239 0.87741 0.86248 0.77877 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.45 71.24 0.60 -2.01 16 2 C -0.03 -0.53 6.11 -17.62 -0.11 -0.64 16 3 C -0.12 -1.07 10.06 71.24 0.72 -0.35 16 4 C -0.24 -4.18 9.67 23.43 0.23 -3.96 16 5 C 0.53 13.37 7.65 86.57 0.66 14.03 16 6 O -0.59 -19.96 13.21 -4.07 -0.05 -20.01 16 7 N -0.69 -15.33 4.91 -466.71 -2.29 -17.62 16 8 C 0.13 3.74 4.44 86.38 0.38 4.12 16 9 C 0.08 2.35 1.41 46.68 0.07 2.42 16 10 H 0.03 1.18 5.48 -2.38 -0.01 1.17 16 11 C -0.09 -2.01 4.68 30.37 0.14 -1.86 16 12 C -0.12 -2.80 5.32 30.28 0.16 -2.64 16 13 C -0.11 -2.16 5.91 31.27 0.18 -1.98 16 14 C -0.11 -2.13 5.41 30.16 0.16 -1.96 16 15 C 0.07 1.88 4.21 85.45 0.36 2.24 16 16 N -0.50 -13.42 3.43 -891.46 -3.06 -16.48 16 17 C 0.04 1.38 5.16 85.56 0.44 1.83 16 18 C 0.42 18.82 7.22 87.65 0.63 19.46 16 19 O -0.61 -32.30 11.86 -3.06 -0.04 -32.34 16 20 N -0.59 -28.71 5.09 -306.99 -1.56 -30.27 16 21 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.93 -57.29 13.96 21.66 0.30 -56.98 16 25 Si 0.96 40.55 27.74 68.60 1.90 42.45 16 26 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.24 -8.97 6.52 99.48 0.65 -8.32 16 29 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 30 H 0.07 1.72 6.06 -2.39 -0.01 1.71 16 31 H 0.07 1.13 7.94 -2.39 -0.02 1.11 16 32 H 0.08 0.57 7.87 -2.39 -0.02 0.55 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.42 6.96 7.61 -92.71 -0.71 6.26 16 37 H 0.06 1.81 8.00 -2.39 -0.02 1.79 16 38 H 0.04 1.42 6.21 -2.38 -0.01 1.41 16 39 H 0.09 1.57 6.66 -2.39 -0.02 1.55 16 40 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 41 H 0.03 0.85 6.58 -2.39 -0.02 0.83 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.47 7.25 -2.39 -0.02 1.45 16 47 H 0.03 1.15 5.20 -2.38 -0.01 1.13 16 48 H 0.06 1.76 7.77 -2.38 -0.02 1.74 16 49 H 0.10 3.20 5.34 -2.39 -0.01 3.18 16 50 H 0.12 3.10 8.07 -2.39 -0.02 3.08 16 51 H 0.39 16.10 5.76 -92.71 -0.53 15.56 16 52 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -78.75 392.65 0.80 -77.95 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.36 Total: 43.46 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.95 Total: 9.85 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.61 Total: -121.36 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.09 Total: -52.35 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.90 Total: 42.45 kcal Total: -78.75 0.80 -77.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329900491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.947 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds