Wall clock time and date at job start Tue Mar 31 2020 19:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50703 * 119.99709 * 2 1 4 4 C 1.32992 * 120.00416 * 180.02562 * 2 1 3 5 5 C 1.47112 * 119.99337 * 3.15243 * 4 2 1 6 6 O 1.21607 * 120.00074 * 5.65088 * 5 4 2 7 7 N 1.34778 * 119.99263 * 185.65013 * 5 4 2 8 8 C 1.46505 * 119.99378 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46785 * 174.75247 * 8 7 5 10 10 H 1.09003 * 108.66839 * 177.78920 * 9 8 7 11 11 C 1.45869 * 108.79548 * 296.08942 * 9 8 7 12 12 C 1.54502 * 111.59918 * 182.21195 * 11 9 8 13 13 C 1.50471 * 108.84291 * 282.79614 * 12 11 9 14 14 C 1.54288 * 113.02845 * 92.16235 * 13 12 11 15 15 C 1.54075 * 112.28963 * 318.30116 * 14 13 12 16 16 N 1.44269 * 111.98078 * 318.91494 * 15 14 13 17 17 C 1.46904 * 110.99810 * 219.31173 * 16 15 14 18 18 C 1.50704 * 109.46924 * 302.54707 * 17 16 15 19 19 O 1.21293 * 119.99944 * 1.11260 * 18 17 16 20 20 N 1.34777 * 119.99919 * 181.11621 * 18 17 16 21 21 C 1.37101 * 119.99855 * 179.97438 * 20 18 17 22 22 H 1.07993 * 119.99878 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99790 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00038 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99791 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47220 * 90.00271 * 25 23 21 27 27 H 1.48509 * 109.47123 * 209.99768 * 25 23 21 28 28 H 1.48498 * 109.47379 * 329.99652 * 25 23 21 29 29 H 1.09003 * 109.47130 * 235.79611 * 1 2 3 30 30 H 1.09001 * 109.47155 * 355.79321 * 1 2 3 31 31 H 1.08993 * 109.47412 * 115.79569 * 1 2 3 32 32 H 1.09004 * 109.46708 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47475 * 299.99852 * 3 2 1 34 34 H 1.08992 * 109.47499 * 60.00339 * 3 2 1 35 35 H 1.07997 * 120.00711 * 183.15581 * 4 2 1 36 36 H 0.96996 * 120.00625 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46929 * 54.75422 * 8 7 5 38 38 H 1.08992 * 109.47434 * 294.75404 * 8 7 5 39 39 H 1.08995 * 109.05596 * 302.75597 * 11 9 8 40 40 H 1.08999 * 109.05000 * 61.73628 * 11 9 8 41 41 H 1.09003 * 109.57506 * 42.60216 * 12 11 9 42 42 H 1.08995 * 109.57633 * 162.99400 * 12 11 9 43 43 H 1.08999 * 108.76563 * 213.07308 * 13 12 11 44 44 H 1.09001 * 108.77054 * 331.36171 * 13 12 11 45 45 H 1.08998 * 108.92166 * 79.02451 * 14 13 12 46 46 H 1.08999 * 108.91944 * 197.58134 * 14 13 12 47 47 H 1.09004 * 108.97832 * 79.55805 * 15 14 13 48 48 H 1.08999 * 108.97791 * 198.26982 * 15 14 13 49 49 H 1.08996 * 109.47533 * 62.54299 * 17 16 15 50 50 H 1.08995 * 109.46864 * 182.54797 * 17 16 15 51 51 H 0.97000 * 120.00114 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4381 -2.4247 -0.0712 6 8 0.2327 -2.4235 -0.2325 7 7 2.1017 -3.5922 0.0429 8 6 1.3707 -4.8600 -0.0269 9 6 2.3641 -6.0234 -0.0020 10 1 1.8056 -6.9594 -0.0146 11 6 3.1961 -5.9566 -1.1983 12 6 4.1898 -7.1376 -1.2666 13 6 5.3286 -6.8699 -0.3202 14 6 5.0989 -7.4658 1.0844 15 6 3.6520 -7.2655 1.5746 16 7 3.1482 -5.9535 1.2489 17 6 2.3380 -5.4127 2.3485 18 6 1.2051 -6.3596 2.6505 19 8 1.0962 -7.3937 2.0260 20 7 0.3129 -6.0573 3.6144 21 6 -0.7180 -6.9184 3.8887 22 1 -0.8149 -7.8392 3.3327 23 6 -1.6375 -6.6070 4.8827 24 7 -1.5187 -5.4872 5.5603 25 14 -3.0417 -7.7806 5.2570 26 1 -2.6146 -8.7467 6.3008 27 1 -4.2138 -7.0105 5.7453 28 1 -3.4133 -8.5177 4.0225 29 1 -0.3633 -0.5777 0.8499 30 1 -0.3633 1.0249 0.0754 31 1 -0.3634 -0.4472 -0.9252 32 1 3.3321 1.1060 -0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8767 0.8899 35 1 3.2508 -1.1525 0.0510 36 1 3.0630 -3.5932 0.1720 37 1 0.7924 -4.8956 -0.9501 38 1 0.6975 -4.9387 0.8267 39 1 2.5549 -5.9797 -2.0794 40 1 3.7562 -5.0215 -1.1904 41 1 3.6832 -8.0584 -0.9772 42 1 4.5739 -7.2335 -2.2821 43 1 6.2398 -7.2979 -0.7380 44 1 5.4596 -5.7920 -0.2250 45 1 5.3177 -8.5332 1.0556 46 1 5.7798 -6.9860 1.7874 47 1 3.0130 -8.0162 1.1095 48 1 3.6227 -7.3981 2.6561 49 1 2.9606 -5.2966 3.2356 50 1 1.9336 -4.4429 2.0590 51 1 0.4002 -5.2304 4.1140 52 1 -2.1604 -5.2700 6.2545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329900494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:03 Heat of formation + Delta-G solvation = -74.423134 kcal Electronic energy + Delta-G solvation = -31288.559416 eV Core-core repulsion = 27287.400069 eV Total energy + Delta-G solvation = -4001.159347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88894 -40.51610 -39.22579 -36.70320 -36.13522 -35.81809 -34.84717 -33.34391 -33.23675 -29.84160 -29.45246 -28.61521 -27.64147 -26.91237 -25.29196 -24.10125 -22.48553 -21.48590 -20.90344 -20.47004 -19.89065 -19.52006 -18.06301 -17.74667 -17.51284 -16.87140 -16.57970 -16.35695 -16.04201 -15.73395 -15.65250 -15.41505 -15.15298 -14.95960 -14.65269 -14.62797 -14.35711 -14.06882 -13.67357 -13.56344 -13.47658 -13.31711 -13.28018 -13.12269 -13.03450 -12.69900 -12.64476 -12.48379 -12.37424 -12.26006 -12.17021 -11.84917 -11.73145 -11.55145 -11.38205 -11.19000 -11.06868 -10.88303 -10.61402 -10.26163 -10.04841 -9.78109 -9.17062 -8.50429 -6.00331 0.47992 1.31642 1.35493 1.48256 1.97052 2.24592 2.29645 2.39373 2.89365 3.15847 3.20184 3.57143 3.87918 3.94160 3.97650 4.06250 4.22456 4.23735 4.32005 4.35569 4.37506 4.44093 4.49541 4.54119 4.61402 4.65013 4.71341 4.78468 4.80389 4.83919 4.90077 4.95305 5.03091 5.09159 5.09776 5.21089 5.26279 5.33522 5.34791 5.37538 5.45045 5.48433 5.52617 5.59005 5.64025 5.69068 5.87265 6.00203 6.12454 6.53035 6.70992 7.06852 7.37397 7.49983 8.03735 8.65612 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007196 B = 0.004537 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.916848 B = 6169.569240 C = 9242.690197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.120 4.120 4 C -0.240 4.240 5 C 0.529 3.471 6 O -0.589 6.589 7 N -0.700 5.700 8 C 0.125 3.875 9 C 0.081 3.919 10 H 0.044 0.956 11 C -0.103 4.103 12 C -0.113 4.113 13 C -0.103 4.103 14 C -0.103 4.103 15 C 0.063 3.937 16 N -0.472 5.472 17 C 0.040 3.960 18 C 0.411 3.589 19 O -0.621 6.621 20 N -0.571 5.571 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.268 1.268 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.419 0.581 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.031 0.969 48 H 0.037 0.963 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.860 10.351 -11.766 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.177 4.177 4 C -0.261 4.261 5 C 0.321 3.679 6 O -0.472 6.472 7 N -0.354 5.354 8 C 0.000 4.000 9 C -0.027 4.027 10 H 0.062 0.938 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.140 4.140 14 C -0.141 4.141 15 C -0.066 4.066 16 N -0.194 5.194 17 C -0.092 4.092 18 C 0.197 3.803 19 O -0.509 6.509 20 N -0.208 5.208 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.193 1.193 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.177 0.823 36 H 0.257 0.743 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.125 0.875 50 H 0.123 0.877 51 H 0.226 0.774 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.270 10.042 -12.213 21.981 hybrid contribution -1.753 -1.189 1.157 2.414 sum 13.516 8.853 -11.056 19.578 Atomic orbital electron populations 1.20938 0.92614 1.01589 1.02255 1.22863 0.96044 0.96143 0.88423 1.21059 1.00278 0.92475 1.03838 1.22524 1.01355 0.90146 1.12053 1.19321 0.86973 0.85691 0.75943 1.90786 1.16556 1.88353 1.51471 1.45764 1.12182 1.04153 1.73255 1.21370 0.94440 0.83771 1.00428 1.20784 0.93581 0.96321 0.92036 0.93788 1.20597 0.98207 1.00416 0.94869 1.21323 0.96476 0.97065 1.00206 1.21164 0.97588 1.01967 0.93292 1.21944 0.94094 1.00330 0.97774 1.21813 0.96473 0.89508 0.98816 1.62289 1.31882 1.24209 1.01026 1.22459 0.92490 0.97691 0.96561 1.21991 0.86436 0.89377 0.82447 1.90479 1.77647 1.29197 1.53571 1.42099 1.24521 1.21270 1.32871 1.19640 1.05128 1.03055 1.18450 0.90386 1.26044 1.01019 0.98573 0.95609 1.69681 1.38440 1.24218 1.23687 0.84966 0.77310 0.77824 0.78474 1.19317 1.19578 1.19941 0.93137 0.90695 0.91720 0.89659 0.89264 0.89659 0.82265 0.74291 0.92260 0.94980 0.91586 0.89707 0.93940 0.90181 0.91355 0.90928 0.92274 0.91278 0.95101 0.94388 0.87535 0.87722 0.77426 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.33 71.23 0.59 -2.31 16 2 C -0.03 -0.65 6.11 -17.62 -0.11 -0.76 16 3 C -0.12 -1.34 10.05 71.24 0.72 -0.62 16 4 C -0.24 -5.05 9.64 23.43 0.23 -4.82 16 5 C 0.53 15.71 7.70 86.57 0.67 16.38 16 6 O -0.59 -22.91 13.14 -4.05 -0.05 -22.97 16 7 N -0.70 -18.57 3.74 -466.70 -1.75 -20.31 16 8 C 0.12 4.18 4.36 86.38 0.38 4.56 16 9 C 0.08 2.47 1.18 42.56 0.05 2.52 16 10 H 0.04 1.73 5.85 -2.39 -0.01 1.72 16 11 C -0.10 -2.33 4.62 28.92 0.13 -2.20 16 12 C -0.11 -2.32 5.60 30.29 0.17 -2.15 16 13 C -0.10 -1.90 5.42 30.21 0.16 -1.74 16 14 C -0.10 -2.34 6.14 31.39 0.19 -2.15 16 15 C 0.06 1.99 3.78 87.16 0.33 2.32 16 16 N -0.47 -13.98 4.01 -890.74 -3.58 -17.56 16 17 C 0.04 1.39 5.04 85.56 0.43 1.82 16 18 C 0.41 19.44 5.72 87.66 0.50 19.94 16 19 O -0.62 -32.86 11.96 -3.07 -0.04 -32.89 16 20 N -0.57 -30.25 5.29 -306.98 -1.62 -31.88 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 24 N -0.92 -51.46 13.05 21.66 0.28 -51.18 16 25 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H 0.05 1.56 7.32 -2.39 -0.02 1.55 16 30 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 31 H 0.06 1.84 7.16 -2.39 -0.02 1.83 16 32 H 0.08 0.68 7.81 -2.38 -0.02 0.66 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.16 2.16 7.87 -2.91 -0.02 2.13 16 36 H 0.42 8.65 7.35 -92.71 -0.68 7.97 16 37 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 38 H 0.03 1.36 5.41 -2.39 -0.01 1.35 16 39 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.08 1.61 6.44 -2.39 -0.02 1.59 16 41 H 0.04 1.06 7.15 -2.39 -0.02 1.04 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.26 7.38 -2.39 -0.02 1.25 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.03 1.18 5.49 -2.38 -0.01 1.16 16 48 H 0.04 1.34 7.32 -2.39 -0.02 1.32 16 49 H 0.11 3.36 8.11 -2.39 -0.02 3.34 16 50 H 0.10 3.58 5.11 -2.39 -0.01 3.57 16 51 H 0.39 20.28 7.90 -92.71 -0.73 19.55 16 52 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -72.18 393.12 0.53 -71.66 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.47 Total: 46.67 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.72 Total: 11.97 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -6.66 Total: -120.93 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.09 Total: -55.86 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.18 0.53 -71.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329900494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.766 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds