Wall clock time and date at job start Tue Mar 31 2020 19:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47321 * 2 1 4 4 C 1.50697 * 109.47534 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99841 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00374 * 180.02562 * 4 3 2 7 7 C 1.47865 * 126.92392 * 359.96823 * 6 4 3 8 8 C 1.56022 * 105.11112 * 181.91940 * 7 6 4 9 9 H 1.08992 * 116.25862 * 159.69781 * 8 7 6 10 10 C 1.57085 * 100.41178 * 33.04910 * 8 7 6 11 11 C 1.49280 * 126.92802 * 179.97438 * 6 4 3 12 12 H 1.08999 * 116.12548 * 16.86933 * 11 6 4 13 13 C 1.55965 * 104.86944 * 246.63104 * 11 6 4 14 14 N 1.48283 * 105.09369 * 289.94059 * 13 11 6 15 15 C 1.46894 * 111.00129 * 121.26744 * 14 13 11 16 16 C 1.50707 * 109.47170 * 184.12989 * 15 14 13 17 17 O 1.21279 * 119.99508 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99986 * 179.97438 * 16 15 14 19 19 C 1.46504 * 120.00143 * 0.02562 * 18 16 15 20 20 C 1.52999 * 109.46735 * 269.99791 * 19 18 16 21 21 C 1.46500 * 120.00106 * 180.02562 * 18 16 15 22 22 C 1.50708 * 109.47039 * 270.00300 * 21 18 16 23 23 H 1.07998 * 119.99545 * 359.97438 * 22 21 18 24 24 C 1.37872 * 120.00142 * 179.72261 * 22 21 18 25 25 N 1.31516 * 120.00008 * 0.27714 * 24 22 21 26 26 Si 1.86796 * 120.00093 * 180.27311 * 24 22 21 27 27 H 1.48500 * 109.47368 * 59.99893 * 26 24 22 28 28 H 1.48503 * 109.47021 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47132 * 299.99814 * 26 24 22 30 30 H 1.09007 * 109.47262 * 300.00029 * 1 2 3 31 31 H 1.08994 * 109.47645 * 59.99789 * 1 2 3 32 32 H 1.09004 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47262 * 239.99971 * 2 1 3 34 34 H 1.09008 * 109.47692 * 120.00042 * 2 1 3 35 35 H 1.08998 * 109.47576 * 59.99810 * 3 2 1 36 36 H 1.09007 * 109.46786 * 300.00049 * 3 2 1 37 37 H 1.08994 * 110.31366 * 63.01084 * 7 6 4 38 38 H 1.09001 * 110.39537 * 300.86801 * 7 6 4 39 39 H 1.08999 * 112.35781 * 64.12717 * 10 8 7 40 40 H 1.09001 * 112.35917 * 191.53759 * 10 8 7 41 41 H 1.08997 * 111.38853 * 170.46840 * 13 11 6 42 42 H 1.09002 * 109.22891 * 48.29781 * 13 11 6 43 43 H 1.08998 * 109.47373 * 64.13500 * 15 14 13 44 44 H 1.08994 * 109.47497 * 304.12881 * 15 14 13 45 45 H 1.08992 * 109.47199 * 29.99685 * 19 18 16 46 46 H 1.08998 * 109.47268 * 149.99935 * 19 18 16 47 47 H 1.09002 * 109.47695 * 299.99753 * 20 19 18 48 48 H 1.08998 * 109.47125 * 60.00056 * 20 19 18 49 49 H 1.09008 * 109.46960 * 180.02562 * 20 19 18 50 50 H 1.08997 * 109.47658 * 150.00156 * 21 18 16 51 51 H 1.08996 * 109.47243 * 29.99651 * 21 18 16 52 52 H 0.97003 * 120.00266 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.6413 3.9701 0.0002 8 6 4.8669 4.9343 -0.0499 9 1 4.6687 5.9486 -0.3961 10 6 5.8644 4.0810 -0.9127 11 6 5.7028 2.7898 -0.0002 12 1 6.2921 1.9181 -0.2845 13 6 6.0280 3.4311 1.3838 14 7 5.4851 4.8088 1.3081 15 6 4.4899 5.0412 2.3632 16 6 3.8882 6.4125 2.1932 17 8 4.2524 7.1256 1.2823 18 7 2.9449 6.8458 3.0526 19 6 2.5046 5.9840 4.1525 20 6 1.3244 5.1279 3.6886 21 6 2.3596 8.1785 2.8870 22 6 3.1705 9.1834 3.6642 23 1 4.0350 8.8613 4.2257 24 6 2.8117 10.5146 3.6542 25 7 1.7586 10.9067 2.9708 26 14 3.8212 11.7612 4.6113 27 1 5.2169 11.7620 4.1043 28 1 3.2307 13.1129 4.4396 29 1 3.8180 11.3996 6.0517 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.0662 4.1361 0.9110 38 1 3.0103 4.1144 -0.8768 39 1 5.4986 3.9145 -1.9259 40 1 6.8745 4.4907 -0.9051 41 1 7.1021 3.4569 1.5673 42 1 5.5226 2.8676 2.1682 43 1 4.9720 4.9745 3.3385 44 1 3.7044 4.2888 2.2940 45 1 3.3261 5.3357 4.4573 46 1 2.1963 6.6010 4.9965 47 1 0.5029 5.7762 3.3838 48 1 1.6328 4.5109 2.8446 49 1 0.9965 4.4870 4.5072 50 1 1.3346 8.1740 3.2577 51 1 2.3628 8.4481 1.8309 52 1 1.5064 11.8433 2.9635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001367004382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:31 Heat of formation + Delta-G solvation = -29.154284 kcal Electronic energy + Delta-G solvation = -31265.288976 eV Core-core repulsion = 27266.092633 eV Total energy + Delta-G solvation = -3999.196343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43470 -39.29487 -38.47906 -35.37457 -34.61195 -34.04605 -32.83930 -31.38688 -30.18431 -29.88553 -28.25899 -27.60588 -25.80094 -25.00415 -23.10045 -22.68603 -22.32894 -21.07460 -20.56633 -18.86945 -18.33794 -17.46750 -16.86225 -16.56740 -16.40069 -16.11427 -15.60527 -15.41152 -15.02084 -14.54568 -14.35549 -14.06592 -13.75350 -13.45332 -13.39033 -13.24223 -13.13612 -12.89541 -12.50478 -12.35858 -12.22736 -12.16055 -12.05857 -11.92107 -11.74664 -11.61427 -11.47056 -11.42477 -11.31393 -11.22321 -11.12415 -11.00560 -10.94758 -10.74784 -10.54764 -10.14435 -10.01711 -9.66588 -8.92215 -8.85441 -8.45087 -8.25826 -7.70418 -6.06470 -4.11033 2.43837 2.65209 3.30587 3.32594 3.35516 3.40819 3.57011 4.01818 4.11707 4.30781 4.42978 4.44493 4.61742 4.63263 4.71622 4.80242 4.92058 5.01156 5.13919 5.17306 5.21432 5.25947 5.28351 5.28970 5.36583 5.42194 5.47800 5.49046 5.56341 5.58938 5.64133 5.68028 5.71098 5.76347 5.81391 5.87776 5.94226 6.00518 6.07469 6.12895 6.17057 6.37572 6.70095 6.81449 7.06870 7.32677 7.39715 7.51059 7.90014 7.95745 8.21037 8.37088 8.87766 9.05837 9.54347 11.01517 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003104 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.974217 B = 9018.373923 C =10100.136505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.531 3.469 5 O -0.545 6.545 6 N -0.621 5.621 7 C 0.057 3.943 8 C 0.065 3.935 9 H 0.155 0.845 10 C -0.136 4.136 11 C 0.107 3.893 12 H 0.125 0.875 13 C 0.027 3.973 14 N -0.496 5.496 15 C 0.020 3.980 16 C 0.508 3.492 17 O -0.526 6.526 18 N -0.597 5.597 19 C 0.105 3.895 20 C -0.168 4.168 21 C 0.249 3.751 22 C -0.526 4.526 23 H 0.056 0.944 24 C 0.062 3.938 25 N -0.896 5.896 26 Si 0.897 3.103 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.031 0.969 51 H 0.043 0.957 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -19.513 -4.603 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.177 4.177 4 C 0.321 3.679 5 O -0.423 6.423 6 N -0.356 5.356 7 C -0.067 4.067 8 C -0.043 4.043 9 H 0.172 0.828 10 C -0.174 4.174 11 C 0.003 3.997 12 H 0.143 0.857 13 C -0.101 4.101 14 N -0.220 5.220 15 C -0.111 4.111 16 C 0.293 3.707 17 O -0.403 6.403 18 N -0.330 5.330 19 C -0.019 4.019 20 C -0.226 4.226 21 C 0.130 3.870 22 C -0.565 4.565 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.535 5.535 26 Si 0.725 3.275 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.203 1.203 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.049 0.951 51 H 0.061 0.939 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.187 -19.203 -5.020 19.884 hybrid contribution -0.330 0.267 0.727 0.842 sum 0.858 -18.937 -4.293 19.436 Atomic orbital electron populations 1.21796 0.95344 1.01951 1.01978 1.21275 0.95369 0.94506 1.03410 1.21717 0.91431 1.00161 1.04439 1.20466 0.90089 0.81978 0.75409 1.90690 1.70588 1.30445 1.50569 1.49336 1.07413 1.05664 1.73199 1.23408 0.98628 0.81945 1.02728 1.24954 0.90472 0.99554 0.89288 0.82750 1.24310 1.01148 0.94101 0.97854 1.24302 0.81175 0.98133 0.96049 0.85678 1.23711 1.01527 0.88471 0.96433 1.64787 1.31569 1.23758 1.01865 1.22457 0.95231 0.96347 0.97044 1.20032 0.80021 0.87638 0.82971 1.90614 1.60001 1.57057 1.32582 1.48263 1.39035 1.18209 1.27457 1.21415 0.96136 0.93317 0.91046 1.22220 0.99640 0.99873 1.00868 1.19245 0.93079 0.76113 0.98568 1.21397 1.12611 0.92361 1.30145 0.92535 1.24918 0.95212 0.98271 0.95608 1.69917 1.25549 1.16731 1.41261 0.86571 0.80570 0.80198 0.80159 1.20129 1.21208 1.20294 0.92552 0.92628 0.92381 0.91339 0.91308 0.89047 0.88968 0.90285 0.90693 0.90043 0.88269 0.88783 0.92358 0.88390 0.92015 0.91932 0.89782 0.91865 0.93603 0.92112 0.95123 0.93903 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.72 16 2 C -0.11 -0.96 5.22 -26.74 -0.14 -1.10 16 3 C -0.14 -1.26 4.98 -27.88 -0.14 -1.40 16 4 C 0.53 6.43 7.89 -10.99 -0.09 6.34 16 5 O -0.55 -8.30 16.33 5.55 0.09 -8.21 16 6 N -0.62 -7.03 2.98 -155.65 -0.46 -7.50 16 7 C 0.06 0.64 5.61 -1.68 -0.01 0.64 16 8 C 0.07 0.84 4.11 -62.30 -0.26 0.58 16 9 H 0.16 2.40 6.37 -51.93 -0.33 2.07 16 10 C -0.14 -1.41 6.93 -21.22 -0.15 -1.55 16 11 C 0.11 1.14 5.26 -61.50 -0.32 0.82 16 12 H 0.13 1.30 8.06 -51.93 -0.42 0.88 16 13 C 0.03 0.31 6.30 -1.48 -0.01 0.30 16 14 N -0.50 -6.81 5.16 -218.19 -1.13 -7.94 16 15 C 0.02 0.29 3.21 -4.98 -0.02 0.27 16 16 C 0.51 9.70 7.26 -10.98 -0.08 9.62 16 17 O -0.53 -12.03 13.57 5.56 0.08 -11.96 16 18 N -0.60 -11.75 2.46 -175.06 -0.43 -12.18 16 19 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 20 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 21 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 22 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16 23 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 26 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.08 0.95 5.16 -51.93 -0.27 0.68 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.66 7.61 -51.93 -0.40 0.27 16 43 H 0.10 1.33 7.40 -51.93 -0.38 0.94 16 44 H 0.06 0.78 4.70 -51.93 -0.24 0.54 16 45 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 46 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.52 7.22 -51.93 -0.37 0.14 16 49 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 50 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 51 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 52 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -33.01 405.92 -9.96 -42.97 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.01 Total: 0.79 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.93 Total: 6.64 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -1.28 Total: -52.95 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.17 Total: -20.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.01 -9.96 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367004382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.820 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds