Wall clock time and date at job start Tue Mar 31 2020 19:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 H 1.09000 * 115.55296 * 29.33018 * 3 2 1 5 5 C 1.53003 * 117.51898 * 243.62953 * 3 2 1 6 6 C 1.53001 * 117.50223 * 174.99845 * 3 2 1 7 7 H 1.09007 * 117.49734 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50162 * 215.00140 * 6 3 2 9 9 O 1.21278 * 119.99989 * 0.02562 * 8 6 3 10 10 N 1.34773 * 120.00255 * 179.97438 * 8 6 3 11 11 C 1.46502 * 120.00388 * 179.97438 * 10 8 6 12 12 H 1.09003 * 110.28169 * 324.33333 * 11 10 8 13 13 C 1.54377 * 110.31985 * 86.45595 * 11 10 8 14 14 N 1.48561 * 104.59568 * 95.14834 * 13 11 10 15 15 C 1.46895 * 111.00286 * 159.03604 * 14 13 11 16 16 C 1.50706 * 109.47182 * 69.87506 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99401 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00554 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46847 * 89.99945 * 23 21 19 25 25 H 1.48493 * 109.47164 * 210.00376 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00260 * 23 21 19 27 27 C 1.48562 * 104.22040 * 39.47803 * 14 13 11 28 28 C 1.54261 * 110.41285 * 202.14412 * 11 10 8 29 29 C 1.53005 * 110.32186 * 359.95772 * 28 11 10 30 30 C 1.52999 * 110.32208 * 122.05969 * 28 11 10 31 31 H 1.09005 * 109.47411 * 60.00277 * 1 2 3 32 32 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47772 * 299.99858 * 1 2 3 34 34 H 1.08997 * 109.47561 * 239.99650 * 2 1 3 35 35 H 1.09005 * 109.47411 * 119.99723 * 2 1 3 36 36 H 1.09005 * 117.50062 * 145.02753 * 5 3 2 37 37 H 1.08999 * 117.49730 * 0.02562 * 5 3 2 38 38 H 0.97003 * 120.00180 * 0.02562 * 10 8 6 39 39 H 1.09000 * 110.41610 * 336.36884 * 13 11 10 40 40 H 1.09000 * 110.41130 * 213.92597 * 13 11 10 41 41 H 1.09001 * 109.47613 * 309.87852 * 15 14 13 42 42 H 1.08998 * 109.47678 * 189.87748 * 15 14 13 43 43 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 44 44 H 0.97004 * 120.00112 * 179.97438 * 22 21 19 45 45 H 1.09010 * 110.40728 * 79.29618 * 27 14 13 46 46 H 1.09000 * 110.41514 * 201.73687 * 27 14 13 47 47 H 1.08999 * 109.47018 * 60.00178 * 29 28 11 48 48 H 1.08998 * 109.46675 * 179.97438 * 29 28 11 49 49 H 1.08998 * 109.46854 * 299.99757 * 29 28 11 50 50 H 1.09002 * 109.46733 * 59.99921 * 30 28 11 51 51 H 1.08996 * 109.47104 * 179.97438 * 30 28 11 52 52 H 1.08994 * 109.47272 * 300.00620 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9080 -1.2157 6 6 3.5500 1.6579 0.1183 7 1 4.1803 0.7719 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2157 3.6160 1.3926 10 7 5.3423 3.0997 1.0281 11 6 5.8018 4.2704 1.7796 12 1 5.1249 5.1101 1.6221 13 6 5.9014 3.9367 3.2836 14 7 7.3235 3.5599 3.4901 15 6 7.7037 3.6932 4.9027 16 6 7.0144 2.6245 5.7115 17 8 6.2792 1.8297 5.1646 18 7 7.2196 2.5482 7.0413 19 6 6.5930 1.5756 7.7769 20 1 5.9346 0.8709 7.2907 21 6 6.8049 1.4965 9.1478 22 7 7.6064 2.3537 9.7392 23 14 5.9506 0.1719 10.1502 24 1 6.8060 -1.0410 10.1989 25 1 5.7170 0.6686 11.5300 26 1 4.6495 -0.1650 9.5185 27 6 8.0812 4.5161 2.6424 28 6 7.2359 4.6515 1.3578 29 6 7.7464 3.6909 0.2819 30 6 7.2733 6.0921 0.8437 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.7211 2.9434 -1.5338 37 1 3.0091 1.1868 -2.0160 38 1 5.9878 2.4963 0.6279 39 1 5.2469 3.1011 3.5318 40 1 5.6485 4.8103 3.8844 41 1 7.4043 4.6753 5.2686 42 1 8.7837 3.5829 5.0004 43 1 7.8112 3.1808 7.4779 44 1 7.7542 2.2988 10.6964 45 1 8.1694 5.4805 3.1428 46 1 9.0680 4.1169 2.4078 47 1 7.0939 3.7417 -0.5897 48 1 8.7591 3.9728 -0.0059 49 1 7.7496 2.6741 0.6747 50 1 6.9430 6.7680 1.6325 51 1 8.2917 6.3468 0.5503 52 1 6.6119 6.1879 -0.0173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330228969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:37 Heat of formation + Delta-G solvation = -49.077318 kcal Electronic energy + Delta-G solvation = -30119.036938 eV Core-core repulsion = 26118.976668 eV Total energy + Delta-G solvation = -4000.060270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55930 -39.26585 -37.93414 -36.91902 -34.64904 -33.77822 -33.21118 -32.18844 -31.19856 -29.22506 -27.65540 -27.28353 -25.19547 -24.66815 -23.94008 -23.22658 -21.36287 -20.59378 -19.93190 -19.41269 -18.83832 -17.79770 -17.36292 -16.51199 -15.72708 -15.56022 -15.25121 -14.91778 -14.77287 -14.48997 -14.31600 -14.23997 -13.88722 -13.75562 -13.49604 -13.30070 -12.95367 -12.73906 -12.55619 -12.48733 -12.38497 -12.29244 -12.09259 -11.76642 -11.55414 -11.49975 -11.47248 -11.23442 -11.19486 -11.00562 -10.93698 -10.77562 -10.70799 -10.42333 -10.36814 -10.18493 -10.15527 -9.68926 -9.45727 -8.90113 -8.46705 -7.99721 -7.90811 -6.38433 -3.78897 2.56675 3.18951 3.20150 3.28351 3.34699 3.71046 3.94458 4.06268 4.28441 4.33673 4.47685 4.57887 4.62594 4.68736 4.80878 5.00223 5.06093 5.11413 5.17869 5.18923 5.27521 5.27935 5.28965 5.41885 5.44897 5.49589 5.55593 5.58271 5.62135 5.71956 5.75104 5.75586 5.81453 5.82711 5.87395 5.93445 5.94721 5.97149 5.98285 6.04278 6.17239 6.23346 6.30747 6.43608 6.66497 7.13028 7.22822 7.58424 7.62228 8.09827 8.34854 8.65784 9.21950 9.58360 10.10681 10.79558 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.003199 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.953234 B = 8749.835399 C =11573.330377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.116 4.116 4 H 0.118 0.882 5 C -0.151 4.151 6 C -0.189 4.189 7 H 0.123 0.877 8 C 0.543 3.457 9 O -0.544 6.544 10 N -0.710 5.710 11 C 0.151 3.849 12 H 0.092 0.908 13 C 0.029 3.971 14 N -0.482 5.482 15 C 0.034 3.966 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.036 3.964 28 C -0.074 4.074 29 C -0.140 4.140 30 C -0.138 4.138 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.404 0.596 39 H 0.104 0.896 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 3.748 -22.492 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.135 4.135 4 H 0.136 0.864 5 C -0.188 4.188 6 C -0.210 4.210 7 H 0.141 0.859 8 C 0.330 3.670 9 O -0.422 6.422 10 N -0.362 5.362 11 C 0.045 3.955 12 H 0.110 0.890 13 C -0.100 4.100 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.231 3.769 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.092 4.092 28 C -0.075 4.075 29 C -0.198 4.198 30 C -0.195 4.195 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.242 0.758 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.115 3.203 -22.421 22.862 hybrid contribution 0.418 0.348 1.209 1.326 sum -2.697 3.551 -21.212 21.676 Atomic orbital electron populations 1.21734 0.95239 1.01598 1.02083 1.21162 0.96244 0.93680 1.02273 1.22459 0.91556 0.98735 1.00708 0.86449 1.23083 1.02536 1.02871 0.90344 1.22306 0.97899 0.99151 1.01648 0.85873 1.19629 0.82382 0.85394 0.79619 1.90683 1.54103 1.48649 1.48729 1.46108 1.06854 1.28254 1.55031 1.21753 0.94390 0.88200 0.91133 0.88996 1.23595 0.91346 1.01035 0.94042 1.65159 1.03330 1.46288 1.05802 1.22064 1.00977 0.97899 0.88838 1.19701 0.86436 0.87917 0.82885 1.90511 1.40972 1.43925 1.70529 1.41851 1.42585 1.30260 1.05627 1.19688 1.24337 1.09085 0.89519 0.87991 1.25245 0.97333 0.98398 0.97004 1.69614 1.36959 1.36549 1.11392 0.85870 0.79677 0.80252 0.78581 1.20421 1.20949 1.19430 1.23315 0.98035 0.95129 0.92753 1.21530 0.94054 0.96134 0.95800 1.21811 1.00934 0.99568 0.97454 1.21875 1.02075 0.94448 1.01135 0.92684 0.92658 0.92396 0.91755 0.91130 0.88497 0.87974 0.75836 0.87789 0.93799 0.93259 0.89271 0.77555 0.91937 0.93648 0.89839 0.92330 0.92056 0.91392 0.92348 0.92056 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.87 37.15 0.37 -0.86 16 2 C -0.10 -0.86 6.22 -26.74 -0.17 -1.03 16 3 C -0.12 -1.24 5.25 -90.62 -0.48 -1.71 16 4 H 0.12 1.48 7.60 -51.93 -0.39 1.08 16 5 C -0.15 -1.34 9.88 -26.73 -0.26 -1.60 16 6 C -0.19 -2.11 5.91 -91.77 -0.54 -2.65 16 7 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 8 C 0.54 7.84 7.61 -10.99 -0.08 7.76 16 9 O -0.54 -9.88 15.96 5.56 0.09 -9.79 16 10 N -0.71 -9.14 4.59 -52.47 -0.24 -9.38 16 11 C 0.15 2.04 2.99 -66.55 -0.20 1.84 16 12 H 0.09 1.30 7.21 -51.93 -0.37 0.93 16 13 C 0.03 0.49 5.51 -2.18 -0.01 0.48 16 14 N -0.48 -8.01 5.06 -231.41 -1.17 -9.18 16 15 C 0.03 0.62 5.30 -4.98 -0.03 0.59 16 16 C 0.45 10.77 7.58 -10.98 -0.08 10.68 16 17 O -0.58 -15.89 14.42 5.54 0.08 -15.81 16 18 N -0.57 -14.67 5.29 -10.96 -0.06 -14.72 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 23 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 C 0.04 0.44 5.58 -2.18 -0.01 0.43 16 28 C -0.07 -0.78 1.03 -153.13 -0.16 -0.94 16 29 C -0.14 -1.24 7.07 37.16 0.26 -0.98 16 30 C -0.14 -1.19 8.26 37.16 0.31 -0.89 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 7.88 -51.93 -0.41 0.08 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 38 H 0.40 4.42 5.81 -40.82 -0.24 4.18 16 39 H 0.10 2.25 6.82 -51.93 -0.35 1.90 16 40 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 41 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 42 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 43 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.05 0.52 7.69 -51.92 -0.40 0.12 16 46 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 47 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.67 7.01 -51.93 -0.36 0.31 16 50 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 414.68 15.07 6.25 6.25 Total: -1.00 -33.60 414.68 -9.73 -43.33 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -9.06 Total: 14.09 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.33 Total: 3.03 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.75 Total: -57.56 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.17 Total: -25.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.60 -9.73 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330228969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.748 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds