Wall clock time and date at job start Tue Mar 31 2020 19:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47343 * 2 1 4 4 C 1.50701 * 109.47390 * 119.99893 * 2 1 3 5 5 O 1.21284 * 120.00232 * 265.00158 * 4 2 1 6 6 N 1.34777 * 119.99551 * 84.99760 * 4 2 1 7 7 C 1.46510 * 119.99531 * 179.72746 * 6 4 2 8 8 C 1.50701 * 109.46649 * 180.27838 * 7 6 4 9 9 C 1.29447 * 117.69678 * 95.00465 * 8 7 6 10 10 C 1.50319 * 123.65536 * 180.85384 * 9 8 7 11 11 N 1.47013 * 109.16349 * 349.02306 * 10 9 8 12 12 C 1.36943 * 121.37171 * 222.97160 * 11 10 9 13 13 H 1.07991 * 120.00016 * 155.96805 * 12 11 10 14 14 C 1.38813 * 119.99580 * 335.96044 * 12 11 10 15 15 N 1.31618 * 120.00505 * 344.52493 * 14 12 11 16 16 Si 1.86800 * 119.99584 * 164.52960 * 14 12 11 17 17 H 1.48499 * 109.47360 * 59.99547 * 16 14 12 18 18 H 1.48505 * 109.47373 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47003 * 300.00042 * 16 14 12 20 20 C 1.47333 * 117.25318 * 42.94171 * 11 10 9 21 21 C 1.49973 * 117.69227 * 274.73406 * 8 7 6 22 22 N 1.46897 * 109.47108 * 239.99843 * 2 1 3 23 23 C 1.47013 * 111.00328 * 183.63168 * 22 2 1 24 24 C 1.53096 * 109.26421 * 177.60778 * 23 22 2 25 25 O 1.43024 * 109.25368 * 56.85267 * 24 23 22 26 26 C 1.43020 * 113.73603 * 301.33028 * 25 24 23 27 27 C 1.47019 * 111.00060 * 60.00271 * 22 2 1 28 28 H 1.09000 * 109.47604 * 300.00065 * 1 2 3 29 29 H 1.08996 * 109.47410 * 59.99842 * 1 2 3 30 30 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47227 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47091 * 300.00512 * 3 2 1 33 33 H 1.09000 * 109.46824 * 59.99457 * 3 2 1 34 34 H 0.96998 * 120.00331 * 0.02562 * 6 4 2 35 35 H 1.08993 * 109.47052 * 300.27484 * 7 6 4 36 36 H 1.08998 * 109.47190 * 60.27998 * 7 6 4 37 37 H 1.07999 * 118.17423 * 0.87250 * 9 8 7 38 38 H 1.09003 * 109.52654 * 108.92214 * 10 9 8 39 39 H 1.08993 * 109.52762 * 229.11080 * 10 9 8 40 40 H 0.97001 * 119.99949 * 179.97438 * 15 14 12 41 41 H 1.08999 * 109.77642 * 57.81197 * 20 11 10 42 42 H 1.08993 * 109.78173 * 178.62304 * 20 11 10 43 43 H 1.08998 * 109.31837 * 281.29732 * 21 8 7 44 44 H 1.08999 * 109.31348 * 40.72281 * 21 8 7 45 45 H 1.08997 * 109.50851 * 297.55125 * 23 22 2 46 46 H 1.09003 * 109.50455 * 57.67436 * 23 22 2 47 47 H 1.09000 * 109.50352 * 296.92183 * 24 23 22 48 48 H 1.08998 * 109.54457 * 176.80429 * 24 23 22 49 49 H 1.09003 * 109.50566 * 298.73624 * 26 25 24 50 50 H 1.08997 * 109.53876 * 178.63374 * 26 25 24 51 51 H 1.09007 * 109.50450 * 302.32874 * 27 22 2 52 52 H 1.08998 * 109.50521 * 62.40792 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3208 -0.0748 2.2224 6 7 2.1610 -2.0520 1.2286 7 6 2.6551 -2.7421 2.4228 8 6 2.7110 -4.2248 2.1591 9 6 3.8388 -4.7238 1.7658 10 6 4.0399 -6.1790 1.4471 11 7 2.8665 -6.9392 1.9017 12 6 3.0010 -8.1387 2.5485 13 1 2.2162 -8.4911 3.2013 14 6 4.1460 -8.9017 2.3648 15 7 4.9555 -8.6424 1.3599 16 14 4.5378 -10.2967 3.5437 17 1 3.4356 -11.2915 3.5173 18 1 5.8059 -10.9510 3.1325 19 1 4.6837 -9.7560 4.9192 20 6 1.5400 -6.3570 1.6332 21 6 1.4577 -5.0191 2.3768 22 7 2.0196 -0.6925 -1.1994 23 6 3.4866 -0.7879 -1.1908 24 6 3.9494 -1.5667 -2.4249 25 8 3.4558 -0.9216 -3.6021 26 6 2.0304 -0.8122 -3.6439 27 6 1.5483 -0.0259 -2.4220 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9306 -2.5602 0.4352 35 1 3.6535 -2.3784 2.6656 36 1 1.9839 -2.5468 3.2591 37 1 4.6823 -4.0576 1.6609 38 1 4.1596 -6.3032 0.3708 39 1 4.9307 -6.5441 1.9581 40 1 5.7558 -9.1754 1.2318 41 1 1.4178 -6.1960 0.5621 42 1 0.7621 -7.0280 1.9971 43 1 1.3278 -5.2027 3.4434 44 1 0.6033 -4.4537 2.0046 45 1 3.9166 0.2135 -1.2098 46 1 3.8123 -1.3073 -0.2895 47 1 3.5632 -2.5849 -2.3787 48 1 5.0387 -1.5914 -2.4532 49 1 1.5884 -1.8086 -3.6332 50 1 1.7313 -0.2912 -4.5534 51 1 0.4588 0.0110 -2.4196 52 1 1.9466 0.9880 -2.4604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333419062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:16 Heat of formation + Delta-G solvation = -28.547227 kcal Electronic energy + Delta-G solvation = -31128.217110 eV Core-core repulsion = 27129.047091 eV Total energy + Delta-G solvation = -3999.170019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.97099 -39.16506 -37.84712 -36.62578 -34.98276 -32.87208 -32.25028 -31.49561 -30.84463 -29.73316 -27.73599 -27.24575 -26.69029 -24.81784 -23.94370 -22.86425 -22.51460 -21.09113 -20.82374 -19.42837 -17.96531 -17.58080 -16.59809 -16.21310 -15.94127 -15.73693 -15.40143 -15.30184 -15.12607 -14.77605 -14.73817 -14.36417 -14.22623 -13.86059 -13.67302 -13.43095 -13.25609 -12.82297 -12.74479 -12.43351 -12.28232 -12.23959 -12.16370 -12.04858 -11.74298 -11.60425 -11.55956 -11.37090 -11.33778 -10.92067 -10.74561 -10.73833 -10.42052 -10.34468 -10.00314 -9.84922 -9.78770 -9.59911 -8.92349 -8.76022 -8.69360 -8.07069 -6.76634 -5.81726 -3.20528 2.54713 2.58309 3.31492 3.37802 3.43564 3.44891 3.49389 3.64014 4.38081 4.47886 4.54566 4.62992 4.72879 4.79965 4.84284 4.95844 5.02283 5.14216 5.19324 5.27397 5.32752 5.34362 5.37870 5.39848 5.43072 5.47984 5.53902 5.56526 5.62892 5.70597 5.80886 5.81787 5.91855 5.93098 6.05992 6.15267 6.31717 6.42878 6.48240 6.54358 6.57508 6.71781 6.85473 6.89586 7.14545 7.23663 7.30977 7.63398 7.70903 7.80324 8.25048 8.36048 9.17548 9.80256 10.38175 11.28645 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.002877 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.436723 B = 9730.056797 C =10642.628049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 C -0.167 4.167 4 C 0.524 3.476 5 O -0.547 6.547 6 N -0.708 5.708 7 C 0.155 3.845 8 C -0.164 4.164 9 C -0.124 4.124 10 C 0.195 3.805 11 N -0.595 5.595 12 C -0.248 4.248 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.909 5.909 16 Si 0.905 3.095 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.144 3.856 21 C -0.089 4.089 22 N -0.523 5.523 23 C 0.006 3.994 24 C 0.065 3.935 25 O -0.386 6.386 26 C 0.063 3.937 27 C 0.013 3.987 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.254 0.746 41 H 0.024 0.976 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.091 0.909 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 19.073 -8.329 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.308 3.692 5 O -0.424 6.424 6 N -0.359 5.359 7 C 0.032 3.968 8 C -0.165 4.165 9 C -0.145 4.145 10 C 0.070 3.930 11 N -0.318 5.318 12 C -0.377 4.377 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.555 5.555 16 Si 0.735 3.265 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.018 3.982 21 C -0.128 4.128 22 N -0.249 5.249 23 C -0.122 4.122 24 C -0.012 4.012 25 O -0.304 6.304 26 C -0.014 4.014 27 C -0.115 4.115 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.080 0.920 50 H 0.115 0.885 51 H 0.109 0.891 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.038 18.971 -7.768 21.675 hybrid contribution 0.402 -0.163 0.536 0.689 sum -6.636 18.808 -7.233 21.215 Atomic orbital electron populations 1.21847 0.91284 1.03528 1.02826 1.21312 0.97282 0.93012 0.88652 1.22252 1.01956 0.95309 1.03040 1.20226 0.77563 0.82677 0.88695 1.90702 1.50364 1.66413 1.34947 1.46257 1.65724 1.06508 1.17449 1.20482 0.99139 0.90010 0.87167 1.20475 0.97067 0.92724 1.06216 1.23255 0.95832 1.00258 0.95162 1.19745 0.92027 0.83528 0.97689 1.44114 0.99270 1.20666 1.67751 1.19144 1.04129 0.95249 1.19168 0.91420 1.24977 0.99447 0.98057 0.97322 1.69995 1.15077 1.41964 1.28418 0.86329 0.77468 0.81888 0.80846 1.20929 1.21619 1.21079 1.20980 0.89164 0.92112 0.95955 1.20779 0.93784 0.97217 1.01061 1.62461 1.10210 1.50975 1.01270 1.22980 0.87619 1.00801 1.00759 1.22674 0.99531 0.95880 0.83080 1.87991 1.20998 1.80106 1.41314 1.22664 0.81474 1.00214 0.97021 1.22905 1.01543 0.96974 0.90036 0.91292 0.91255 0.90998 0.92065 0.91692 0.90631 0.75381 0.91842 0.91696 0.88933 0.94128 0.88954 0.93553 0.95839 0.92523 0.91793 0.92931 0.93325 0.89033 0.91623 0.88233 0.91971 0.88523 0.89058 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.23 37.16 0.31 -0.83 16 2 C 0.09 0.90 0.64 -132.76 -0.08 0.81 16 3 C -0.17 -1.60 7.31 37.16 0.27 -1.33 16 4 C 0.52 6.91 5.41 -10.99 -0.06 6.85 16 5 O -0.55 -9.13 16.10 5.55 0.09 -9.04 16 6 N -0.71 -9.13 4.44 -61.47 -0.27 -9.40 16 7 C 0.15 2.28 5.66 -5.19 -0.03 2.25 16 8 C -0.16 -2.74 5.22 -100.99 -0.53 -3.26 16 9 C -0.12 -2.29 9.47 -35.78 -0.34 -2.63 16 10 C 0.20 4.49 5.23 -5.10 -0.03 4.46 16 11 N -0.59 -14.54 3.01 -173.57 -0.52 -15.06 16 12 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 13 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 14 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16 15 N -0.91 -25.76 11.08 55.49 0.61 -25.15 16 16 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.14 2.91 6.59 -3.44 -0.02 2.89 16 21 C -0.09 -1.52 5.95 -28.09 -0.17 -1.69 16 22 N -0.52 -4.82 3.83 -220.00 -0.84 -5.66 16 23 C 0.01 0.06 4.86 -3.71 -0.02 0.05 16 24 C 0.07 0.65 7.01 37.21 0.26 0.91 16 25 O -0.39 -4.10 10.83 -35.23 -0.38 -4.48 16 26 C 0.06 0.51 7.01 37.20 0.26 0.77 16 27 C 0.01 0.10 4.87 -3.71 -0.02 0.08 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 32 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 33 H 0.07 0.78 7.87 -51.93 -0.41 0.38 16 34 H 0.41 5.04 7.78 -40.82 -0.32 4.73 16 35 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 36 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.50 6.52 -51.93 -0.34 0.16 16 46 H 0.09 1.04 6.22 -51.93 -0.32 0.71 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.09 0.56 6.19 -51.92 -0.32 0.24 16 52 H 0.05 0.38 6.44 -51.93 -0.33 0.05 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -30.51 394.29 -9.63 -40.14 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.80 Total: 3.83 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.43 Total: 2.41 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -1.02 Total: -55.27 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.29 Total: -13.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.51 -9.63 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333419062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.591 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds