Wall clock time and date at job start Tue Mar 31 2020 20:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09003 * 109.46846 * 54.99421 * 3 2 1 5 5 N 1.46497 * 109.46906 * 294.99783 * 3 2 1 6 6 C 1.34780 * 120.00031 * 155.00257 * 5 3 2 7 7 O 1.21273 * 119.99822 * 359.97438 * 6 5 3 8 8 C 1.50695 * 119.99639 * 179.97438 * 6 5 3 9 9 C 1.52999 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47451 * 180.02562 * 9 8 6 11 11 C 1.39866 * 126.04287 * 89.96846 * 10 9 8 12 12 C 1.50705 * 125.89802 * 0.03191 * 11 10 9 13 13 N 1.30837 * 108.20458 * 180.02562 * 11 10 9 14 14 N 1.40086 * 108.20700 * 0.02562 * 13 11 10 15 15 C 1.46491 * 126.04129 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46957 * 90.02579 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.34955 * 107.92007 * 0.26426 * 14 13 11 25 25 C 1.50708 * 126.12162 * 179.73553 * 24 14 13 26 26 C 1.53002 * 109.46973 * 174.99212 * 3 2 1 27 27 H 1.08990 * 109.47276 * 300.00190 * 26 3 2 28 28 C 1.52997 * 109.46702 * 179.97438 * 26 3 2 29 29 O 1.42905 * 109.46757 * 60.00142 * 26 3 2 30 30 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47547 * 300.00541 * 1 2 3 32 32 H 1.09007 * 109.46629 * 60.00077 * 1 2 3 33 33 H 1.09000 * 109.47547 * 239.99459 * 2 1 3 34 34 H 1.09012 * 109.46429 * 119.99481 * 2 1 3 35 35 H 0.97005 * 119.99776 * 334.98915 * 5 3 2 36 36 H 1.08997 * 109.47366 * 60.00063 * 8 6 5 37 37 H 1.09000 * 109.47755 * 299.99776 * 8 6 5 38 38 H 1.09001 * 109.47356 * 60.00206 * 9 8 6 39 39 H 1.09002 * 109.47319 * 299.99905 * 9 8 6 40 40 H 1.08999 * 109.46544 * 269.99193 * 12 11 10 41 41 H 1.09000 * 109.47294 * 29.99156 * 12 11 10 42 42 H 1.08993 * 109.46794 * 149.99571 * 12 11 10 43 43 H 1.09004 * 109.47166 * 330.02845 * 15 14 13 44 44 H 1.08994 * 109.47507 * 210.02551 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47042 * 90.02700 * 25 24 14 47 47 H 1.09007 * 109.46511 * 210.02061 * 25 24 14 48 48 H 1.08991 * 109.47237 * 330.02091 * 25 24 14 49 49 H 1.09004 * 109.47127 * 60.00395 * 28 26 3 50 50 H 1.09004 * 109.46939 * 180.02562 * 28 26 3 51 51 H 1.09002 * 109.48004 * 300.00677 * 28 26 3 52 52 H 0.96702 * 114.00099 * 59.99587 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 1.5258 3.4384 -1.2997 7 8 1.7321 4.1028 -0.3063 8 6 1.1277 4.1120 -2.5876 9 6 1.0557 5.6249 -2.3707 10 6 0.6570 6.2986 -3.6584 11 6 -0.6502 6.5728 -4.0734 12 6 -1.9070 6.2457 -3.3086 13 7 -0.5936 7.1623 -5.2400 14 7 0.7536 7.2816 -5.6052 15 6 1.2617 7.8833 -6.8404 16 6 1.4984 9.3554 -6.6217 17 1 1.2915 9.7985 -5.6587 18 6 1.9852 10.1355 -7.6492 19 7 2.2375 9.5959 -8.8217 20 14 2.2859 11.9587 -7.3758 21 1 1.9256 12.3160 -5.9802 22 1 3.7201 12.2644 -7.6101 23 1 1.4516 12.7451 -8.3196 24 6 1.5003 6.7386 -4.6209 25 6 3.0041 6.6435 -4.5962 26 6 3.5649 1.4442 0.1259 27 1 3.8531 0.9569 1.0572 28 6 4.0749 2.8867 0.1253 29 8 4.1347 0.7374 -0.9777 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8902 35 1 1.4873 1.5659 -2.0463 36 1 0.1517 3.7438 -2.9037 37 1 1.8666 3.8898 -3.3574 38 1 2.0315 5.9935 -2.0544 39 1 0.3165 5.8468 -1.6010 40 1 -2.2545 5.2514 -3.5891 41 1 -1.6981 6.2693 -2.2391 42 1 -2.6773 6.9798 -3.5447 43 1 0.5312 7.7473 -7.6380 44 1 2.1988 7.4022 -7.1202 45 1 2.5796 10.1448 -9.5447 46 1 3.4168 7.5347 -4.1234 47 1 3.3030 5.7608 -4.0308 48 1 3.3801 6.5661 -5.6163 49 1 3.6402 3.4261 0.9668 50 1 5.1613 2.8879 0.2145 51 1 3.7866 3.3737 -0.8063 52 1 3.9192 1.1163 -1.8409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412935123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:51 Heat of formation + Delta-G solvation = -49.320966 kcal Electronic energy + Delta-G solvation = -29901.468768 eV Core-core repulsion = 25901.397932 eV Total energy + Delta-G solvation = -4000.070836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73038 -40.35741 -37.98097 -35.32540 -34.41031 -33.42680 -32.56814 -32.50525 -31.10016 -30.15149 -28.98514 -27.29443 -26.36023 -25.89184 -23.90075 -22.43635 -22.29451 -21.14883 -20.51459 -18.83251 -18.66575 -17.23826 -17.12843 -16.84103 -16.68886 -15.73508 -15.46102 -14.94883 -14.71375 -14.54679 -14.37737 -14.24149 -13.92701 -13.56603 -13.16909 -13.04044 -12.96080 -12.83120 -12.53984 -12.50174 -12.34555 -12.20624 -12.14113 -11.87827 -11.81670 -11.67741 -11.53068 -11.43932 -11.35625 -11.27195 -11.23936 -10.96508 -10.83530 -10.74434 -10.46935 -10.27840 -9.90076 -9.72442 -9.62265 -9.18776 -8.66965 -8.20336 -7.49610 -6.28415 -4.35543 2.54032 2.72566 2.93408 3.18584 3.26652 3.32264 3.38335 3.59732 3.98356 4.28158 4.35364 4.47986 4.69452 4.72852 4.92216 5.00419 5.05402 5.13321 5.16415 5.22946 5.30000 5.31074 5.34843 5.40348 5.56537 5.62648 5.64702 5.67840 5.72427 5.77839 5.81211 5.88595 5.91750 5.94582 5.99887 6.03849 6.09402 6.21618 6.23002 6.34472 6.42979 6.52783 6.83165 7.00981 7.09808 7.22282 7.32829 7.49559 7.64790 7.86444 8.03629 8.09550 8.65023 8.73931 9.31029 10.79243 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002332 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.912706 B =12002.472829 C =12759.828663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.112 3.888 4 H 0.095 0.905 5 N -0.733 5.733 6 C 0.513 3.487 7 O -0.532 6.532 8 C -0.135 4.135 9 C -0.009 4.009 10 C -0.269 4.269 11 C 0.050 3.950 12 C -0.064 4.064 13 N -0.297 5.297 14 N -0.325 5.325 15 C 0.257 3.743 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.094 3.906 25 C -0.086 4.086 26 C 0.091 3.909 27 H 0.102 0.898 28 C -0.178 4.178 29 O -0.561 6.561 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.267 0.733 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.054 0.946 51 H 0.060 0.940 52 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -19.683 16.065 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.007 3.993 4 H 0.113 0.887 5 N -0.387 5.387 6 C 0.301 3.699 7 O -0.408 6.408 8 C -0.175 4.175 9 C -0.048 4.048 10 C -0.281 4.281 11 C -0.114 4.114 12 C -0.123 4.123 13 N -0.121 5.121 14 N -0.104 5.104 15 C 0.139 3.861 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.038 4.038 25 C -0.144 4.144 26 C 0.031 3.969 27 H 0.120 0.880 28 C -0.235 4.235 29 O -0.366 6.366 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.172 -18.916 15.963 24.752 hybrid contribution 0.333 0.861 -0.319 0.977 sum 0.161 -18.055 15.643 23.890 Atomic orbital electron populations 1.21783 0.95282 1.01709 1.02264 1.21720 0.96230 0.94968 1.03499 1.21761 0.95137 0.93777 0.88600 0.88740 1.46182 1.71790 1.07417 1.13286 1.21028 0.75959 0.81727 0.91193 1.90704 1.49127 1.64003 1.36917 1.21769 1.03451 0.97883 0.94389 1.19376 1.01875 0.90101 0.93480 1.19344 0.91950 1.16795 1.00050 1.21944 0.95073 1.00167 0.94233 1.20021 0.92818 1.01239 0.98207 1.77277 0.97546 1.22267 1.15009 1.49245 1.02545 1.41572 1.17050 1.19658 0.95059 0.93487 0.77915 1.21340 1.44768 0.92345 0.98828 0.91762 1.24933 0.94802 0.99438 0.94659 1.69929 1.44119 1.36534 1.02408 0.86305 0.77956 0.83883 0.78586 1.19563 1.20632 1.20609 1.20779 0.94690 0.98014 0.90324 1.20345 0.88484 1.02384 1.03170 1.22389 0.91257 0.92923 0.90331 0.87981 1.22524 1.00903 0.96149 1.03940 1.86550 1.76329 1.56810 1.16949 0.92556 0.92674 0.92471 0.90821 0.90589 0.76560 0.89019 0.89140 0.91459 0.91310 0.91636 0.91266 0.91586 0.93086 0.93101 0.92306 0.90469 0.91156 0.90936 0.90757 0.92705 0.92078 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.80 37.16 0.36 -0.49 16 2 C -0.13 -0.70 5.26 -26.73 -0.14 -0.84 16 3 C 0.11 0.79 2.09 -67.93 -0.14 0.64 16 4 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 5 N -0.73 -5.01 3.84 -53.81 -0.21 -5.22 16 6 C 0.51 5.07 6.18 -10.99 -0.07 5.01 16 7 O -0.53 -7.03 13.11 5.56 0.07 -6.96 16 8 C -0.13 -1.37 5.68 -27.89 -0.16 -1.53 16 9 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 10 C -0.27 -4.66 5.35 -105.05 -0.56 -5.22 16 11 C 0.05 0.93 7.22 -82.40 -0.59 0.34 16 12 C -0.06 -0.89 10.26 36.01 0.37 -0.52 16 13 N -0.30 -6.76 12.58 33.67 0.42 -6.33 16 14 N -0.32 -7.48 3.60 -58.31 -0.21 -7.69 16 15 C 0.26 6.53 6.00 -5.20 -0.03 6.50 16 16 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 20 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.09 1.81 6.93 -82.26 -0.57 1.24 16 25 C -0.09 -1.37 9.72 36.01 0.35 -1.01 16 26 C 0.09 0.70 3.44 -26.73 -0.09 0.61 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 C -0.18 -1.68 8.06 37.16 0.30 -1.38 16 29 O -0.56 -4.60 12.76 -35.23 -0.45 -5.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 7.75 -51.93 -0.40 -0.07 16 33 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 34 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.40 1.90 8.60 -40.82 -0.35 1.55 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 39 H 0.07 0.95 7.21 -51.93 -0.37 0.57 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.84 7.25 -51.93 -0.38 0.46 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.05 1.28 7.04 -51.93 -0.37 0.91 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 48 H 0.07 1.19 7.07 -51.93 -0.37 0.82 16 49 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.64 5.78 -51.93 -0.30 0.34 16 52 H 0.37 2.28 8.49 45.56 0.39 2.66 16 LS Contribution 418.64 15.07 6.31 6.31 Total: -1.00 -32.32 418.64 -8.21 -40.53 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.35 Total: 2.82 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.52 Total: -10.27 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.74 Total: -43.53 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.38 Total: -12.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.32 -8.21 -40.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412935123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.787 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds