Wall clock time and date at job start Tue Mar 31 2020 19:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 H 1.09000 * 115.55296 * 29.33018 * 3 2 1 5 5 C 1.53003 * 117.51898 * 243.62953 * 3 2 1 6 6 C 1.53001 * 117.50223 * 174.99845 * 3 2 1 7 7 H 1.09007 * 117.49734 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50162 * 215.00140 * 6 3 2 9 9 O 1.21278 * 119.99989 * 0.02562 * 8 6 3 10 10 N 1.34773 * 120.00255 * 179.97438 * 8 6 3 11 11 C 1.46502 * 120.00388 * 179.97438 * 10 8 6 12 12 H 1.09003 * 110.28169 * 324.33333 * 11 10 8 13 13 C 1.54377 * 110.31985 * 86.45595 * 11 10 8 14 14 N 1.48561 * 104.59568 * 95.14834 * 13 11 10 15 15 C 1.46895 * 111.00286 * 159.03604 * 14 13 11 16 16 C 1.50706 * 109.47182 * 69.87506 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99401 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00554 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46847 * 89.99945 * 23 21 19 25 25 H 1.48493 * 109.47164 * 210.00376 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00260 * 23 21 19 27 27 C 1.48562 * 104.22040 * 39.47803 * 14 13 11 28 28 C 1.54261 * 110.41285 * 202.14412 * 11 10 8 29 29 C 1.53005 * 110.32186 * 359.95772 * 28 11 10 30 30 C 1.52999 * 110.32208 * 122.05969 * 28 11 10 31 31 H 1.09005 * 109.47411 * 60.00277 * 1 2 3 32 32 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47772 * 299.99858 * 1 2 3 34 34 H 1.08997 * 109.47561 * 239.99650 * 2 1 3 35 35 H 1.09005 * 109.47411 * 119.99723 * 2 1 3 36 36 H 1.09005 * 117.50062 * 145.02753 * 5 3 2 37 37 H 1.08999 * 117.49730 * 0.02562 * 5 3 2 38 38 H 0.97003 * 120.00180 * 0.02562 * 10 8 6 39 39 H 1.09000 * 110.41610 * 336.36884 * 13 11 10 40 40 H 1.09000 * 110.41130 * 213.92597 * 13 11 10 41 41 H 1.09001 * 109.47613 * 309.87852 * 15 14 13 42 42 H 1.08998 * 109.47678 * 189.87748 * 15 14 13 43 43 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 44 44 H 0.97004 * 120.00112 * 179.97438 * 22 21 19 45 45 H 1.09010 * 110.40728 * 79.29618 * 27 14 13 46 46 H 1.09000 * 110.41514 * 201.73687 * 27 14 13 47 47 H 1.08999 * 109.47018 * 60.00178 * 29 28 11 48 48 H 1.08998 * 109.46675 * 179.97438 * 29 28 11 49 49 H 1.08998 * 109.46854 * 299.99757 * 29 28 11 50 50 H 1.09002 * 109.46733 * 59.99921 * 30 28 11 51 51 H 1.08996 * 109.47104 * 179.97438 * 30 28 11 52 52 H 1.08994 * 109.47272 * 300.00620 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9080 -1.2157 6 6 3.5500 1.6579 0.1183 7 1 4.1803 0.7719 0.1957 8 6 4.0227 2.8618 0.8919 9 8 3.2157 3.6160 1.3926 10 7 5.3423 3.0997 1.0281 11 6 5.8018 4.2704 1.7796 12 1 5.1249 5.1101 1.6221 13 6 5.9014 3.9367 3.2836 14 7 7.3235 3.5599 3.4901 15 6 7.7037 3.6932 4.9027 16 6 7.0144 2.6245 5.7115 17 8 6.2792 1.8297 5.1646 18 7 7.2196 2.5482 7.0413 19 6 6.5930 1.5756 7.7769 20 1 5.9346 0.8709 7.2907 21 6 6.8049 1.4965 9.1478 22 7 7.6064 2.3537 9.7392 23 14 5.9506 0.1719 10.1502 24 1 6.8060 -1.0410 10.1989 25 1 5.7170 0.6686 11.5300 26 1 4.6495 -0.1650 9.5185 27 6 8.0812 4.5161 2.6424 28 6 7.2359 4.6515 1.3578 29 6 7.7464 3.6909 0.2819 30 6 7.2733 6.0921 0.8437 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.7211 2.9434 -1.5338 37 1 3.0091 1.1868 -2.0160 38 1 5.9878 2.4963 0.6279 39 1 5.2469 3.1011 3.5318 40 1 5.6485 4.8103 3.8844 41 1 7.4043 4.6753 5.2686 42 1 8.7837 3.5829 5.0004 43 1 7.8112 3.1808 7.4779 44 1 7.7542 2.2988 10.6964 45 1 8.1694 5.4805 3.1428 46 1 9.0680 4.1169 2.4078 47 1 7.0939 3.7417 -0.5897 48 1 8.7591 3.9728 -0.0059 49 1 7.7496 2.6741 0.6747 50 1 6.9430 6.7680 1.6325 51 1 8.2917 6.3468 0.5503 52 1 6.6119 6.1879 -0.0173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330228969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:36 Heat of formation + Delta-G solvation = -72.947039 kcal Electronic energy + Delta-G solvation = -30120.072007 eV Core-core repulsion = 26118.976668 eV Total energy + Delta-G solvation = -4001.095339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68370 -40.50734 -39.64270 -37.90931 -36.19210 -35.56955 -34.29877 -33.29291 -32.92352 -30.51841 -28.82724 -28.20948 -26.74820 -25.93709 -24.79989 -24.35679 -22.57383 -21.44802 -21.19177 -20.87839 -20.12603 -19.78397 -18.39767 -17.87530 -17.30969 -16.80937 -16.47572 -16.45361 -15.97900 -15.88194 -15.57094 -15.29790 -15.18045 -15.05256 -14.78164 -14.43208 -14.05980 -14.02872 -13.60813 -13.49981 -13.42116 -13.35588 -13.21091 -12.99813 -12.98880 -12.81389 -12.54305 -12.50588 -12.44401 -12.21097 -12.15785 -11.95290 -11.87211 -11.74722 -11.60919 -11.50362 -11.26552 -11.03340 -10.76441 -10.34078 -10.06893 -10.01682 -9.41595 -8.49105 -5.97743 1.35121 1.38307 1.47847 1.51347 2.03369 2.17218 2.26289 2.79480 2.83801 3.16922 3.28026 3.47691 3.58843 3.64400 3.75621 3.86770 3.97673 4.14928 4.20241 4.23040 4.27034 4.28482 4.37674 4.41365 4.46708 4.48118 4.54198 4.61904 4.74029 4.76040 4.78778 4.84261 4.90866 4.92146 4.98565 5.03329 5.06298 5.13801 5.19529 5.21694 5.27186 5.31974 5.37854 5.42604 5.46522 5.51489 5.78734 5.88961 6.05936 6.55972 6.58554 7.10822 7.25113 7.53925 8.10677 8.68565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.003199 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.953234 B = 8749.835399 C =11573.330377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.119 4.119 6 C -0.202 4.202 7 H 0.139 0.861 8 C 0.534 3.466 9 O -0.592 6.592 10 N -0.700 5.700 11 C 0.155 3.845 12 H 0.083 0.917 13 C 0.031 3.969 14 N -0.496 5.496 15 C 0.046 3.954 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.268 1.268 25 H -0.269 1.269 26 H -0.276 1.276 27 C 0.036 3.964 28 C -0.064 4.064 29 C -0.138 4.138 30 C -0.133 4.133 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.414 0.586 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.083 0.917 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 3.806 -24.525 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.148 4.148 4 H 0.107 0.893 5 C -0.157 4.157 6 C -0.223 4.223 7 H 0.156 0.844 8 C 0.322 3.678 9 O -0.473 6.473 10 N -0.353 5.353 11 C 0.048 3.952 12 H 0.101 0.899 13 C -0.098 4.098 14 N -0.220 5.220 15 C -0.086 4.086 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.201 1.201 27 C -0.091 4.091 28 C -0.065 4.065 29 C -0.195 4.195 30 C -0.191 4.191 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.153 0.847 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.102 0.898 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.436 3.272 -24.472 24.731 hybrid contribution -0.096 0.358 1.847 1.884 sum -1.532 3.630 -22.624 22.965 Atomic orbital electron populations 1.21734 0.94819 1.02259 1.01800 1.21159 0.96624 0.92442 1.02713 1.22467 0.90812 0.99301 1.02257 0.89278 1.23193 0.99173 1.03560 0.89728 1.22345 0.98399 0.98198 1.03365 0.84362 1.20301 0.82432 0.85829 0.79233 1.90653 1.55279 1.50551 1.50804 1.46094 1.06766 1.28215 1.54240 1.21698 0.96556 0.88070 0.88837 0.89877 1.23402 0.91229 0.98367 0.96795 1.65087 1.03238 1.48508 1.05213 1.21950 1.01571 0.95998 0.89080 1.20800 0.85489 0.88371 0.82603 1.90488 1.42581 1.45857 1.71244 1.41918 1.42881 1.30148 1.06349 1.19620 1.25710 1.10287 0.90629 0.90680 1.26022 0.97590 1.00292 0.97298 1.69670 1.37163 1.37312 1.12020 0.84951 0.78300 0.77886 0.77342 1.19343 1.19347 1.20095 1.23481 0.98392 0.94760 0.92482 1.21541 0.91117 0.98102 0.95745 1.21811 1.02419 0.98260 0.97012 1.21856 1.03609 0.92531 1.01092 0.91743 0.91471 0.93961 0.89395 0.92509 0.88739 0.84657 0.74553 0.93094 0.94744 0.91628 0.86571 0.77035 0.91261 0.92339 0.87908 0.91166 0.89838 0.92585 0.92811 0.89810 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.87 71.98 0.71 -1.68 16 2 C -0.09 -1.60 6.22 30.59 0.19 -1.41 16 3 C -0.13 -2.79 5.25 -10.79 -0.06 -2.85 16 4 H 0.09 2.43 7.60 -2.39 -0.02 2.41 16 5 C -0.12 -1.91 9.88 30.60 0.30 -1.61 16 6 C -0.20 -4.49 5.91 -11.54 -0.07 -4.56 16 7 H 0.14 2.61 8.14 -2.38 -0.02 2.59 16 8 C 0.53 16.08 7.61 87.66 0.67 16.74 16 9 O -0.59 -23.03 15.96 -3.02 -0.05 -23.08 16 10 N -0.70 -18.31 4.59 -438.30 -2.01 -20.32 16 11 C 0.15 4.22 2.99 45.89 0.14 4.36 16 12 H 0.08 2.43 7.21 -2.39 -0.02 2.41 16 13 C 0.03 1.14 5.51 86.45 0.48 1.61 16 14 N -0.50 -16.37 5.06 -886.05 -4.48 -20.86 16 15 C 0.05 1.65 5.30 85.56 0.45 2.10 16 16 C 0.44 22.00 7.58 87.66 0.66 22.66 16 17 O -0.62 -35.81 14.42 -3.08 -0.04 -35.86 16 18 N -0.58 -30.74 5.29 -306.98 -1.62 -32.36 16 19 C -0.33 -19.62 9.68 84.04 0.81 -18.81 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 23 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 C 0.04 0.80 5.58 86.45 0.48 1.28 16 28 C -0.06 -1.22 1.03 -51.29 -0.05 -1.27 16 29 C -0.14 -2.03 7.07 71.98 0.51 -1.52 16 30 C -0.13 -1.92 8.26 71.98 0.59 -1.33 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.11 7.88 -2.39 -0.02 1.09 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.14 1.31 8.03 -2.39 -0.02 1.29 16 38 H 0.41 8.83 5.81 -92.71 -0.54 8.30 16 39 H 0.05 2.39 6.82 -2.39 -0.02 2.37 16 40 H 0.03 1.26 7.82 -2.39 -0.02 1.25 16 41 H 0.07 2.17 7.88 -2.39 -0.02 2.15 16 42 H 0.12 3.59 8.13 -2.39 -0.02 3.57 16 43 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 44 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.06 1.17 7.69 -2.38 -0.02 1.16 16 46 H 0.10 1.93 7.86 -2.39 -0.02 1.91 16 47 H 0.07 0.89 7.72 -2.39 -0.02 0.87 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 49 H 0.06 0.98 7.01 -2.39 -0.02 0.96 16 50 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.92 414.68 0.03 -77.89 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.35 Total: 45.33 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 6.29 Total: 13.51 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -7.84 Total: -124.11 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.09 Total: -58.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.92 0.03 -77.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330228969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.943 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds