Wall clock time and date at job start Tue Mar 31 2020 19:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 C 1.50702 * 109.47108 * 180.02562 * 3 2 1 5 5 O 1.21289 * 119.99864 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00103 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99859 * 179.97438 * 6 4 3 8 8 C 1.53003 * 115.55859 * 180.10589 * 7 6 4 9 9 C 1.53125 * 109.52298 * 159.18515 * 8 7 6 10 10 C 1.53037 * 109.27715 * 182.50435 * 9 8 7 11 11 N 1.46842 * 109.57735 * 59.08424 * 10 9 8 12 12 C 1.46895 * 111.00398 * 174.19039 * 11 10 9 13 13 C 1.50697 * 109.47581 * 294.21244 * 12 11 10 14 14 O 1.21293 * 119.99459 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00366 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99887 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99575 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99538 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00256 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47542 * 90.00175 * 20 18 16 22 22 H 1.48502 * 109.47105 * 210.00169 * 20 18 16 23 23 H 1.48507 * 109.47203 * 329.99816 * 20 18 16 24 24 C 1.46847 * 111.19954 * 298.29139 * 11 10 9 25 25 C 1.53046 * 109.52134 * 61.73667 * 24 11 10 26 26 C 1.53000 * 117.50040 * 34.42091 * 7 6 4 27 27 C 1.53002 * 60.02940 * 252.49639 * 26 7 6 28 28 H 1.09006 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47412 * 300.00242 * 1 2 3 30 30 H 1.08997 * 109.47413 * 59.99945 * 1 2 3 31 31 H 1.08999 * 109.47198 * 239.99595 * 2 1 3 32 32 H 1.09000 * 109.46976 * 119.99808 * 2 1 3 33 33 H 1.08998 * 109.47118 * 60.00187 * 3 2 1 34 34 H 1.08998 * 109.47534 * 299.99749 * 3 2 1 35 35 H 0.97000 * 120.00496 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.52443 * 279.30912 * 8 7 6 37 37 H 1.09006 * 109.50329 * 302.38424 * 9 8 7 38 38 H 1.09008 * 109.50227 * 62.49987 * 9 8 7 39 39 H 1.09001 * 109.40929 * 299.07058 * 10 9 8 40 40 H 1.09000 * 109.46236 * 179.13273 * 10 9 8 41 41 H 1.09006 * 109.46601 * 54.20864 * 12 11 10 42 42 H 1.08998 * 109.47451 * 174.20840 * 12 11 10 43 43 H 0.97003 * 120.00152 * 0.02562 * 15 13 12 44 44 H 0.96998 * 119.99574 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46225 * 301.72965 * 24 11 10 46 46 H 1.08992 * 109.46708 * 181.75314 * 24 11 10 47 47 H 1.08998 * 109.49863 * 180.87668 * 25 24 11 48 48 H 1.09003 * 109.49935 * 60.77013 * 25 24 11 49 49 H 1.09002 * 117.49833 * 359.97438 * 26 7 6 50 50 H 1.09002 * 117.49953 * 144.99785 * 26 7 6 51 51 H 1.09000 * 117.49996 * 107.50493 * 27 26 7 52 52 H 1.08999 * 117.49664 * 252.51862 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5469 1.4424 -0.0006 5 8 4.1533 0.3920 -0.0006 6 7 4.2208 2.6096 -0.0013 7 6 5.6858 2.6095 -0.0013 8 6 6.3460 3.9898 0.0005 9 6 7.7838 3.8687 0.5131 10 6 8.4182 5.2601 0.5718 11 7 7.6315 6.1224 1.4628 12 6 8.2876 7.4231 1.6510 13 6 9.5877 7.2282 2.3878 14 8 9.9334 6.1151 2.7235 15 7 10.3662 8.2906 2.6736 16 6 11.5487 8.1132 3.3443 17 1 11.8566 7.1221 3.6432 18 6 12.3510 9.2086 3.6395 19 7 13.4847 9.0385 4.2819 20 14 11.8182 10.9228 3.1231 21 1 11.0095 11.5373 4.2064 22 1 13.0189 11.7583 2.8670 23 1 11.0025 10.8358 1.8851 24 6 6.2608 6.2916 0.9640 25 6 5.5615 4.9310 0.9185 26 6 6.3922 1.4896 -0.7679 27 6 6.3930 1.4870 0.7621 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4497 -0.0017 36 1 6.3532 4.3915 -1.0127 37 1 7.7787 3.4297 1.5109 38 1 8.3584 3.2338 -0.1615 39 1 8.4365 5.6924 -0.4287 40 1 9.4369 5.1792 0.9510 41 1 8.4852 7.8744 0.6786 42 1 7.6366 8.0781 2.2300 43 1 10.0895 9.1808 2.4054 44 1 14.0446 9.8033 4.4883 45 1 6.2892 6.7189 -0.0383 46 1 5.7125 6.9597 1.6281 47 1 4.5493 5.0549 0.5336 48 1 5.5203 4.5093 1.9229 49 1 5.7670 0.7526 -1.2718 50 1 7.3271 1.7362 -1.2712 51 1 5.7682 0.7484 1.2645 52 1 7.3282 1.7321 1.2653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333165782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:22 Heat of formation + Delta-G solvation = -68.390601 kcal Electronic energy + Delta-G solvation = -29653.732344 eV Core-core repulsion = 25652.834587 eV Total energy + Delta-G solvation = -4000.897757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72050 -40.62982 -39.51558 -37.73974 -35.94673 -35.25567 -34.22235 -33.79818 -33.52780 -31.60573 -29.18767 -28.74979 -26.54766 -24.82097 -24.10543 -23.48222 -23.02082 -21.53867 -21.25640 -21.03186 -20.16874 -20.00151 -18.56317 -17.71436 -16.87658 -16.86514 -16.74097 -16.51724 -16.32499 -15.61126 -15.47769 -15.36723 -15.20007 -15.06179 -14.88907 -14.67206 -14.32690 -14.25214 -14.01724 -13.88146 -13.65319 -13.19409 -13.02427 -12.82645 -12.68119 -12.65172 -12.45227 -12.40087 -12.39020 -12.09061 -12.00875 -11.97315 -11.77268 -11.59785 -11.58602 -11.45254 -11.28560 -11.00085 -10.58354 -10.28726 -10.20062 -9.58465 -9.10819 -8.39575 -6.00091 1.30693 1.36795 1.45378 1.61898 1.99681 2.10169 2.24414 2.68090 2.93075 3.16346 3.26504 3.53615 3.61231 3.79564 3.92913 3.99403 4.10048 4.12735 4.16591 4.22483 4.29984 4.35691 4.43448 4.45963 4.56261 4.60627 4.64852 4.67623 4.72257 4.77143 4.78617 4.81227 4.90006 4.93917 5.00167 5.05307 5.09138 5.22619 5.25203 5.27723 5.28662 5.32761 5.46345 5.48292 5.55825 5.61523 5.94091 6.10706 6.33543 6.60844 6.62689 6.91389 7.31446 7.43071 8.01456 8.78274 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.001935 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.375620 B =14469.646429 C =14922.465234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.132 4.132 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.686 5.686 7 C 0.120 3.880 8 C -0.040 4.040 9 C -0.101 4.101 10 C 0.056 3.944 11 N -0.540 5.540 12 C 0.056 3.944 13 C 0.450 3.550 14 O -0.605 6.605 15 N -0.593 5.593 16 C -0.327 4.327 17 H 0.053 0.947 18 C -0.017 4.017 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.230 1.230 24 C 0.055 3.945 25 C -0.103 4.103 26 C -0.177 4.177 27 C -0.193 4.193 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.419 0.581 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.085 0.915 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.383 -5.510 -14.713 33.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.172 4.172 4 C 0.291 3.709 5 O -0.455 6.455 6 N -0.337 5.337 7 C 0.032 3.968 8 C -0.059 4.059 9 C -0.139 4.139 10 C -0.072 4.072 11 N -0.265 5.265 12 C -0.076 4.076 13 C 0.238 3.762 14 O -0.489 6.489 15 N -0.236 5.236 16 C -0.456 4.456 17 H 0.071 0.929 18 C -0.215 4.215 19 N -0.578 5.578 20 Si 0.786 3.214 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.154 1.154 24 C -0.072 4.072 25 C -0.141 4.141 26 C -0.215 4.215 27 C -0.231 4.231 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.077 0.923 49 H 0.110 0.890 50 H 0.119 0.881 51 H 0.104 0.896 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.618 -7.141 -13.949 32.628 hybrid contribution 0.867 1.167 -0.347 1.495 sum -27.751 -5.974 -14.296 31.783 Atomic orbital electron populations 1.21758 0.93757 1.02255 1.02771 1.21238 0.96648 0.95061 1.01815 1.21766 0.88706 1.00067 1.06621 1.21502 0.91768 0.83012 0.74630 1.90676 1.71104 1.33087 1.50610 1.45341 1.04641 1.09495 1.74255 1.20656 0.80242 0.91487 1.04416 1.20730 0.93669 0.90817 1.00692 1.21614 0.95307 0.95744 1.01238 1.22090 0.97859 0.93626 0.93600 1.61427 1.03025 1.12102 1.49962 1.21803 0.92866 0.92668 1.00215 1.21001 0.87298 0.84307 0.83630 1.90524 1.75186 1.25880 1.57327 1.42046 1.19561 1.08756 1.53199 1.18990 0.97228 0.95693 1.33669 0.92864 1.26126 0.95079 1.03856 0.96441 1.69816 1.13396 1.33492 1.41045 0.85350 0.79156 0.76508 0.80387 1.18145 1.20185 1.15354 1.22229 0.87443 0.98050 0.99445 1.21584 0.98947 0.93797 0.99767 1.23330 1.02112 1.01455 0.94609 1.23440 1.02362 1.01862 0.95414 0.92646 0.91745 0.91513 0.92939 0.93271 0.86679 0.86322 0.74191 0.88869 0.92500 0.91125 0.94285 0.92612 0.90573 0.86039 0.77545 0.91243 0.93120 0.89023 0.88170 0.92262 0.89047 0.88148 0.89633 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.11 -1.38 5.22 30.59 0.16 -1.22 16 3 C -0.13 -1.22 5.70 29.85 0.17 -1.05 16 4 C 0.50 8.72 7.53 87.66 0.66 9.38 16 5 O -0.58 -15.10 11.46 -3.06 -0.04 -15.14 16 6 N -0.69 -9.77 5.39 -422.80 -2.28 -12.05 16 7 C 0.12 2.30 2.99 3.63 0.01 2.31 16 8 C -0.04 -0.71 2.55 -10.71 -0.03 -0.73 16 9 C -0.10 -2.52 4.08 30.65 0.12 -2.40 16 10 C 0.06 1.67 5.10 86.33 0.44 2.11 16 11 N -0.54 -15.29 4.40 -900.95 -3.96 -19.25 16 12 C 0.06 1.64 5.45 85.56 0.47 2.11 16 13 C 0.45 20.13 7.46 87.66 0.65 20.78 16 14 O -0.61 -33.38 13.90 -3.07 -0.04 -33.42 16 15 N -0.59 -27.81 5.09 -306.99 -1.56 -29.37 16 16 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 17 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 18 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 19 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 20 Si 0.97 38.59 27.74 68.60 1.90 40.49 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 24 C 0.06 0.97 5.46 86.33 0.47 1.45 16 25 C -0.10 -1.56 4.94 30.65 0.15 -1.41 16 26 C -0.18 -4.00 9.08 30.60 0.28 -3.72 16 27 C -0.19 -4.83 8.85 30.62 0.27 -4.56 16 28 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.42 3.04 6.91 -92.71 -0.64 2.40 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.71 6.58 -2.38 -0.02 1.69 16 38 H 0.07 1.68 7.10 -2.38 -0.02 1.66 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 2.23 5.78 -2.39 -0.01 2.22 16 41 H 0.08 1.87 8.12 -2.38 -0.02 1.85 16 42 H 0.12 2.86 7.99 -2.39 -0.02 2.84 16 43 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 44 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 1.36 8.01 -2.39 -0.02 1.34 16 47 H 0.10 0.75 6.61 -2.39 -0.02 0.74 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.09 2.36 6.38 -2.39 -0.02 2.35 16 50 H 0.10 2.08 7.33 -2.39 -0.02 2.06 16 51 H 0.09 2.49 6.37 -2.39 -0.02 2.48 16 52 H 0.09 2.50 5.84 -2.39 -0.01 2.48 16 Total: -1.00 -82.67 396.62 -0.11 -82.78 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.30 Total: 38.66 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.87 Total: 3.80 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.50 Total: -117.17 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.08 Total: -48.56 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -82.67 -0.11 -82.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333165782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.393 kcal (2) G-P(sol) polarization free energy of solvation -82.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds