Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.09001 * 109.46931 * 54.99954 * 3 2 1 5 5 N 1.46497 * 109.46808 * 294.99828 * 3 2 1 6 6 C 1.34780 * 120.00031 * 85.00504 * 5 3 2 7 7 O 1.21273 * 119.99822 * 359.97438 * 6 5 3 8 8 C 1.50695 * 119.99639 * 179.97438 * 6 5 3 9 9 C 1.52999 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47451 * 180.02562 * 9 8 6 11 11 C 1.39866 * 126.04287 * 89.96846 * 10 9 8 12 12 C 1.50705 * 125.89802 * 0.03191 * 11 10 9 13 13 N 1.30837 * 108.20458 * 180.02562 * 11 10 9 14 14 N 1.40086 * 108.20700 * 0.02562 * 13 11 10 15 15 C 1.46491 * 126.04129 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46957 * 90.02579 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.34955 * 107.92007 * 0.26426 * 14 13 11 25 25 C 1.50708 * 126.12162 * 179.73553 * 24 14 13 26 26 C 1.52998 * 109.46995 * 174.99840 * 3 2 1 27 27 H 1.09001 * 109.47175 * 59.99483 * 26 3 2 28 28 C 1.52995 * 109.47306 * 180.02562 * 26 3 2 29 29 O 1.42906 * 109.47099 * 299.99881 * 26 3 2 30 30 H 1.08999 * 109.47219 * 300.00303 * 1 2 3 31 31 H 1.08995 * 109.47080 * 60.00305 * 1 2 3 32 32 H 1.09008 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47219 * 239.99697 * 2 1 3 34 34 H 1.09000 * 109.46618 * 119.99717 * 2 1 3 35 35 H 0.97005 * 119.99776 * 264.99162 * 5 3 2 36 36 H 1.08997 * 109.47366 * 60.00063 * 8 6 5 37 37 H 1.09000 * 109.47755 * 299.99776 * 8 6 5 38 38 H 1.09001 * 109.47356 * 60.00206 * 9 8 6 39 39 H 1.09002 * 109.47319 * 299.99905 * 9 8 6 40 40 H 1.08999 * 109.46544 * 269.99193 * 12 11 10 41 41 H 1.09000 * 109.47294 * 29.99156 * 12 11 10 42 42 H 1.08993 * 109.46794 * 149.99571 * 12 11 10 43 43 H 1.09004 * 109.47166 * 330.02845 * 15 14 13 44 44 H 1.08994 * 109.47507 * 210.02551 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47042 * 90.02700 * 25 24 14 47 47 H 1.09007 * 109.46511 * 210.02061 * 25 24 14 48 48 H 1.08991 * 109.47237 * 330.02091 * 25 24 14 49 49 H 1.09001 * 109.46916 * 299.99870 * 28 26 3 50 50 H 1.09001 * 109.47440 * 59.99628 * 28 26 3 51 51 H 1.08998 * 109.47151 * 180.02562 * 28 26 3 52 52 H 0.96699 * 113.99857 * 179.97438 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0974 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3396 2.6319 -0.4345 8 6 0.0367 3.3385 -2.6545 9 6 -1.3826 3.8941 -2.5213 10 6 -1.7813 4.5678 -3.8091 11 6 -2.4175 3.9570 -4.8946 12 6 -2.8246 2.5085 -4.9796 13 7 -2.5983 4.8604 -5.8236 14 7 -2.0815 6.0764 -5.3581 15 6 -2.0791 7.3473 -6.0867 16 6 -3.3432 8.1067 -5.7762 17 1 -4.0751 7.6850 -5.1031 18 6 -3.5627 9.3427 -6.3466 19 7 -2.6714 9.8563 -7.1660 20 14 -5.1261 10.2873 -5.9558 21 1 -5.9592 9.4976 -5.0138 22 1 -4.7752 11.5893 -5.3335 23 1 -5.8864 10.5265 -7.2088 24 6 -1.5805 5.8688 -4.1223 25 6 -0.9199 6.9020 -3.2463 26 6 3.5648 1.4444 0.1258 27 1 3.9994 0.9052 -0.7160 28 6 4.0747 2.8868 0.1264 29 8 3.9428 0.8055 1.3469 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2720 2.1231 -1.9978 36 1 0.0680 2.6144 -3.4686 37 1 0.7281 4.1540 -2.8668 38 1 -1.4144 4.6182 -1.7071 39 1 -2.0738 3.0784 -2.3093 40 1 -2.0075 1.9259 -5.4052 41 1 -3.0545 2.1365 -3.9812 42 1 -3.7060 2.4155 -5.6139 43 1 -2.0264 7.1519 -7.1578 44 1 -1.2158 7.9390 -5.7824 45 1 -2.8260 10.7257 -7.5676 46 1 -1.6730 7.3869 -2.6252 47 1 -0.1798 6.4181 -2.6088 48 1 -0.4291 7.6479 -3.8712 49 1 3.7864 3.3745 -0.8048 50 1 3.6401 3.4256 0.9684 51 1 5.1611 2.8881 0.2155 52 1 4.8981 0.7701 1.4929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412935113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = -70.229397 kcal Electronic energy + Delta-G solvation = -29643.100699 eV Core-core repulsion = 25642.123206 eV Total energy + Delta-G solvation = -4000.977493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14582 -41.04777 -38.76998 -36.25436 -35.97930 -34.82720 -34.19005 -33.29156 -31.85917 -31.35676 -30.46329 -28.31145 -27.61666 -27.30281 -25.26272 -23.87248 -22.90667 -21.71609 -21.37665 -20.29684 -20.12213 -18.82851 -18.47986 -17.93596 -17.28298 -16.88327 -16.52293 -16.25569 -15.93580 -15.60381 -15.51076 -15.11061 -14.86330 -14.60587 -14.45590 -14.34374 -14.02600 -13.82864 -13.75949 -13.60092 -13.39743 -13.31375 -13.23656 -13.15700 -13.12718 -12.84793 -12.73026 -12.62718 -12.58201 -12.53910 -12.37123 -12.24120 -11.83777 -11.71860 -11.69125 -11.50392 -11.13819 -10.95092 -10.76012 -10.73510 -9.93949 -9.82991 -9.01097 -8.35734 -6.53192 1.18582 1.33734 1.35936 1.48337 1.77966 1.88772 1.95294 2.22151 2.32460 2.93602 3.45523 3.69726 3.84554 3.92379 3.96349 4.03214 4.12907 4.25859 4.29140 4.32702 4.37965 4.41444 4.56105 4.59148 4.65803 4.72369 4.73657 4.78451 4.86054 4.88171 4.92103 4.93256 4.98135 4.98950 5.01729 5.05070 5.12753 5.14941 5.22832 5.29633 5.35047 5.46558 5.49739 5.50440 5.57220 5.63077 5.79926 6.06987 6.32598 6.62417 6.63553 6.91410 7.12877 7.18201 7.39398 8.70341 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002191 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.498151 B =12774.731621 C =13460.041433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.151 3.849 4 H 0.063 0.937 5 N -0.712 5.712 6 C 0.519 3.481 7 O -0.568 6.568 8 C -0.125 4.125 9 C -0.003 4.003 10 C -0.256 4.256 11 C 0.054 3.946 12 C -0.063 4.063 13 N -0.351 5.351 14 N -0.356 5.356 15 C 0.275 3.725 16 C -0.551 4.551 17 H 0.046 0.954 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.266 1.266 23 H -0.274 1.274 24 C 0.078 3.922 25 C -0.082 4.082 26 C 0.103 3.897 27 H 0.082 0.918 28 C -0.185 4.185 29 O -0.579 6.579 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.274 0.726 46 H 0.074 0.926 47 H 0.107 0.893 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.831 -18.504 13.900 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.046 3.954 4 H 0.081 0.919 5 N -0.367 5.367 6 C 0.308 3.692 7 O -0.447 6.447 8 C -0.165 4.165 9 C -0.042 4.042 10 C -0.268 4.268 11 C -0.111 4.111 12 C -0.121 4.121 13 N -0.175 5.175 14 N -0.136 5.136 15 C 0.156 3.844 16 C -0.590 4.590 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.190 1.190 23 H -0.199 1.199 24 C -0.052 4.052 25 C -0.140 4.140 26 C 0.044 3.956 27 H 0.100 0.900 28 C -0.242 4.242 29 O -0.388 6.388 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.125 0.875 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.246 -18.045 13.250 27.085 hybrid contribution 0.124 0.992 0.078 1.002 sum 15.370 -17.053 13.327 26.545 Atomic orbital electron populations 1.21756 0.96173 1.00484 1.01505 1.21843 0.95617 0.95809 1.02949 1.20728 0.93908 0.93596 0.87177 0.91904 1.45803 1.16753 1.57703 1.16412 1.20914 0.81168 0.77358 0.89805 1.90717 1.52110 1.59869 1.42009 1.21632 0.98219 1.01783 0.94853 1.19351 0.94975 0.98744 0.91174 1.19722 1.14607 0.92503 0.99976 1.22780 0.98749 0.97477 0.92066 1.20207 1.01997 0.86165 1.03728 1.77209 1.23510 0.91136 1.25599 1.48995 1.43217 1.08349 1.13029 1.19121 0.97793 0.76132 0.91369 1.21452 1.04812 1.03414 1.29290 0.93611 1.25740 1.00381 0.97722 0.94096 1.70006 1.36369 1.18913 1.30318 0.85318 0.78554 0.78367 0.78300 1.20004 1.19043 1.19891 1.21461 0.99070 0.97117 0.87557 1.20437 1.00318 0.95732 0.97555 1.21823 0.92759 0.93152 0.87911 0.89995 1.22507 1.02350 0.96497 1.02876 1.86444 1.30606 1.80943 1.40792 0.94434 0.93396 0.92871 0.90655 0.90704 0.74852 0.87336 0.87773 0.91964 0.91200 0.88963 0.89100 0.91814 0.96285 0.93465 0.91727 0.90727 0.87467 0.91841 0.90827 0.93500 0.90352 0.75003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 71.98 0.61 -2.26 16 2 C -0.12 -1.94 5.53 30.60 0.17 -1.78 16 3 C 0.15 2.31 2.05 44.99 0.09 2.41 16 4 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 5 N -0.71 -9.57 4.34 -442.55 -1.92 -11.49 16 6 C 0.52 10.31 6.40 87.65 0.56 10.87 16 7 O -0.57 -15.92 13.12 -3.01 -0.04 -15.96 16 8 C -0.12 -2.34 5.68 29.85 0.17 -2.17 16 9 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 10 C -0.26 -8.75 5.35 -20.14 -0.11 -8.86 16 11 C 0.05 2.00 7.22 43.10 0.31 2.31 16 12 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 13 N -0.35 -16.44 12.58 -47.38 -0.60 -17.03 16 14 N -0.36 -17.06 3.60 -338.41 -1.22 -18.27 16 15 C 0.28 14.75 6.00 85.64 0.51 15.27 16 16 C -0.55 -31.57 9.39 25.60 0.24 -31.33 16 17 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 18 C 0.02 1.20 5.46 84.66 0.46 1.66 16 19 N -0.92 -52.42 13.29 21.45 0.28 -52.14 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 C 0.08 3.05 6.93 41.41 0.29 3.34 16 25 C -0.08 -2.63 9.72 71.24 0.69 -1.94 16 26 C 0.10 0.99 3.21 30.59 0.10 1.09 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 C -0.18 -1.65 9.38 71.98 0.67 -0.97 16 29 O -0.58 -6.38 12.56 -148.98 -1.87 -8.25 16 30 H 0.04 0.91 7.85 -2.39 -0.02 0.89 16 31 H 0.05 1.07 5.64 -2.39 -0.01 1.05 16 32 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.23 7.54 -2.39 -0.02 1.21 16 35 H 0.41 2.99 8.39 -92.70 -0.78 2.22 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.72 7.75 -2.39 -0.02 1.70 16 39 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 2.00 7.25 -2.39 -0.02 1.98 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.05 2.50 7.04 -2.39 -0.02 2.49 16 45 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.11 2.56 7.79 -2.38 -0.02 2.54 16 48 H 0.06 2.12 7.07 -2.39 -0.02 2.11 16 49 H 0.07 0.60 7.45 -2.39 -0.02 0.58 16 50 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.40 0.90 9.08 -74.06 -0.67 0.23 16 Total: -1.00 -75.54 419.17 1.78 -73.76 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.53 Total: 16.71 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 5.64 Total: -13.23 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.45 Total: -98.93 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -1.91 Total: -24.20 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -75.54 1.78 -73.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412935113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.529 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds