Wall clock time and date at job start Tue Mar 31 2020 19:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50703 * 119.99709 * 2 1 4 4 C 1.32992 * 120.00416 * 180.02562 * 2 1 3 5 5 C 1.47112 * 119.99337 * 3.15243 * 4 2 1 6 6 O 1.21607 * 120.00074 * 5.65088 * 5 4 2 7 7 N 1.34778 * 119.99263 * 185.65013 * 5 4 2 8 8 C 1.46505 * 119.99378 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46785 * 174.75247 * 8 7 5 10 10 H 1.09003 * 108.66839 * 177.78920 * 9 8 7 11 11 C 1.45869 * 108.79548 * 296.08942 * 9 8 7 12 12 C 1.54502 * 111.59918 * 182.21195 * 11 9 8 13 13 C 1.50471 * 108.84291 * 282.79614 * 12 11 9 14 14 C 1.54288 * 113.02845 * 92.16235 * 13 12 11 15 15 C 1.54075 * 112.28963 * 318.30116 * 14 13 12 16 16 N 1.44269 * 111.98078 * 318.91494 * 15 14 13 17 17 C 1.46904 * 110.99810 * 219.31173 * 16 15 14 18 18 C 1.50704 * 109.46924 * 302.54707 * 17 16 15 19 19 O 1.21293 * 119.99944 * 1.11260 * 18 17 16 20 20 N 1.34777 * 119.99919 * 181.11621 * 18 17 16 21 21 C 1.37101 * 119.99855 * 179.97438 * 20 18 17 22 22 H 1.07993 * 119.99878 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99790 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00038 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99791 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47220 * 90.00271 * 25 23 21 27 27 H 1.48509 * 109.47123 * 209.99768 * 25 23 21 28 28 H 1.48498 * 109.47379 * 329.99652 * 25 23 21 29 29 H 1.09003 * 109.47130 * 235.79611 * 1 2 3 30 30 H 1.09001 * 109.47155 * 355.79321 * 1 2 3 31 31 H 1.08993 * 109.47412 * 115.79569 * 1 2 3 32 32 H 1.09004 * 109.46708 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47475 * 299.99852 * 3 2 1 34 34 H 1.08992 * 109.47499 * 60.00339 * 3 2 1 35 35 H 1.07997 * 120.00711 * 183.15581 * 4 2 1 36 36 H 0.96996 * 120.00625 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46929 * 54.75422 * 8 7 5 38 38 H 1.08992 * 109.47434 * 294.75404 * 8 7 5 39 39 H 1.08995 * 109.05596 * 302.75597 * 11 9 8 40 40 H 1.08999 * 109.05000 * 61.73628 * 11 9 8 41 41 H 1.09003 * 109.57506 * 42.60216 * 12 11 9 42 42 H 1.08995 * 109.57633 * 162.99400 * 12 11 9 43 43 H 1.08999 * 108.76563 * 213.07308 * 13 12 11 44 44 H 1.09001 * 108.77054 * 331.36171 * 13 12 11 45 45 H 1.08998 * 108.92166 * 79.02451 * 14 13 12 46 46 H 1.08999 * 108.91944 * 197.58134 * 14 13 12 47 47 H 1.09004 * 108.97832 * 79.55805 * 15 14 13 48 48 H 1.08999 * 108.97791 * 198.26982 * 15 14 13 49 49 H 1.08996 * 109.47533 * 62.54299 * 17 16 15 50 50 H 1.08995 * 109.46864 * 182.54797 * 17 16 15 51 51 H 0.97000 * 120.00114 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4381 -2.4247 -0.0712 6 8 0.2327 -2.4235 -0.2325 7 7 2.1017 -3.5922 0.0429 8 6 1.3707 -4.8600 -0.0269 9 6 2.3641 -6.0234 -0.0020 10 1 1.8056 -6.9594 -0.0146 11 6 3.1961 -5.9566 -1.1983 12 6 4.1898 -7.1376 -1.2666 13 6 5.3286 -6.8699 -0.3202 14 6 5.0989 -7.4658 1.0844 15 6 3.6520 -7.2655 1.5746 16 7 3.1482 -5.9535 1.2489 17 6 2.3380 -5.4127 2.3485 18 6 1.2051 -6.3596 2.6505 19 8 1.0962 -7.3937 2.0260 20 7 0.3129 -6.0573 3.6144 21 6 -0.7180 -6.9184 3.8887 22 1 -0.8149 -7.8392 3.3327 23 6 -1.6375 -6.6070 4.8827 24 7 -1.5187 -5.4872 5.5603 25 14 -3.0417 -7.7806 5.2570 26 1 -2.6146 -8.7467 6.3008 27 1 -4.2138 -7.0105 5.7453 28 1 -3.4133 -8.5177 4.0225 29 1 -0.3633 -0.5777 0.8499 30 1 -0.3633 1.0249 0.0754 31 1 -0.3634 -0.4472 -0.9252 32 1 3.3321 1.1060 -0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8767 0.8899 35 1 3.2508 -1.1525 0.0510 36 1 3.0630 -3.5932 0.1720 37 1 0.7924 -4.8956 -0.9501 38 1 0.6975 -4.9387 0.8267 39 1 2.5549 -5.9797 -2.0794 40 1 3.7562 -5.0215 -1.1904 41 1 3.6832 -8.0584 -0.9772 42 1 4.5739 -7.2335 -2.2821 43 1 6.2398 -7.2979 -0.7380 44 1 5.4596 -5.7920 -0.2250 45 1 5.3177 -8.5332 1.0556 46 1 5.7798 -6.9860 1.7874 47 1 3.0130 -8.0162 1.1095 48 1 3.6227 -7.3981 2.6561 49 1 2.9606 -5.2966 3.2356 50 1 1.9336 -4.4429 2.0590 51 1 0.4002 -5.2304 4.1140 52 1 -2.1604 -5.2700 6.2545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329900494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:04 Heat of formation + Delta-G solvation = -53.507041 kcal Electronic energy + Delta-G solvation = -31287.652427 eV Core-core repulsion = 27287.400069 eV Total energy + Delta-G solvation = -4000.252357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50409 -39.21909 -37.57934 -35.73148 -34.72108 -34.27781 -33.36756 -32.08796 -31.29358 -28.66451 -28.19821 -27.78960 -26.47398 -25.24942 -23.77547 -22.95043 -21.31642 -19.94949 -19.70887 -18.98834 -18.63914 -17.74415 -16.94036 -16.26480 -15.95068 -15.58795 -15.13803 -14.90836 -14.67250 -14.35912 -14.28485 -14.06029 -13.99651 -13.73612 -13.56163 -13.33615 -13.12993 -12.63688 -12.47702 -12.40388 -12.31285 -12.17388 -11.98341 -11.76981 -11.64298 -11.60461 -11.43326 -11.14016 -10.90557 -10.66342 -10.54246 -10.41710 -10.37802 -10.24675 -10.14462 -10.02417 -9.50788 -9.41327 -9.21285 -9.12661 -8.64985 -7.99567 -7.58044 -6.43964 -3.85202 1.42989 3.15278 3.25007 3.30680 3.44128 3.52024 3.85082 4.15246 4.22224 4.71813 4.76261 4.78740 4.98040 5.09058 5.15476 5.21246 5.23235 5.27345 5.32632 5.37221 5.41368 5.53957 5.58994 5.63179 5.66527 5.72698 5.79059 5.91364 5.93168 5.97995 6.01796 6.09908 6.12890 6.17177 6.19771 6.25090 6.33575 6.38194 6.40622 6.47497 6.48323 6.54307 6.60594 6.65511 6.74977 7.34723 7.47957 7.52331 7.81404 8.01606 8.51361 8.56181 9.13970 9.50244 9.99902 10.72711 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007196 B = 0.004537 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.916848 B = 6169.569240 C = 9242.690197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.125 4.125 4 C -0.231 4.231 5 C 0.538 3.462 6 O -0.542 6.542 7 N -0.716 5.716 8 C 0.115 3.885 9 C 0.068 3.932 10 H 0.084 0.916 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.110 4.110 15 C 0.060 3.940 16 N -0.497 5.497 17 C 0.029 3.971 18 C 0.407 3.593 19 O -0.597 6.597 20 N -0.555 5.555 21 C -0.302 4.302 22 H 0.102 0.898 23 C 0.025 3.975 24 N -0.897 5.897 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.405 0.595 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 8.631 -11.002 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.041 4.041 3 C -0.181 4.181 4 C -0.252 4.252 5 C 0.327 3.673 6 O -0.422 6.422 7 N -0.369 5.369 8 C -0.009 4.009 9 C -0.040 4.040 10 H 0.102 0.898 11 C -0.144 4.144 12 C -0.153 4.153 13 C -0.143 4.143 14 C -0.149 4.149 15 C -0.069 4.069 16 N -0.220 5.220 17 C -0.103 4.103 18 C 0.192 3.808 19 O -0.484 6.484 20 N -0.190 5.190 21 C -0.432 4.432 22 H 0.120 0.880 23 C -0.177 4.177 24 N -0.538 5.538 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.240 0.760 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.398 8.318 -11.445 18.812 hybrid contribution -0.852 -0.649 0.980 1.452 sum 11.546 7.670 -10.465 17.368 Atomic orbital electron populations 1.21010 0.90812 1.00910 1.04594 1.22539 0.96937 0.94403 0.90182 1.20997 0.99748 0.94619 1.02766 1.22422 0.99896 0.92111 1.10806 1.18589 0.87284 0.84392 0.77016 1.90796 1.14337 1.87703 1.49352 1.45958 1.11786 1.05382 1.73740 1.21687 0.94532 0.81916 1.02790 1.20875 0.93574 0.98823 0.90721 0.89821 1.20620 0.98157 0.98852 0.96759 1.21325 0.96723 0.98656 0.98618 1.21167 0.97062 1.01424 0.94682 1.22005 0.97072 0.99514 0.96294 1.21830 0.94399 0.90414 1.00275 1.62085 1.33428 1.24641 1.01840 1.22442 0.94099 0.98874 0.94891 1.20950 0.86287 0.89279 0.84282 1.90481 1.76961 1.27707 1.53223 1.42012 1.24029 1.21326 1.31651 1.19694 1.03167 1.02893 1.17397 0.87983 1.25277 0.99174 0.97030 0.96253 1.69615 1.37580 1.23193 1.23396 0.85879 0.80059 0.79631 0.78848 1.20404 1.20846 1.19416 0.89978 0.93180 0.89764 0.91511 0.90694 0.90660 0.85848 0.75958 0.91423 0.90592 0.91989 0.91794 0.91844 0.92530 0.93575 0.91799 0.92781 0.92649 0.91917 0.92331 0.89574 0.88457 0.77473 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.33 36.00 0.30 -1.14 16 2 C -0.04 -0.42 6.11 -101.17 -0.62 -1.04 16 3 C -0.12 -0.93 10.05 36.01 0.36 -0.56 16 4 C -0.23 -2.67 9.64 -37.80 -0.36 -3.04 16 5 C 0.54 8.00 7.70 -12.66 -0.10 7.90 16 6 O -0.54 -10.06 13.14 5.27 0.07 -9.99 16 7 N -0.72 -9.68 3.74 -61.49 -0.23 -9.91 16 8 C 0.11 1.84 4.36 -4.04 -0.02 1.82 16 9 C 0.07 1.02 1.18 -70.59 -0.08 0.94 16 10 H 0.08 1.54 5.85 -51.93 -0.30 1.24 16 11 C -0.11 -1.27 4.62 -29.32 -0.14 -1.41 16 12 C -0.12 -1.31 5.60 -27.21 -0.15 -1.46 16 13 C -0.11 -1.16 5.42 -27.32 -0.15 -1.31 16 14 C -0.11 -1.36 6.14 -25.50 -0.16 -1.52 16 15 C 0.06 0.94 3.78 -4.67 -0.02 0.92 16 16 N -0.50 -7.43 4.01 -232.89 -0.93 -8.36 16 17 C 0.03 0.49 5.04 -4.97 -0.03 0.47 16 18 C 0.41 9.15 5.72 -10.98 -0.06 9.09 16 19 O -0.60 -14.83 11.96 5.55 0.07 -14.77 16 20 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.67 5.50 -17.47 -0.10 0.58 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 1.21 7.32 -51.93 -0.38 0.83 16 30 H 0.05 0.49 8.01 -51.93 -0.42 0.08 16 31 H 0.08 1.15 7.16 -51.93 -0.37 0.78 16 32 H 0.07 0.42 7.81 -51.93 -0.41 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.09 7.87 -52.49 -0.41 0.68 16 36 H 0.40 4.65 7.35 -40.82 -0.30 4.35 16 37 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.08 1.51 5.41 -51.93 -0.28 1.23 16 39 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.06 0.81 7.15 -51.93 -0.37 0.44 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 1.14 5.49 -51.93 -0.28 0.86 16 48 H 0.06 1.02 7.32 -51.93 -0.38 0.64 16 49 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 50 H 0.10 1.64 5.11 -51.93 -0.27 1.38 16 51 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 52 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -30.64 393.12 -9.44 -40.08 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -8.52 Total: 17.03 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.46 Total: 1.71 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.50 Total: -56.22 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.14 Total: -24.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.64 -9.44 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329900494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.429 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds