Wall clock time and date at job start Tue Mar 31 2020 19:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47321 * 2 1 4 4 C 1.50697 * 109.47534 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99841 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00374 * 180.02562 * 4 3 2 7 7 C 1.47865 * 126.92392 * 359.96823 * 6 4 3 8 8 C 1.56022 * 105.11112 * 181.91940 * 7 6 4 9 9 H 1.08992 * 116.25862 * 159.69781 * 8 7 6 10 10 C 1.57085 * 100.41178 * 33.04910 * 8 7 6 11 11 C 1.49280 * 126.92802 * 179.97438 * 6 4 3 12 12 H 1.08999 * 116.12548 * 16.86933 * 11 6 4 13 13 C 1.55965 * 104.86944 * 246.63104 * 11 6 4 14 14 N 1.48283 * 105.09369 * 289.94059 * 13 11 6 15 15 C 1.46894 * 111.00129 * 121.26744 * 14 13 11 16 16 C 1.50707 * 109.47170 * 184.12989 * 15 14 13 17 17 O 1.21279 * 119.99508 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99986 * 179.97438 * 16 15 14 19 19 C 1.46504 * 120.00143 * 0.02562 * 18 16 15 20 20 C 1.52999 * 109.46735 * 269.99791 * 19 18 16 21 21 C 1.46500 * 120.00106 * 180.02562 * 18 16 15 22 22 C 1.50708 * 109.47039 * 270.00300 * 21 18 16 23 23 H 1.07998 * 119.99545 * 359.97438 * 22 21 18 24 24 C 1.37872 * 120.00142 * 179.72261 * 22 21 18 25 25 N 1.31516 * 120.00008 * 0.27714 * 24 22 21 26 26 Si 1.86796 * 120.00093 * 180.27311 * 24 22 21 27 27 H 1.48500 * 109.47368 * 59.99893 * 26 24 22 28 28 H 1.48503 * 109.47021 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47132 * 299.99814 * 26 24 22 30 30 H 1.09007 * 109.47262 * 300.00029 * 1 2 3 31 31 H 1.08994 * 109.47645 * 59.99789 * 1 2 3 32 32 H 1.09004 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47262 * 239.99971 * 2 1 3 34 34 H 1.09008 * 109.47692 * 120.00042 * 2 1 3 35 35 H 1.08998 * 109.47576 * 59.99810 * 3 2 1 36 36 H 1.09007 * 109.46786 * 300.00049 * 3 2 1 37 37 H 1.08994 * 110.31366 * 63.01084 * 7 6 4 38 38 H 1.09001 * 110.39537 * 300.86801 * 7 6 4 39 39 H 1.08999 * 112.35781 * 64.12717 * 10 8 7 40 40 H 1.09001 * 112.35917 * 191.53759 * 10 8 7 41 41 H 1.08997 * 111.38853 * 170.46840 * 13 11 6 42 42 H 1.09002 * 109.22891 * 48.29781 * 13 11 6 43 43 H 1.08998 * 109.47373 * 64.13500 * 15 14 13 44 44 H 1.08994 * 109.47497 * 304.12881 * 15 14 13 45 45 H 1.08992 * 109.47199 * 29.99685 * 19 18 16 46 46 H 1.08998 * 109.47268 * 149.99935 * 19 18 16 47 47 H 1.09002 * 109.47695 * 299.99753 * 20 19 18 48 48 H 1.08998 * 109.47125 * 60.00056 * 20 19 18 49 49 H 1.09008 * 109.46960 * 180.02562 * 20 19 18 50 50 H 1.08997 * 109.47658 * 150.00156 * 21 18 16 51 51 H 1.08996 * 109.47243 * 29.99651 * 21 18 16 52 52 H 0.97003 * 120.00266 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.6413 3.9701 0.0002 8 6 4.8669 4.9343 -0.0499 9 1 4.6687 5.9486 -0.3961 10 6 5.8644 4.0810 -0.9127 11 6 5.7028 2.7898 -0.0002 12 1 6.2921 1.9181 -0.2845 13 6 6.0280 3.4311 1.3838 14 7 5.4851 4.8088 1.3081 15 6 4.4899 5.0412 2.3632 16 6 3.8882 6.4125 2.1932 17 8 4.2524 7.1256 1.2823 18 7 2.9449 6.8458 3.0526 19 6 2.5046 5.9840 4.1525 20 6 1.3244 5.1279 3.6886 21 6 2.3596 8.1785 2.8870 22 6 3.1705 9.1834 3.6642 23 1 4.0350 8.8613 4.2257 24 6 2.8117 10.5146 3.6542 25 7 1.7586 10.9067 2.9708 26 14 3.8212 11.7612 4.6113 27 1 5.2169 11.7620 4.1043 28 1 3.2307 13.1129 4.4396 29 1 3.8180 11.3996 6.0517 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.0662 4.1361 0.9110 38 1 3.0103 4.1144 -0.8768 39 1 5.4986 3.9145 -1.9259 40 1 6.8745 4.4907 -0.9051 41 1 7.1021 3.4569 1.5673 42 1 5.5226 2.8676 2.1682 43 1 4.9720 4.9745 3.3385 44 1 3.7044 4.2888 2.2940 45 1 3.3261 5.3357 4.4573 46 1 2.1963 6.6010 4.9965 47 1 0.5029 5.7762 3.3838 48 1 1.6328 4.5109 2.8446 49 1 0.9965 4.4870 4.5072 50 1 1.3346 8.1740 3.2577 51 1 2.3628 8.4481 1.8309 52 1 1.5064 11.8433 2.9635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001367004382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:30 Heat of formation + Delta-G solvation = -50.626979 kcal Electronic energy + Delta-G solvation = -31266.220102 eV Core-core repulsion = 27266.092633 eV Total energy + Delta-G solvation = -4000.127469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42842 -40.57373 -39.64623 -36.91573 -35.33914 -35.16650 -34.79250 -32.45762 -31.55223 -30.83741 -29.50190 -28.73851 -27.19588 -25.97258 -24.71554 -23.96146 -23.27073 -21.91090 -21.54095 -20.04016 -19.54759 -18.60109 -18.39578 -17.85426 -17.78834 -17.25444 -16.76849 -16.61030 -16.25217 -16.05908 -15.52986 -15.14200 -14.90247 -14.66682 -14.41546 -14.29359 -14.19970 -14.00148 -13.81748 -13.56436 -13.28282 -13.24015 -13.08066 -13.01656 -12.95680 -12.74366 -12.70997 -12.61168 -12.50151 -12.46552 -12.24658 -12.13261 -12.12682 -12.04042 -11.77763 -11.69601 -11.66842 -10.97495 -10.61687 -10.41290 -9.84879 -9.41670 -9.23401 -8.20134 -6.34106 1.37726 1.41441 1.48480 1.52393 1.76133 1.87097 2.23402 2.42048 2.87221 3.09605 3.23977 3.38585 3.57841 3.65250 3.73294 3.89535 3.95032 3.97959 4.05241 4.13372 4.26156 4.33997 4.40393 4.44636 4.46183 4.58272 4.61798 4.63161 4.68734 4.70486 4.74922 4.86752 4.87152 4.92601 4.95097 4.99104 5.07353 5.11025 5.16422 5.19936 5.23729 5.25189 5.37294 5.43329 5.60833 5.70345 5.83131 5.92361 6.10202 6.42012 6.73578 6.84604 7.04190 7.31867 7.54600 8.86208 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003104 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.974217 B = 9018.373923 C =10100.136505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.528 3.472 5 O -0.580 6.580 6 N -0.618 5.618 7 C 0.066 3.934 8 C 0.055 3.945 9 H 0.124 0.876 10 C -0.122 4.122 11 C 0.108 3.892 12 H 0.132 0.868 13 C 0.034 3.966 14 N -0.515 5.515 15 C 0.037 3.963 16 C 0.501 3.499 17 O -0.572 6.572 18 N -0.603 5.603 19 C 0.098 3.902 20 C -0.159 4.159 21 C 0.267 3.733 22 C -0.542 4.542 23 H 0.050 0.950 24 C 0.010 3.990 25 N -0.927 5.927 26 Si 0.962 3.038 27 H -0.279 1.279 28 H -0.279 1.279 29 H -0.262 1.262 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.021 0.979 51 H 0.000 1.000 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -21.093 -3.587 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.174 4.174 4 C 0.319 3.681 5 O -0.460 6.460 6 N -0.352 5.352 7 C -0.058 4.058 8 C -0.053 4.053 9 H 0.141 0.859 10 C -0.161 4.161 11 C 0.005 3.995 12 H 0.150 0.850 13 C -0.094 4.094 14 N -0.240 5.240 15 C -0.094 4.094 16 C 0.289 3.711 17 O -0.452 6.452 18 N -0.335 5.335 19 C -0.024 4.024 20 C -0.217 4.217 21 C 0.146 3.854 22 C -0.580 4.580 23 H 0.069 0.931 24 C -0.189 4.189 25 N -0.567 5.567 26 Si 0.787 3.213 27 H -0.204 1.204 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.039 0.961 51 H 0.018 0.982 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.473 -20.814 -3.976 21.242 hybrid contribution -0.411 0.760 0.378 0.943 sum 1.062 -20.054 -3.599 20.402 Atomic orbital electron populations 1.21766 0.93817 1.02524 1.02544 1.21235 0.96602 0.94150 1.02293 1.21771 0.89303 1.00595 1.05691 1.20965 0.91164 0.81437 0.74531 1.90676 1.71484 1.31556 1.52269 1.49366 1.07709 1.05437 1.72674 1.23267 0.97930 0.81492 1.03065 1.24753 0.92193 0.98721 0.89651 0.85873 1.24253 1.00763 0.93183 0.97880 1.24358 0.81029 0.98276 0.95877 0.84996 1.23720 1.02150 0.86896 0.96671 1.64770 1.31637 1.25632 1.01913 1.22324 0.95935 0.93156 0.98001 1.20897 0.79178 0.89190 0.81805 1.90601 1.61309 1.58861 1.34390 1.48253 1.39218 1.16992 1.29043 1.21719 0.98369 0.93126 0.89204 1.22139 0.97606 0.99491 1.02451 1.18646 0.92630 0.78778 0.95393 1.21695 1.12612 0.93427 1.30286 0.93127 1.25782 0.96272 1.00297 0.96539 1.70031 1.26968 1.17253 1.42449 0.85551 0.78520 0.77853 0.79391 1.20435 1.20431 1.18675 0.91978 0.92019 0.91887 0.92493 0.92459 0.87709 0.87570 0.90619 0.89600 0.89104 0.87791 0.87437 0.92083 0.86954 0.89759 0.88820 0.91019 0.93844 0.92384 0.88886 0.96145 0.98158 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.10 -1.70 5.22 30.59 0.16 -1.54 16 3 C -0.13 -2.16 4.98 29.85 0.15 -2.01 16 4 C 0.53 11.80 7.89 87.66 0.69 12.49 16 5 O -0.58 -16.92 16.33 -3.04 -0.05 -16.97 16 6 N -0.62 -12.72 2.98 -764.75 -2.28 -15.00 16 7 C 0.07 1.40 5.61 87.17 0.49 1.89 16 8 C 0.05 1.39 4.11 46.85 0.19 1.58 16 9 H 0.12 3.99 6.37 -2.39 -0.02 3.98 16 10 C -0.12 -2.37 6.93 34.17 0.24 -2.13 16 11 C 0.11 2.09 5.26 47.62 0.25 2.34 16 12 H 0.13 2.45 8.06 -2.39 -0.02 2.44 16 13 C 0.03 0.68 6.30 87.06 0.55 1.22 16 14 N -0.52 -13.46 5.16 -844.23 -4.36 -17.82 16 15 C 0.04 0.98 3.21 85.56 0.27 1.25 16 16 C 0.50 19.23 7.26 87.66 0.64 19.87 16 17 O -0.57 -27.17 13.57 -3.03 -0.04 -27.21 16 18 N -0.60 -23.92 2.46 -826.16 -2.03 -25.95 16 19 C 0.10 2.80 5.93 86.38 0.51 3.31 16 20 C -0.16 -3.51 10.24 71.98 0.74 -2.78 16 21 C 0.27 13.83 5.16 85.64 0.44 14.27 16 22 C -0.54 -30.63 9.39 25.60 0.24 -30.39 16 23 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 24 C 0.01 0.58 5.46 84.65 0.46 1.04 16 25 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 26 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 34 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 1.66 5.16 -2.39 -0.01 1.64 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.21 7.61 -2.39 -0.02 1.19 16 43 H 0.11 2.72 7.40 -2.39 -0.02 2.70 16 44 H 0.09 1.89 4.70 -2.39 -0.01 1.88 16 45 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 46 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 47 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 48 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 49 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 51 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 52 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -74.21 405.92 1.18 -73.04 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.89 Total: 18.94 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.74 Total: 19.34 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -8.38 Total: -113.71 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.09 Total: -44.18 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.21 1.18 -73.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001367004382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.409 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds