Wall clock time and date at job start Tue Mar 31 2020 19:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 H 1.08997 * 115.54727 * 29.33244 * 3 2 1 5 5 C 1.53070 * 117.51458 * 243.60660 * 3 2 1 6 6 C 1.53000 * 59.98711 * 252.51971 * 5 3 2 7 7 H 1.09005 * 117.49546 * 107.49568 * 6 5 3 8 8 C 1.50692 * 117.50459 * 252.49784 * 6 5 3 9 9 O 1.21283 * 119.99640 * 68.74273 * 8 6 5 10 10 N 1.34776 * 120.00207 * 248.74676 * 8 6 5 11 11 C 1.46500 * 120.00251 * 179.97438 * 10 8 6 12 12 H 1.08999 * 110.36577 * 32.81783 * 11 10 8 13 13 C 1.54382 * 110.32519 * 270.64017 * 11 10 8 14 14 N 1.48557 * 104.59361 * 217.25025 * 13 11 10 15 15 C 1.46900 * 110.99787 * 159.04139 * 14 13 11 16 16 C 1.50698 * 109.47196 * 54.58363 * 15 14 13 17 17 O 1.21291 * 120.00251 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00140 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00352 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00041 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99964 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00617 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46736 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47350 * 119.99672 * 23 21 19 26 26 H 1.48504 * 109.47438 * 240.00324 * 23 21 19 27 27 C 1.48561 * 104.22300 * 39.48238 * 14 13 11 28 28 C 1.54259 * 110.32361 * 155.00297 * 11 10 8 29 29 C 1.52997 * 110.32406 * 0.02562 * 28 11 10 30 30 C 1.53001 * 110.40814 * 237.83639 * 28 11 10 31 31 H 1.09002 * 109.46528 * 299.99938 * 1 2 3 32 32 H 1.09004 * 109.46815 * 59.99600 * 1 2 3 33 33 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47182 * 240.00410 * 2 1 3 35 35 H 1.09005 * 109.47392 * 119.99910 * 2 1 3 36 36 H 1.09000 * 117.50999 * 145.04429 * 5 3 2 37 37 H 1.09001 * 117.49597 * 0.02562 * 5 3 2 38 38 H 0.96996 * 119.99666 * 0.02562 * 10 8 6 39 39 H 1.09007 * 110.41205 * 98.46957 * 13 11 10 40 40 H 1.08998 * 110.41134 * 336.02965 * 13 11 10 41 41 H 1.09005 * 109.46721 * 174.58114 * 15 14 13 42 42 H 1.09001 * 109.47168 * 294.57515 * 15 14 13 43 43 H 0.97008 * 119.99596 * 0.02562 * 18 16 15 44 44 H 0.96998 * 120.00395 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.41090 * 201.73812 * 27 14 13 46 46 H 1.09002 * 110.51001 * 79.34849 * 27 14 13 47 47 H 1.09002 * 109.47153 * 177.09152 * 29 28 11 48 48 H 1.09001 * 109.46832 * 57.09343 * 29 28 11 49 49 H 1.09004 * 109.47261 * 297.09324 * 29 28 11 50 50 H 1.08999 * 109.47170 * 181.48101 * 30 28 11 51 51 H 1.08996 * 109.47396 * 301.48920 * 30 28 11 52 52 H 1.09004 * 109.46891 * 61.48334 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 4.1804 0.7719 0.1962 8 6 4.0229 2.8616 0.8920 9 8 3.2159 3.6152 1.3937 10 7 5.3425 3.1008 1.0263 11 6 5.8020 4.2713 1.7779 12 1 5.1130 4.4934 2.5927 13 6 5.9358 5.4913 0.8414 14 7 7.1403 6.2093 1.3318 15 6 7.6923 7.0846 0.2890 16 6 6.6153 8.0135 -0.2090 17 8 5.4977 7.9522 0.2582 18 7 6.8939 8.9125 -1.1738 19 6 5.9141 9.7572 -1.6273 20 1 4.9189 9.7027 -1.2112 21 6 6.2012 10.6837 -2.6222 22 7 7.4119 10.7498 -3.1289 23 14 4.8663 11.8353 -3.2398 24 1 3.6009 11.5612 -2.5125 25 1 5.2778 13.2423 -3.0031 26 1 4.6589 11.6181 -4.6941 27 6 8.0957 5.1255 1.6779 28 6 7.2229 4.0307 2.3281 29 6 7.7222 2.6427 1.9218 30 6 7.2368 4.1751 3.8513 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.7225 2.9433 -1.5344 37 1 3.0103 1.1865 -2.0162 38 1 5.9879 2.4983 0.6247 39 1 5.0551 6.1289 0.9194 40 1 6.0804 5.1657 -0.1887 41 1 8.5137 7.6694 0.7030 42 1 8.0596 6.4772 -0.5382 43 1 7.7877 8.9613 -1.5477 44 1 7.6125 11.3968 -3.8232 45 1 8.8412 5.4877 2.3857 46 1 8.5800 4.7421 0.7798 47 1 8.7451 2.5073 2.2730 48 1 7.6957 2.5506 0.8360 49 1 7.0814 1.8814 2.3668 50 1 8.2516 4.0282 4.2210 51 1 6.8910 5.1719 4.1249 52 1 6.5774 3.4279 4.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330228968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:34 Heat of formation + Delta-G solvation = -45.977563 kcal Electronic energy + Delta-G solvation = -30064.588297 eV Core-core repulsion = 26064.662442 eV Total energy + Delta-G solvation = -3999.925855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58240 -39.32918 -37.99080 -36.97306 -34.71460 -33.83683 -33.16490 -32.27264 -31.25565 -29.21295 -27.51452 -27.35561 -25.20898 -24.70883 -23.98211 -23.18385 -21.35455 -20.67957 -20.07320 -19.44403 -18.85467 -17.81211 -17.44851 -16.29384 -15.92346 -15.37435 -15.23393 -14.97328 -14.73592 -14.68811 -14.42166 -14.13777 -14.00183 -13.82007 -13.71521 -13.20100 -12.98923 -12.78071 -12.65832 -12.59197 -12.34312 -12.28802 -11.85586 -11.78430 -11.59589 -11.54908 -11.51952 -11.27701 -11.23015 -11.05408 -10.97700 -10.70287 -10.52982 -10.47143 -10.31240 -10.24352 -10.21010 -9.75768 -9.49414 -8.98415 -8.40697 -8.01456 -7.89845 -6.40934 -3.81415 2.50709 3.05269 3.17307 3.27964 3.35915 3.66599 3.90655 4.09281 4.28776 4.35344 4.46266 4.55924 4.61088 4.63817 4.80879 4.91724 4.97377 5.05738 5.06876 5.17180 5.21546 5.26078 5.29291 5.40969 5.45492 5.51481 5.55593 5.57300 5.61734 5.66477 5.72915 5.74516 5.75932 5.85262 5.89719 5.90974 5.94936 5.97280 6.03404 6.15413 6.20989 6.26736 6.27696 6.51009 6.71952 7.18622 7.27374 7.51218 7.56909 8.07482 8.27998 8.62754 9.19425 9.54787 10.06867 10.76905 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.002972 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.028713 B = 9419.580433 C =11820.218129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.118 4.118 4 H 0.119 0.881 5 C -0.149 4.149 6 C -0.192 4.192 7 H 0.120 0.880 8 C 0.539 3.461 9 O -0.533 6.533 10 N -0.721 5.721 11 C 0.145 3.855 12 H 0.100 0.900 13 C 0.030 3.970 14 N -0.484 5.484 15 C 0.035 3.965 16 C 0.441 3.559 17 O -0.577 6.577 18 N -0.563 5.563 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.037 3.963 28 C -0.075 4.075 29 C -0.143 4.143 30 C -0.133 4.133 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.120 0.880 40 H 0.037 0.963 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -23.163 6.483 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.137 4.137 4 H 0.137 0.863 5 C -0.186 4.186 6 C -0.213 4.213 7 H 0.138 0.862 8 C 0.326 3.674 9 O -0.409 6.409 10 N -0.375 5.375 11 C 0.040 3.960 12 H 0.118 0.882 13 C -0.099 4.099 14 N -0.208 5.208 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.461 6.461 18 N -0.200 5.200 19 C -0.426 4.426 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.092 4.092 28 C -0.077 4.077 29 C -0.201 4.201 30 C -0.190 4.190 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.138 0.862 40 H 0.055 0.945 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.372 -22.159 7.468 23.424 hybrid contribution 0.828 -0.046 -1.675 1.869 sum -0.544 -22.205 5.793 22.954 Atomic orbital electron populations 1.21744 0.95154 1.01543 1.02320 1.21147 0.96331 0.93664 1.01962 1.22494 0.91331 0.98639 1.01243 0.86323 1.23138 1.01821 1.03493 0.90163 1.22296 0.97744 0.98853 1.02409 0.86206 1.19680 0.82437 0.85471 0.79852 1.90731 1.53852 1.48400 1.47889 1.46248 1.06967 1.28484 1.55801 1.21920 0.94810 0.84569 0.94693 0.88170 1.23716 0.96930 0.93908 0.95325 1.65222 1.03969 1.14982 1.36646 1.22093 0.97854 0.96170 0.93531 1.19723 0.89368 0.84677 0.83565 1.90480 1.23298 1.72202 1.60095 1.41851 1.13286 1.31326 1.33493 1.19755 0.93526 1.11821 1.17520 0.87850 1.25260 0.97338 0.98470 0.96918 1.69620 1.19456 1.36978 1.28338 0.85808 0.80707 0.79498 0.78406 1.19171 1.20728 1.20782 1.23324 0.95348 0.91240 0.99270 1.21535 0.94316 0.94953 0.96853 1.21867 1.01554 0.95919 1.00729 1.21806 1.01553 1.02720 0.92913 0.92434 0.92427 0.92699 0.91737 0.91535 0.87994 0.87859 0.76383 0.86186 0.94463 0.89039 0.93425 0.77504 0.91951 0.89899 0.93902 0.91834 0.92646 0.91961 0.92469 0.91272 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 37.16 0.37 -0.70 16 2 C -0.09 -0.69 6.22 -26.73 -0.17 -0.86 16 3 C -0.12 -1.17 5.25 -90.58 -0.48 -1.65 16 4 H 0.12 1.44 7.60 -51.93 -0.39 1.04 16 5 C -0.15 -1.44 9.88 -26.70 -0.26 -1.70 16 6 C -0.19 -1.93 5.91 -91.77 -0.54 -2.47 16 7 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.54 7.45 7.61 -10.99 -0.08 7.36 16 9 O -0.53 -9.77 15.91 5.55 0.09 -9.68 16 10 N -0.72 -8.67 4.57 -52.47 -0.24 -8.91 16 11 C 0.15 2.05 3.04 -66.55 -0.20 1.85 16 12 H 0.10 1.63 7.13 -51.93 -0.37 1.26 16 13 C 0.03 0.53 5.03 -2.18 -0.01 0.52 16 14 N -0.48 -8.26 5.34 -231.41 -1.23 -9.50 16 15 C 0.04 0.65 5.55 -4.98 -0.03 0.62 16 16 C 0.44 10.62 7.50 -10.99 -0.08 10.54 16 17 O -0.58 -15.84 13.24 5.55 0.07 -15.76 16 18 N -0.56 -14.48 5.29 -10.97 -0.06 -14.54 16 19 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.04 0.46 5.58 -2.18 -0.01 0.45 16 28 C -0.08 -0.83 1.03 -153.13 -0.16 -0.99 16 29 C -0.14 -1.15 7.12 37.16 0.26 -0.89 16 30 C -0.13 -1.36 8.24 37.16 0.31 -1.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 38 H 0.40 3.65 5.86 -40.82 -0.24 3.41 16 39 H 0.12 2.74 6.05 -51.93 -0.31 2.42 16 40 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 43 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 46 H 0.04 0.50 7.54 -51.93 -0.39 0.11 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.05 0.42 6.78 -51.93 -0.35 0.07 16 49 H 0.06 0.46 7.91 -51.93 -0.41 0.05 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 52 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -33.36 412.63 -9.79 -43.15 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -9.01 Total: 13.73 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.33 Total: 2.98 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.81 Total: -57.01 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.16 Total: -25.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.36 -9.79 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330228968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.824 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds