Wall clock time and date at job start Tue Mar 31 2020 19:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47192 * 2 1 4 4 H 1.09004 * 115.55078 * 29.32690 * 3 2 1 5 5 C 1.52999 * 117.51617 * 243.63175 * 3 2 1 6 6 C 1.52996 * 117.49925 * 174.99946 * 3 2 1 7 7 H 1.09000 * 117.50117 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.49882 * 215.00238 * 6 3 2 9 9 O 1.21287 * 119.99940 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00082 * 180.02562 * 8 6 3 11 11 C 1.46502 * 120.00002 * 179.97438 * 10 8 6 12 12 C 1.53517 * 114.16794 * 154.99686 * 11 10 8 13 13 N 1.47479 * 87.99753 * 87.65217 * 12 11 10 14 14 C 1.46897 * 110.99965 * 138.66774 * 13 12 11 15 15 C 1.50703 * 109.46984 * 169.99962 * 14 13 12 16 16 O 1.21274 * 119.99976 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99878 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99895 * 359.97438 * 17 15 14 19 19 C 1.53004 * 109.46734 * 90.00522 * 18 17 15 20 20 C 1.46501 * 119.99803 * 180.02562 * 17 15 14 21 21 C 1.50698 * 109.47061 * 90.00159 * 20 17 15 22 22 H 1.08006 * 120.00241 * 359.97438 * 21 20 17 23 23 C 1.37882 * 120.00044 * 179.97438 * 21 20 17 24 24 N 1.31515 * 120.00092 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99788 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47522 * 90.00095 * 25 23 21 27 27 H 1.48504 * 109.46916 * 210.00316 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99581 * 25 23 21 29 29 C 1.47487 * 87.83637 * 26.97912 * 13 12 11 30 30 H 1.09006 * 109.46763 * 59.99765 * 1 2 3 31 31 H 1.08995 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47168 * 300.00287 * 1 2 3 33 33 H 1.09000 * 109.47102 * 240.00221 * 2 1 3 34 34 H 1.08999 * 109.47275 * 119.99830 * 2 1 3 35 35 H 1.09006 * 117.49884 * 145.03104 * 5 3 2 36 36 H 1.09000 * 117.50033 * 0.02562 * 5 3 2 37 37 H 0.97003 * 119.99924 * 359.97438 * 10 8 6 38 38 H 1.09000 * 113.38390 * 21.92209 * 11 10 8 39 39 H 1.09002 * 113.47888 * 332.85575 * 12 11 10 40 40 H 1.09003 * 113.47419 * 202.44909 * 12 11 10 41 41 H 1.08993 * 109.47675 * 290.00415 * 14 13 12 42 42 H 1.09000 * 109.47111 * 50.00574 * 14 13 12 43 43 H 1.09004 * 109.47425 * 210.00288 * 18 17 15 44 44 H 1.09002 * 109.47453 * 330.00469 * 18 17 15 45 45 H 1.09004 * 109.46606 * 179.97438 * 19 18 17 46 46 H 1.08995 * 109.46947 * 299.99452 * 19 18 17 47 47 H 1.08998 * 109.47514 * 60.00172 * 19 18 17 48 48 H 1.09000 * 109.47042 * 209.99936 * 20 17 15 49 49 H 1.09000 * 109.47336 * 329.99875 * 20 17 15 50 50 H 0.97003 * 119.99858 * 179.97438 * 24 23 21 51 51 H 1.09004 * 113.47787 * 87.75324 * 29 13 12 52 52 H 1.09001 * 113.47615 * 218.16496 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8438 1.9080 -1.2157 6 6 3.5501 1.6579 0.1183 7 1 4.1804 0.7719 0.1957 8 6 4.0228 2.8617 0.8919 9 8 3.2157 3.6165 1.3919 10 7 5.3424 3.1002 1.0272 11 6 5.8019 4.2708 1.7788 12 6 7.2114 4.1250 2.3693 13 7 7.7430 4.6400 1.0937 14 6 8.8445 5.5839 1.3251 15 6 9.5200 5.8985 0.0152 16 8 9.1227 5.3871 -1.0101 17 7 10.5658 6.7482 -0.0167 18 6 11.0454 7.3663 1.2219 19 6 12.1169 6.4758 1.8545 20 6 11.2221 7.0544 -1.2902 21 6 10.5563 8.2485 -1.9240 22 1 9.7269 8.7309 -1.4281 23 6 11.0060 8.7254 -3.1371 24 7 10.4246 9.7672 -3.6905 25 14 12.4410 7.8916 -3.9944 26 1 11.9299 6.8201 -4.8865 27 1 13.1859 8.8927 -4.7997 28 1 13.3482 7.2994 -2.9787 29 6 6.4648 5.3534 0.9134 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.7211 2.9434 -1.5338 36 1 3.0091 1.1867 -2.0161 37 1 5.9879 2.4968 0.6270 38 1 5.0609 4.6519 2.4815 39 1 7.4928 3.0915 2.5713 40 1 7.3980 4.7858 3.2159 41 1 8.4507 6.5022 1.7606 42 1 9.5671 5.1384 2.0087 43 1 11.4714 8.3445 0.9986 44 1 10.2131 7.4823 1.9161 45 1 12.4740 6.9360 2.7758 46 1 11.6909 5.4977 2.0778 47 1 12.9492 6.3598 1.1603 48 1 12.2743 7.2769 -1.1123 49 1 11.1400 6.1961 -1.9570 50 1 10.7413 10.1028 -4.5438 51 1 6.4512 6.3425 1.3713 52 1 6.1139 5.3618 -0.1185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391445727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:08 Heat of formation + Delta-G solvation = -36.195959 kcal Electronic energy + Delta-G solvation = -29144.453356 eV Core-core repulsion = 25144.951664 eV Total energy + Delta-G solvation = -3999.501693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88495 -40.82098 -39.99259 -37.93997 -36.92283 -35.09926 -34.81249 -32.92973 -32.09915 -31.24529 -29.45210 -27.01052 -26.67991 -25.20360 -24.57656 -24.33898 -23.56526 -21.69739 -21.09774 -20.78949 -19.91531 -19.12800 -18.44365 -18.01756 -17.45162 -17.22279 -16.72362 -16.44916 -16.16297 -15.88589 -15.86113 -15.32963 -15.16520 -14.91891 -14.84449 -14.70128 -14.48994 -13.92830 -13.78802 -13.72890 -13.53229 -13.41890 -13.34269 -13.21043 -12.99850 -12.74174 -12.56431 -12.44233 -12.33283 -12.18665 -12.04085 -11.93753 -11.91482 -11.81486 -11.76058 -11.27325 -11.08695 -10.85446 -10.82709 -10.63223 -10.13475 -9.82495 -9.38605 -8.36247 -6.41028 1.29830 1.34340 1.40447 1.42674 1.85495 2.02094 2.23187 2.28776 2.83424 2.97903 3.03875 3.38649 3.59212 3.66712 3.76587 3.80035 3.85411 4.02624 4.09367 4.13730 4.27669 4.30701 4.32885 4.43009 4.45369 4.48776 4.55342 4.60240 4.63867 4.74671 4.76845 4.78577 4.80102 4.91202 4.94198 4.97122 5.01136 5.01714 5.15625 5.21853 5.22864 5.30117 5.39674 5.45957 5.46593 5.50862 5.66077 5.86736 6.23407 6.51168 6.59977 6.76311 7.18147 7.20365 7.50171 8.80706 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002192 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.678863 B =12769.801167 C =14042.843049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.116 4.116 4 H 0.094 0.906 5 C -0.147 4.147 6 C -0.193 4.193 7 H 0.151 0.849 8 C 0.541 3.459 9 O -0.585 6.585 10 N -0.692 5.692 11 C 0.121 3.879 12 C 0.008 3.992 13 N -0.472 5.472 14 C 0.014 3.986 15 C 0.498 3.502 16 O -0.581 6.581 17 N -0.604 5.604 18 C 0.098 3.902 19 C -0.159 4.159 20 C 0.228 3.772 21 C -0.534 4.534 22 H 0.026 0.974 23 C 0.008 3.992 24 N -0.945 5.945 25 Si 0.949 3.051 26 H -0.278 1.278 27 H -0.274 1.274 28 H -0.238 1.238 29 C -0.018 4.018 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.416 0.584 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.268 0.732 51 H 0.088 0.912 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 -19.881 17.028 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.135 4.135 4 H 0.113 0.887 5 C -0.185 4.185 6 C -0.213 4.213 7 H 0.169 0.831 8 C 0.329 3.671 9 O -0.465 6.465 10 N -0.341 5.341 11 C 0.015 3.985 12 C -0.121 4.121 13 N -0.195 5.195 14 C -0.118 4.118 15 C 0.286 3.714 16 O -0.461 6.461 17 N -0.337 5.337 18 C -0.024 4.024 19 C -0.217 4.217 20 C 0.105 3.895 21 C -0.573 4.573 22 H 0.045 0.955 23 C -0.190 4.190 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.203 1.203 27 H -0.199 1.199 28 H -0.161 1.161 29 C -0.149 4.149 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.032 0.968 50 H 0.077 0.923 51 H 0.106 0.894 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.282 -19.932 16.201 27.312 hybrid contribution 0.569 1.141 -0.800 1.505 sum -8.714 -18.792 15.402 25.812 Atomic orbital electron populations 1.21753 0.95017 1.02299 1.01759 1.21164 0.96396 0.92037 1.03113 1.22484 0.90642 0.99594 1.00771 0.88734 1.23181 1.01530 1.02986 0.90782 1.22374 0.98419 0.98475 1.02059 0.83089 1.20234 0.82001 0.85849 0.78995 1.90665 1.54951 1.50434 1.50500 1.45460 1.06922 1.27255 1.54486 1.21943 0.96534 0.86340 0.93731 1.24323 0.90906 1.04175 0.92679 1.68782 1.01509 1.24512 1.24666 1.22671 0.96963 0.98216 0.93911 1.21231 0.79969 0.78415 0.91780 1.90631 1.64376 1.53563 1.37480 1.48094 1.32207 1.44329 1.09033 1.21769 0.98920 0.97152 0.84566 1.22154 0.98163 1.00155 1.01275 1.19228 0.93200 0.94078 0.82994 1.21571 1.16733 1.13307 1.05678 0.95546 1.25888 1.00140 0.95368 0.97578 1.70056 1.43586 1.26111 1.18811 0.85697 0.79341 0.78405 0.79390 1.20332 1.19882 1.16098 1.24482 0.91264 0.98038 1.01099 0.92765 0.91346 0.93188 0.90242 0.90760 0.90136 0.85429 0.74676 0.87039 0.87181 0.86927 0.89102 0.84810 0.91268 0.88590 0.88700 0.91755 0.93722 0.93519 0.96775 0.92303 0.89403 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.87 71.98 0.71 -0.96 16 2 C -0.09 -1.02 6.22 30.59 0.19 -0.83 16 3 C -0.12 -1.94 5.25 -10.80 -0.06 -2.00 16 4 H 0.09 2.04 7.60 -2.38 -0.02 2.02 16 5 C -0.15 -2.48 9.88 30.60 0.30 -2.18 16 6 C -0.19 -3.30 5.91 -11.54 -0.07 -3.37 16 7 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 8 C 0.54 12.87 7.61 87.66 0.67 13.54 16 9 O -0.59 -18.47 15.85 -3.05 -0.05 -18.52 16 10 N -0.69 -14.40 5.39 -441.36 -2.38 -16.78 16 11 C 0.12 2.52 4.60 45.47 0.21 2.73 16 12 C 0.01 0.12 7.44 83.58 0.62 0.74 16 13 N -0.47 -12.12 5.82 -931.81 -5.43 -17.55 16 14 C 0.01 0.35 3.85 85.56 0.33 0.68 16 15 C 0.50 20.02 7.74 87.66 0.68 20.70 16 16 O -0.58 -29.98 16.01 -3.01 -0.05 -30.02 16 17 N -0.60 -24.23 2.46 -826.14 -2.03 -26.26 16 18 C 0.10 2.74 5.93 86.38 0.51 3.25 16 19 C -0.16 -3.26 10.24 71.98 0.74 -2.52 16 20 C 0.23 11.25 4.23 85.63 0.36 11.61 16 21 C -0.53 -32.00 9.94 25.60 0.25 -31.74 16 22 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 23 C 0.01 0.49 5.47 84.66 0.46 0.95 16 24 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 25 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 29 C -0.02 -0.49 7.53 83.62 0.63 0.14 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.71 7.88 -2.39 -0.02 0.70 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.13 1.56 8.03 -2.39 -0.02 1.54 16 37 H 0.42 7.46 8.76 -92.71 -0.81 6.64 16 38 H 0.11 2.36 7.46 -2.39 -0.02 2.34 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.11 1.14 7.91 -2.39 -0.02 1.12 16 41 H 0.09 2.00 6.56 -2.39 -0.02 1.98 16 42 H 0.13 2.45 7.12 -2.39 -0.02 2.43 16 43 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 44 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 47 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 49 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 50 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 51 H 0.09 2.15 7.42 -2.39 -0.02 2.13 16 52 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -87.01 421.65 -1.17 -88.17 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.04 Total: 23.49 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.54 Total: 10.73 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -9.53 Total: -121.02 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.10 Total: -48.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -87.01 -1.17 -88.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391445727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.977 kcal (2) G-P(sol) polarization free energy of solvation -87.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds