Wall clock time and date at job start Tue Mar 31 2020 19:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 H 1.08997 * 115.54727 * 29.33244 * 3 2 1 5 5 C 1.53070 * 117.51458 * 243.60660 * 3 2 1 6 6 C 1.53000 * 59.98711 * 252.51971 * 5 3 2 7 7 H 1.09005 * 117.49546 * 107.49568 * 6 5 3 8 8 C 1.50692 * 117.50459 * 252.49784 * 6 5 3 9 9 O 1.21283 * 119.99640 * 68.74273 * 8 6 5 10 10 N 1.34776 * 120.00207 * 248.74676 * 8 6 5 11 11 C 1.46500 * 120.00251 * 179.97438 * 10 8 6 12 12 H 1.08999 * 110.36577 * 32.81783 * 11 10 8 13 13 C 1.54382 * 110.32519 * 270.64017 * 11 10 8 14 14 N 1.48557 * 104.59361 * 217.25025 * 13 11 10 15 15 C 1.46900 * 110.99787 * 159.04139 * 14 13 11 16 16 C 1.50698 * 109.47196 * 54.58363 * 15 14 13 17 17 O 1.21291 * 120.00251 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00140 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00352 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00041 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99964 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00617 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46736 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47350 * 119.99672 * 23 21 19 26 26 H 1.48504 * 109.47438 * 240.00324 * 23 21 19 27 27 C 1.48561 * 104.22300 * 39.48238 * 14 13 11 28 28 C 1.54259 * 110.32361 * 155.00297 * 11 10 8 29 29 C 1.52997 * 110.32406 * 0.02562 * 28 11 10 30 30 C 1.53001 * 110.40814 * 237.83639 * 28 11 10 31 31 H 1.09002 * 109.46528 * 299.99938 * 1 2 3 32 32 H 1.09004 * 109.46815 * 59.99600 * 1 2 3 33 33 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47182 * 240.00410 * 2 1 3 35 35 H 1.09005 * 109.47392 * 119.99910 * 2 1 3 36 36 H 1.09000 * 117.50999 * 145.04429 * 5 3 2 37 37 H 1.09001 * 117.49597 * 0.02562 * 5 3 2 38 38 H 0.96996 * 119.99666 * 0.02562 * 10 8 6 39 39 H 1.09007 * 110.41205 * 98.46957 * 13 11 10 40 40 H 1.08998 * 110.41134 * 336.02965 * 13 11 10 41 41 H 1.09005 * 109.46721 * 174.58114 * 15 14 13 42 42 H 1.09001 * 109.47168 * 294.57515 * 15 14 13 43 43 H 0.97008 * 119.99596 * 0.02562 * 18 16 15 44 44 H 0.96998 * 120.00395 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.41090 * 201.73812 * 27 14 13 46 46 H 1.09002 * 110.51001 * 79.34849 * 27 14 13 47 47 H 1.09002 * 109.47153 * 177.09152 * 29 28 11 48 48 H 1.09001 * 109.46832 * 57.09343 * 29 28 11 49 49 H 1.09004 * 109.47261 * 297.09324 * 29 28 11 50 50 H 1.08999 * 109.47170 * 181.48101 * 30 28 11 51 51 H 1.08996 * 109.47396 * 301.48920 * 30 28 11 52 52 H 1.09004 * 109.46891 * 61.48334 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 4.1804 0.7719 0.1962 8 6 4.0229 2.8616 0.8920 9 8 3.2159 3.6152 1.3937 10 7 5.3425 3.1008 1.0263 11 6 5.8020 4.2713 1.7779 12 1 5.1130 4.4934 2.5927 13 6 5.9358 5.4913 0.8414 14 7 7.1403 6.2093 1.3318 15 6 7.6923 7.0846 0.2890 16 6 6.6153 8.0135 -0.2090 17 8 5.4977 7.9522 0.2582 18 7 6.8939 8.9125 -1.1738 19 6 5.9141 9.7572 -1.6273 20 1 4.9189 9.7027 -1.2112 21 6 6.2012 10.6837 -2.6222 22 7 7.4119 10.7498 -3.1289 23 14 4.8663 11.8353 -3.2398 24 1 3.6009 11.5612 -2.5125 25 1 5.2778 13.2423 -3.0031 26 1 4.6589 11.6181 -4.6941 27 6 8.0957 5.1255 1.6779 28 6 7.2229 4.0307 2.3281 29 6 7.7222 2.6427 1.9218 30 6 7.2368 4.1751 3.8513 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.7225 2.9433 -1.5344 37 1 3.0103 1.1865 -2.0162 38 1 5.9879 2.4983 0.6247 39 1 5.0551 6.1289 0.9194 40 1 6.0804 5.1657 -0.1887 41 1 8.5137 7.6694 0.7030 42 1 8.0596 6.4772 -0.5382 43 1 7.7877 8.9613 -1.5477 44 1 7.6125 11.3968 -3.8232 45 1 8.8412 5.4877 2.3857 46 1 8.5800 4.7421 0.7798 47 1 8.7451 2.5073 2.2730 48 1 7.6957 2.5506 0.8360 49 1 7.0814 1.8814 2.3668 50 1 8.2516 4.0282 4.2210 51 1 6.8910 5.1719 4.1249 52 1 6.5774 3.4279 4.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330228968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:33 Heat of formation + Delta-G solvation = -70.346251 kcal Electronic energy + Delta-G solvation = -30065.645003 eV Core-core repulsion = 26064.662442 eV Total energy + Delta-G solvation = -4000.982560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72751 -40.60657 -39.64576 -37.94270 -36.27719 -35.60485 -34.29543 -33.34111 -32.91275 -30.53699 -28.74947 -28.26921 -26.76261 -25.95637 -24.78355 -24.34479 -22.63243 -21.49490 -21.19220 -21.03372 -20.13670 -19.78470 -18.47663 -17.69946 -17.41664 -16.68241 -16.51926 -16.40522 -16.04215 -15.82404 -15.69943 -15.32705 -15.24941 -15.04312 -15.00530 -14.42514 -14.16776 -13.99877 -13.65375 -13.55541 -13.42685 -13.24971 -13.09528 -13.06111 -13.01893 -12.84939 -12.58239 -12.47013 -12.45285 -12.21079 -12.16459 -11.95368 -11.86154 -11.75157 -11.59000 -11.50995 -11.27903 -11.07104 -10.80314 -10.31252 -10.11506 -10.02425 -9.41417 -8.50964 -5.99484 1.32369 1.37742 1.43534 1.52111 1.99585 2.02701 2.25652 2.82143 2.86914 3.15146 3.25530 3.46821 3.61894 3.65473 3.73832 3.83468 3.88862 4.14139 4.16665 4.19674 4.25980 4.29525 4.36082 4.42448 4.47329 4.49940 4.55931 4.68497 4.73395 4.75276 4.78594 4.85154 4.93055 4.95111 5.00578 5.05000 5.12009 5.13832 5.19945 5.21134 5.29023 5.32283 5.37245 5.39275 5.44528 5.48895 5.79132 5.89837 6.06872 6.50921 6.56707 7.09223 7.23187 7.50804 8.08189 8.66699 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.002972 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.028713 B = 9419.580433 C =11820.218129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.145 4.145 6 C -0.186 4.186 7 H 0.161 0.839 8 C 0.529 3.471 9 O -0.590 6.590 10 N -0.704 5.704 11 C 0.152 3.848 12 H 0.069 0.931 13 C 0.038 3.962 14 N -0.504 5.504 15 C 0.048 3.952 16 C 0.435 3.565 17 O -0.618 6.618 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.278 1.278 25 H -0.268 1.268 26 H -0.268 1.268 27 C 0.037 3.963 28 C -0.065 4.065 29 C -0.139 4.139 30 C -0.130 4.130 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.417 0.583 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.397 0.603 44 H 0.279 0.721 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.043 0.957 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -26.059 5.875 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.142 4.142 4 H 0.103 0.897 5 C -0.183 4.183 6 C -0.207 4.207 7 H 0.179 0.821 8 C 0.317 3.683 9 O -0.471 6.471 10 N -0.359 5.359 11 C 0.046 3.954 12 H 0.087 0.913 13 C -0.091 4.091 14 N -0.228 5.228 15 C -0.083 4.083 16 C 0.222 3.778 17 O -0.504 6.504 18 N -0.208 5.208 19 C -0.462 4.462 20 H 0.091 0.909 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.203 1.203 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.090 4.090 28 C -0.067 4.067 29 C -0.197 4.197 30 C -0.188 4.188 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.258 0.742 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.062 0.938 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.152 -25.090 6.843 26.032 hybrid contribution 0.038 0.900 -1.444 1.702 sum 1.190 -24.190 5.399 24.814 Atomic orbital electron populations 1.21764 0.95309 1.02342 1.01557 1.21147 0.96165 0.91623 1.03359 1.22501 0.90899 0.99729 1.01071 0.89734 1.23193 1.01467 1.02766 0.90830 1.22382 0.98328 0.98216 1.01743 0.82104 1.20498 0.82435 0.86040 0.79291 1.90712 1.55358 1.50648 1.50352 1.46117 1.06950 1.27785 1.55037 1.21641 0.96656 0.84002 0.93095 0.91259 1.23366 0.95377 0.94537 0.95831 1.65153 1.04929 1.16784 1.35974 1.21994 0.95854 0.95722 0.94774 1.20845 0.90209 0.84438 0.82295 1.90491 1.25665 1.73190 1.61083 1.41900 1.13022 1.31687 1.34228 1.19634 0.93278 1.14062 1.19254 0.90852 1.26008 0.99579 0.99176 0.96312 1.69666 1.20466 1.37377 1.28379 0.84906 0.77579 0.77881 0.78171 1.20259 1.19289 1.19293 1.23496 0.94840 0.90092 1.00572 1.21539 0.91277 0.96753 0.97084 1.21873 1.02914 0.93411 1.01495 1.21797 1.03153 1.01437 0.92390 0.93651 0.92877 0.91029 0.89630 0.90648 0.90951 0.84486 0.74170 0.92317 0.95375 0.86607 0.91052 0.76896 0.91186 0.88005 0.91933 0.89555 0.91718 0.90953 0.89806 0.93803 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.87 71.98 0.71 -1.31 16 2 C -0.09 -1.10 6.22 30.59 0.19 -0.91 16 3 C -0.12 -2.43 5.25 -10.77 -0.06 -2.48 16 4 H 0.08 2.26 7.60 -2.39 -0.02 2.24 16 5 C -0.15 -2.71 9.88 30.62 0.30 -2.41 16 6 C -0.19 -3.52 5.91 -11.54 -0.07 -3.59 16 7 H 0.16 1.73 8.14 -2.38 -0.02 1.71 16 8 C 0.53 15.08 7.61 87.65 0.67 15.75 16 9 O -0.59 -23.64 15.91 -3.04 -0.05 -23.69 16 10 N -0.70 -16.65 4.57 -438.30 -2.00 -18.66 16 11 C 0.15 4.42 3.04 45.89 0.14 4.56 16 12 H 0.07 2.46 7.13 -2.39 -0.02 2.44 16 13 C 0.04 1.45 5.03 86.45 0.43 1.89 16 14 N -0.50 -17.25 5.34 -886.03 -4.73 -21.98 16 15 C 0.05 1.73 5.55 85.56 0.47 2.21 16 16 C 0.43 21.82 7.50 87.66 0.66 22.47 16 17 O -0.62 -36.45 13.24 -3.06 -0.04 -36.49 16 18 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 19 C -0.33 -19.62 9.68 84.04 0.81 -18.81 16 20 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 23 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C 0.04 0.84 5.58 86.45 0.48 1.32 16 28 C -0.07 -1.31 1.03 -51.29 -0.05 -1.36 16 29 C -0.14 -1.65 7.12 71.98 0.51 -1.14 16 30 C -0.13 -2.45 8.24 71.98 0.59 -1.85 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.78 7.88 -2.39 -0.02 0.76 16 35 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.14 1.64 8.03 -2.39 -0.02 1.62 16 38 H 0.42 6.60 5.86 -92.71 -0.54 6.06 16 39 H 0.06 2.97 6.05 -2.38 -0.01 2.95 16 40 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 41 H 0.12 3.65 8.14 -2.38 -0.02 3.63 16 42 H 0.07 2.26 7.88 -2.39 -0.02 2.24 16 43 H 0.40 19.85 7.90 -92.70 -0.73 19.11 16 44 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.10 1.96 7.86 -2.38 -0.02 1.94 16 46 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.67 6.78 -2.39 -0.02 0.66 16 49 H 0.07 0.76 7.91 -2.38 -0.02 0.74 16 50 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -80.44 412.63 -0.22 -80.66 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.36 Total: 41.59 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.27 Total: 14.20 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -8.07 Total: -122.65 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -0.09 Total: -60.17 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -80.44 -0.22 -80.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330228968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.319 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds