Wall clock time and date at job start Tue Mar 31 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09003 * 109.46846 * 54.99421 * 3 2 1 5 5 N 1.46497 * 109.46906 * 294.99783 * 3 2 1 6 6 C 1.34780 * 120.00031 * 155.00257 * 5 3 2 7 7 O 1.21273 * 119.99822 * 359.97438 * 6 5 3 8 8 C 1.50695 * 119.99639 * 179.97438 * 6 5 3 9 9 C 1.52999 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47451 * 180.02562 * 9 8 6 11 11 C 1.39866 * 126.04287 * 89.96846 * 10 9 8 12 12 C 1.50705 * 125.89802 * 0.03191 * 11 10 9 13 13 N 1.30837 * 108.20458 * 180.02562 * 11 10 9 14 14 N 1.40086 * 108.20700 * 0.02562 * 13 11 10 15 15 C 1.46491 * 126.04129 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46957 * 90.02579 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.34955 * 107.92007 * 0.26426 * 14 13 11 25 25 C 1.50708 * 126.12162 * 179.73553 * 24 14 13 26 26 C 1.53002 * 109.46973 * 174.99212 * 3 2 1 27 27 H 1.08990 * 109.47276 * 300.00190 * 26 3 2 28 28 C 1.52997 * 109.46702 * 179.97438 * 26 3 2 29 29 O 1.42905 * 109.46757 * 60.00142 * 26 3 2 30 30 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47547 * 300.00541 * 1 2 3 32 32 H 1.09007 * 109.46629 * 60.00077 * 1 2 3 33 33 H 1.09000 * 109.47547 * 239.99459 * 2 1 3 34 34 H 1.09012 * 109.46429 * 119.99481 * 2 1 3 35 35 H 0.97005 * 119.99776 * 334.98915 * 5 3 2 36 36 H 1.08997 * 109.47366 * 60.00063 * 8 6 5 37 37 H 1.09000 * 109.47755 * 299.99776 * 8 6 5 38 38 H 1.09001 * 109.47356 * 60.00206 * 9 8 6 39 39 H 1.09002 * 109.47319 * 299.99905 * 9 8 6 40 40 H 1.08999 * 109.46544 * 269.99193 * 12 11 10 41 41 H 1.09000 * 109.47294 * 29.99156 * 12 11 10 42 42 H 1.08993 * 109.46794 * 149.99571 * 12 11 10 43 43 H 1.09004 * 109.47166 * 330.02845 * 15 14 13 44 44 H 1.08994 * 109.47507 * 210.02551 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47042 * 90.02700 * 25 24 14 47 47 H 1.09007 * 109.46511 * 210.02061 * 25 24 14 48 48 H 1.08991 * 109.47237 * 330.02091 * 25 24 14 49 49 H 1.09004 * 109.47127 * 60.00395 * 28 26 3 50 50 H 1.09004 * 109.46939 * 180.02562 * 28 26 3 51 51 H 1.09002 * 109.48004 * 300.00677 * 28 26 3 52 52 H 0.96702 * 114.00099 * 59.99587 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 1.5258 3.4384 -1.2997 7 8 1.7321 4.1028 -0.3063 8 6 1.1277 4.1120 -2.5876 9 6 1.0557 5.6249 -2.3707 10 6 0.6570 6.2986 -3.6584 11 6 -0.6502 6.5728 -4.0734 12 6 -1.9070 6.2457 -3.3086 13 7 -0.5936 7.1623 -5.2400 14 7 0.7536 7.2816 -5.6052 15 6 1.2617 7.8833 -6.8404 16 6 1.4984 9.3554 -6.6217 17 1 1.2915 9.7985 -5.6587 18 6 1.9852 10.1355 -7.6492 19 7 2.2375 9.5959 -8.8217 20 14 2.2859 11.9587 -7.3758 21 1 1.9256 12.3160 -5.9802 22 1 3.7201 12.2644 -7.6101 23 1 1.4516 12.7451 -8.3196 24 6 1.5003 6.7386 -4.6209 25 6 3.0041 6.6435 -4.5962 26 6 3.5649 1.4442 0.1259 27 1 3.8531 0.9569 1.0572 28 6 4.0749 2.8867 0.1253 29 8 4.1347 0.7374 -0.9777 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8902 35 1 1.4873 1.5659 -2.0463 36 1 0.1517 3.7438 -2.9037 37 1 1.8666 3.8898 -3.3574 38 1 2.0315 5.9935 -2.0544 39 1 0.3165 5.8468 -1.6010 40 1 -2.2545 5.2514 -3.5891 41 1 -1.6981 6.2693 -2.2391 42 1 -2.6773 6.9798 -3.5447 43 1 0.5312 7.7473 -7.6380 44 1 2.1988 7.4022 -7.1202 45 1 2.5796 10.1448 -9.5447 46 1 3.4168 7.5347 -4.1234 47 1 3.3030 5.7608 -4.0308 48 1 3.3801 6.5661 -5.6163 49 1 3.6402 3.4261 0.9668 50 1 5.1613 2.8879 0.2145 51 1 3.7866 3.3737 -0.8063 52 1 3.9192 1.1163 -1.8409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412935123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:50 Heat of formation + Delta-G solvation = -71.042119 kcal Electronic energy + Delta-G solvation = -29902.410668 eV Core-core repulsion = 25901.397932 eV Total energy + Delta-G solvation = -4001.012735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15202 -41.18283 -38.69858 -36.11968 -35.90124 -34.82550 -34.19178 -33.22830 -31.90533 -31.39938 -30.47408 -28.31709 -27.62189 -27.25962 -25.28019 -23.89610 -22.97476 -21.81701 -21.27231 -20.30308 -20.12818 -18.83090 -18.02716 -17.78628 -17.49568 -17.20989 -16.46560 -16.24464 -16.00116 -15.59817 -15.36224 -14.98974 -14.86246 -14.60185 -14.56967 -14.34187 -14.07077 -13.88324 -13.75940 -13.54536 -13.39532 -13.31585 -13.20604 -13.15869 -12.85158 -12.78839 -12.73603 -12.62358 -12.59166 -12.53427 -12.24716 -12.05913 -12.00763 -11.82674 -11.75455 -11.69673 -11.13866 -11.10861 -10.76257 -10.70703 -9.84955 -9.83628 -9.01352 -8.35985 -6.53537 1.18339 1.33604 1.35817 1.48129 1.77163 1.90007 1.94887 2.31997 2.33692 2.93418 3.42092 3.76719 3.81730 3.91389 3.95284 4.02914 4.20014 4.25366 4.29151 4.34005 4.38038 4.40744 4.56262 4.59848 4.65313 4.72267 4.73124 4.79607 4.85398 4.87722 4.89135 4.92095 4.95323 4.99163 5.04583 5.08496 5.14381 5.16285 5.24014 5.32371 5.35822 5.45357 5.46196 5.50070 5.56876 5.63128 5.79571 6.06589 6.32336 6.62070 6.63202 6.77998 7.12516 7.17926 7.38616 8.70119 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002332 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.912706 B =12002.472829 C =12759.828663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.118 3.882 4 H 0.079 0.921 5 N -0.716 5.716 6 C 0.519 3.481 7 O -0.567 6.567 8 C -0.127 4.127 9 C -0.003 4.003 10 C -0.257 4.257 11 C 0.053 3.947 12 C -0.062 4.062 13 N -0.352 5.352 14 N -0.356 5.356 15 C 0.275 3.725 16 C -0.552 4.552 17 H 0.046 0.954 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.266 1.266 23 H -0.274 1.274 24 C 0.078 3.922 25 C -0.082 4.082 26 C 0.096 3.904 27 H 0.110 0.890 28 C -0.172 4.172 29 O -0.568 6.568 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.414 0.586 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.047 0.953 45 H 0.274 0.726 46 H 0.074 0.926 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.051 0.949 52 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -21.185 17.455 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.013 3.987 4 H 0.098 0.902 5 N -0.370 5.370 6 C 0.307 3.693 7 O -0.446 6.446 8 C -0.167 4.167 9 C -0.042 4.042 10 C -0.268 4.268 11 C -0.112 4.112 12 C -0.121 4.121 13 N -0.175 5.175 14 N -0.136 5.136 15 C 0.156 3.844 16 C -0.590 4.590 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.190 1.190 23 H -0.199 1.199 24 C -0.052 4.052 25 C -0.140 4.140 26 C 0.036 3.964 27 H 0.128 0.872 28 C -0.230 4.230 29 O -0.375 6.375 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.251 0.749 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.021 -20.468 17.344 26.828 hybrid contribution 0.235 1.244 -0.680 1.437 sum 0.256 -19.224 16.664 25.442 Atomic orbital electron populations 1.21772 0.95186 1.02112 1.01851 1.21673 0.96171 0.93706 1.04115 1.21706 0.94600 0.94489 0.87927 0.90248 1.45999 1.70495 1.06551 1.13940 1.20885 0.75581 0.82421 0.90434 1.90709 1.50955 1.64944 1.37977 1.21639 1.04802 0.95363 0.94911 1.19348 1.01476 0.92188 0.91153 1.19737 0.91039 1.15501 1.00559 1.22793 0.97384 0.97928 0.93061 1.20203 0.90579 1.02510 0.98766 1.77211 0.97870 1.24953 1.17498 1.48997 1.03343 1.43818 1.17446 1.19119 0.93820 0.92802 0.78676 1.21449 1.45506 0.93725 0.98297 0.93602 1.25740 0.94195 1.03737 0.94250 1.70006 1.44295 1.38241 1.03074 0.85319 0.78564 0.78502 0.78164 1.19971 1.19047 1.19896 1.21467 0.96302 0.97514 0.89914 1.20436 0.86387 1.03987 1.03209 1.22348 0.91530 0.91823 0.90713 0.87248 1.22459 1.00685 0.97116 1.02752 1.86542 1.76516 1.56891 1.17521 0.91786 0.93399 0.92559 0.90185 0.89986 0.74944 0.87574 0.87860 0.91914 0.91218 0.89017 0.89044 0.91846 0.96325 0.93480 0.91723 0.90734 0.87411 0.91904 0.92186 0.92898 0.93046 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.80 71.98 0.71 -0.63 16 2 C -0.12 -1.01 5.26 30.59 0.16 -0.85 16 3 C 0.12 1.41 2.09 44.99 0.09 1.51 16 4 H 0.08 1.27 7.58 -2.39 -0.02 1.25 16 5 N -0.72 -7.99 3.84 -442.54 -1.70 -9.69 16 6 C 0.52 9.09 6.18 87.65 0.54 9.63 16 7 O -0.57 -14.19 13.11 -3.01 -0.04 -14.23 16 8 C -0.13 -2.22 5.68 29.85 0.17 -2.06 16 9 C 0.00 -0.07 4.41 29.85 0.13 0.07 16 10 C -0.26 -8.60 5.35 -20.14 -0.11 -8.71 16 11 C 0.05 1.94 7.22 43.10 0.31 2.25 16 12 C -0.06 -1.60 10.26 71.24 0.73 -0.87 16 13 N -0.35 -16.39 12.58 -47.38 -0.60 -16.98 16 14 N -0.36 -16.97 3.60 -338.41 -1.22 -18.19 16 15 C 0.28 14.71 6.00 85.64 0.51 15.22 16 16 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 17 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 18 C 0.02 1.20 5.46 84.66 0.46 1.67 16 19 N -0.92 -52.35 13.29 21.45 0.28 -52.07 16 20 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.08 3.02 6.93 41.41 0.29 3.30 16 25 C -0.08 -2.58 9.72 71.24 0.69 -1.89 16 26 C 0.10 1.31 3.44 30.59 0.11 1.41 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 C -0.17 -3.08 8.06 71.98 0.58 -2.50 16 29 O -0.57 -7.95 12.76 -148.98 -1.90 -9.85 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.50 7.75 -2.38 -0.02 0.48 16 33 H 0.08 0.62 7.84 -2.39 -0.02 0.60 16 34 H 0.08 0.64 8.14 -2.38 -0.02 0.63 16 35 H 0.41 2.58 8.60 -92.70 -0.80 1.79 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.66 7.75 -2.39 -0.02 1.64 16 39 H 0.07 1.76 7.21 -2.39 -0.02 1.75 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 1.95 7.25 -2.39 -0.02 1.93 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 45 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.11 2.50 7.79 -2.38 -0.02 2.48 16 48 H 0.06 2.08 7.07 -2.39 -0.02 2.07 16 49 H 0.06 1.24 7.53 -2.39 -0.02 1.23 16 50 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.05 1.01 5.78 -2.39 -0.01 0.99 16 52 H 0.38 3.67 8.49 -74.06 -0.63 3.04 16 Total: -1.00 -72.44 418.64 1.98 -70.46 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.50 Total: 18.48 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.62 Total: -13.67 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.22 Total: -96.93 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.94 Total: -24.08 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.44 1.98 -70.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412935123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.580 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds