Wall clock time and date at job start Tue Mar 31 2020 19:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 C 1.50702 * 109.47108 * 180.02562 * 3 2 1 5 5 O 1.21289 * 119.99864 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00103 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99859 * 179.97438 * 6 4 3 8 8 C 1.53003 * 115.55859 * 180.10589 * 7 6 4 9 9 C 1.53125 * 109.52298 * 159.18515 * 8 7 6 10 10 C 1.53037 * 109.27715 * 182.50435 * 9 8 7 11 11 N 1.46842 * 109.57735 * 59.08424 * 10 9 8 12 12 C 1.46895 * 111.00398 * 174.19039 * 11 10 9 13 13 C 1.50697 * 109.47581 * 294.21244 * 12 11 10 14 14 O 1.21293 * 119.99459 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00366 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99887 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99575 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99538 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00256 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47542 * 90.00175 * 20 18 16 22 22 H 1.48502 * 109.47105 * 210.00169 * 20 18 16 23 23 H 1.48507 * 109.47203 * 329.99816 * 20 18 16 24 24 C 1.46847 * 111.19954 * 298.29139 * 11 10 9 25 25 C 1.53046 * 109.52134 * 61.73667 * 24 11 10 26 26 C 1.53000 * 117.50040 * 34.42091 * 7 6 4 27 27 C 1.53002 * 60.02940 * 252.49639 * 26 7 6 28 28 H 1.09006 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47412 * 300.00242 * 1 2 3 30 30 H 1.08997 * 109.47413 * 59.99945 * 1 2 3 31 31 H 1.08999 * 109.47198 * 239.99595 * 2 1 3 32 32 H 1.09000 * 109.46976 * 119.99808 * 2 1 3 33 33 H 1.08998 * 109.47118 * 60.00187 * 3 2 1 34 34 H 1.08998 * 109.47534 * 299.99749 * 3 2 1 35 35 H 0.97000 * 120.00496 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.52443 * 279.30912 * 8 7 6 37 37 H 1.09006 * 109.50329 * 302.38424 * 9 8 7 38 38 H 1.09008 * 109.50227 * 62.49987 * 9 8 7 39 39 H 1.09001 * 109.40929 * 299.07058 * 10 9 8 40 40 H 1.09000 * 109.46236 * 179.13273 * 10 9 8 41 41 H 1.09006 * 109.46601 * 54.20864 * 12 11 10 42 42 H 1.08998 * 109.47451 * 174.20840 * 12 11 10 43 43 H 0.97003 * 120.00152 * 0.02562 * 15 13 12 44 44 H 0.96998 * 119.99574 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46225 * 301.72965 * 24 11 10 46 46 H 1.08992 * 109.46708 * 181.75314 * 24 11 10 47 47 H 1.08998 * 109.49863 * 180.87668 * 25 24 11 48 48 H 1.09003 * 109.49935 * 60.77013 * 25 24 11 49 49 H 1.09002 * 117.49833 * 359.97438 * 26 7 6 50 50 H 1.09002 * 117.49953 * 144.99785 * 26 7 6 51 51 H 1.09000 * 117.49996 * 107.50493 * 27 26 7 52 52 H 1.08999 * 117.49664 * 252.51862 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5469 1.4424 -0.0006 5 8 4.1533 0.3920 -0.0006 6 7 4.2208 2.6096 -0.0013 7 6 5.6858 2.6095 -0.0013 8 6 6.3460 3.9898 0.0005 9 6 7.7838 3.8687 0.5131 10 6 8.4182 5.2601 0.5718 11 7 7.6315 6.1224 1.4628 12 6 8.2876 7.4231 1.6510 13 6 9.5877 7.2282 2.3878 14 8 9.9334 6.1151 2.7235 15 7 10.3662 8.2906 2.6736 16 6 11.5487 8.1132 3.3443 17 1 11.8566 7.1221 3.6432 18 6 12.3510 9.2086 3.6395 19 7 13.4847 9.0385 4.2819 20 14 11.8182 10.9228 3.1231 21 1 11.0095 11.5373 4.2064 22 1 13.0189 11.7583 2.8670 23 1 11.0025 10.8358 1.8851 24 6 6.2608 6.2916 0.9640 25 6 5.5615 4.9310 0.9185 26 6 6.3922 1.4896 -0.7679 27 6 6.3930 1.4870 0.7621 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4497 -0.0017 36 1 6.3532 4.3915 -1.0127 37 1 7.7787 3.4297 1.5109 38 1 8.3584 3.2338 -0.1615 39 1 8.4365 5.6924 -0.4287 40 1 9.4369 5.1792 0.9510 41 1 8.4852 7.8744 0.6786 42 1 7.6366 8.0781 2.2300 43 1 10.0895 9.1808 2.4054 44 1 14.0446 9.8033 4.4883 45 1 6.2892 6.7189 -0.0383 46 1 5.7125 6.9597 1.6281 47 1 4.5493 5.0549 0.5336 48 1 5.5203 4.5093 1.9229 49 1 5.7670 0.7526 -1.2718 50 1 7.3271 1.7362 -1.2712 51 1 5.7682 0.7484 1.2645 52 1 7.3282 1.7321 1.2653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333165782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:23 Heat of formation + Delta-G solvation = -43.564123 kcal Electronic energy + Delta-G solvation = -29652.655787 eV Core-core repulsion = 25652.834587 eV Total energy + Delta-G solvation = -3999.821200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.88102 -39.34187 -38.17135 -36.67081 -34.68500 -33.98289 -33.40874 -32.57612 -31.64760 -30.63939 -28.31693 -27.71824 -24.96900 -23.62765 -23.04279 -22.56411 -22.30916 -20.78181 -20.22089 -19.35542 -19.12363 -18.27342 -17.79675 -16.20008 -16.16326 -15.90642 -15.52204 -15.15239 -14.90838 -14.68608 -14.46097 -14.42438 -14.07668 -13.81177 -13.79080 -13.49102 -13.19971 -13.11710 -12.91795 -12.58475 -12.49260 -12.17335 -12.11186 -11.85151 -11.64895 -11.57804 -11.53201 -11.44746 -11.18063 -11.13574 -11.07982 -10.79334 -10.60981 -10.56136 -10.35539 -10.11434 -9.97476 -9.77314 -9.52109 -8.74941 -8.54525 -8.17591 -7.93201 -6.30891 -3.82144 2.33788 2.80721 3.01757 3.06320 3.14581 3.74072 3.82197 3.92000 4.10185 4.30393 4.41983 4.47986 4.59754 4.60341 4.72309 4.84733 4.95021 5.05265 5.08639 5.10666 5.17695 5.20684 5.22948 5.30333 5.35478 5.41439 5.49640 5.52642 5.59227 5.64623 5.66434 5.71774 5.72785 5.75890 5.81786 5.91231 5.93269 5.94417 6.00457 6.02660 6.16686 6.29411 6.37109 6.44735 6.49467 7.20676 7.25160 7.36165 7.59206 7.98613 8.15224 8.60717 8.95787 9.42960 9.84169 10.82278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.001935 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.375620 B =14469.646429 C =14922.465234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.534 6.534 6 N -0.696 5.696 7 C 0.101 3.899 8 C -0.050 4.050 9 C -0.107 4.107 10 C 0.052 3.948 11 N -0.514 5.514 12 C 0.044 3.956 13 C 0.453 3.547 14 O -0.558 6.558 15 N -0.592 5.592 16 C -0.304 4.304 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.056 3.944 25 C -0.107 4.107 26 C -0.177 4.177 27 C -0.176 4.176 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.403 0.597 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.093 0.907 51 H 0.105 0.895 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.095 -8.970 -12.308 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.296 3.704 5 O -0.411 6.411 6 N -0.346 5.346 7 C 0.014 3.986 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.075 4.075 11 N -0.239 5.239 12 C -0.088 4.088 13 C 0.238 3.762 14 O -0.440 6.440 15 N -0.231 5.231 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.073 4.073 25 C -0.145 4.145 26 C -0.215 4.215 27 C -0.214 4.214 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.123 0.877 50 H 0.111 0.889 51 H 0.123 0.877 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.272 -10.616 -11.526 28.891 hybrid contribution -0.509 2.451 -1.149 2.754 sum -24.781 -8.166 -12.676 29.008 Atomic orbital electron populations 1.21797 0.95488 1.02012 1.01765 1.21264 0.95229 0.94580 1.03594 1.21740 0.91724 1.00343 1.04325 1.20788 0.90266 0.83554 0.75760 1.90678 1.69994 1.31524 1.48870 1.45429 1.05643 1.08745 1.74818 1.20771 0.79039 0.91999 1.06832 1.20810 0.95646 0.90880 0.99621 1.21719 0.93195 0.97223 1.02328 1.22275 1.00048 0.92046 0.93168 1.61484 1.01115 1.12559 1.48738 1.21866 0.96170 0.91291 0.99459 1.19656 0.85870 0.85508 0.85150 1.90528 1.73717 1.23782 1.55925 1.42221 1.20675 1.07318 1.52922 1.19429 0.94532 0.97810 1.31500 0.86264 1.25035 0.95694 0.98211 0.97227 1.69625 1.11598 1.31408 1.39537 0.86676 0.78974 0.84753 0.78988 1.19634 1.20224 1.19570 1.22085 0.90231 0.96879 0.98059 1.21564 0.97189 0.94931 1.00798 1.23394 1.01704 1.00961 0.95478 1.23578 1.02393 1.00552 0.94905 0.92381 0.92648 0.92732 0.91280 0.91185 0.88908 0.89047 0.76176 0.90825 0.89959 0.91409 0.96053 0.87583 0.93491 0.89280 0.79766 0.91644 0.95286 0.90726 0.92218 0.90388 0.87697 0.88901 0.87703 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.15 0.37 -0.39 16 2 C -0.11 -0.74 5.22 -26.74 -0.14 -0.88 16 3 C -0.14 -0.84 5.70 -27.88 -0.16 -1.00 16 4 C 0.51 4.78 7.53 -10.99 -0.08 4.70 16 5 O -0.53 -6.87 11.46 5.55 0.06 -6.81 16 6 N -0.70 -5.87 5.39 -47.57 -0.26 -6.12 16 7 C 0.10 1.04 2.99 -131.78 -0.39 0.64 16 8 C -0.05 -0.51 2.55 -90.50 -0.23 -0.74 16 9 C -0.11 -1.34 4.08 -26.65 -0.11 -1.45 16 10 C 0.05 0.79 5.10 -3.84 -0.02 0.77 16 11 N -0.51 -7.85 4.40 -236.12 -1.04 -8.89 16 12 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 13 C 0.45 10.08 7.46 -10.99 -0.08 9.99 16 14 O -0.56 -14.55 13.90 5.55 0.08 -14.48 16 15 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 16 C -0.30 -8.52 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 19 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 20 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 24 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 25 C -0.11 -1.02 4.94 -26.65 -0.13 -1.15 16 26 C -0.18 -2.00 9.08 -26.73 -0.24 -2.25 16 27 C -0.18 -2.11 8.85 -26.69 -0.24 -2.35 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 2.36 6.91 -40.82 -0.28 2.08 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.17 6.58 -51.93 -0.34 0.83 16 38 H 0.07 0.79 7.10 -51.92 -0.37 0.42 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.11 2.02 5.78 -51.93 -0.30 1.72 16 41 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 42 H 0.09 1.27 7.99 -51.93 -0.41 0.85 16 43 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 47 H 0.06 0.40 6.61 -51.93 -0.34 0.06 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.10 1.33 6.38 -51.93 -0.33 1.00 16 50 H 0.09 0.97 7.33 -51.93 -0.38 0.59 16 51 H 0.10 1.42 6.37 -51.93 -0.33 1.09 16 52 H 0.10 1.25 5.84 -51.93 -0.30 0.95 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -33.37 396.62 -9.60 -42.97 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -8.67 Total: 12.17 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.75 Total: -0.47 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.58 Total: -53.87 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.14 Total: -21.29 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.37 -9.60 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333165782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.596 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds