Wall clock time and date at job start Tue Mar 31 2020 20:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52992 * 109.47381 * 120.00294 * 2 1 3 5 5 H 1.09002 * 115.55160 * 28.91561 * 4 2 1 6 6 C 1.53079 * 117.51339 * 243.19523 * 4 2 1 7 7 C 1.52997 * 59.98564 * 252.52051 * 6 4 2 8 8 H 1.09008 * 117.49951 * 252.50311 * 7 6 4 9 9 C 1.50701 * 117.50085 * 107.49706 * 7 6 4 10 10 O 1.21280 * 120.00266 * 267.07785 * 9 7 6 11 11 N 1.34779 * 119.99387 * 87.07610 * 9 7 6 12 12 C 1.46497 * 119.99514 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47028 * 179.97438 * 12 11 9 14 14 H 1.08999 * 112.85274 * 316.19408 * 13 12 11 15 15 C 1.53781 * 113.61407 * 87.50267 * 13 12 11 16 16 C 1.53780 * 87.08309 * 139.98102 * 15 13 12 17 17 H 1.08999 * 113.69105 * 89.13113 * 16 15 13 18 18 N 1.46902 * 113.61563 * 220.01878 * 16 15 13 19 19 C 1.46897 * 110.99988 * 252.50133 * 18 16 15 20 20 C 1.50700 * 109.47242 * 180.02562 * 19 18 16 21 21 O 1.21295 * 119.99781 * 359.97438 * 20 19 18 22 22 N 1.34771 * 120.00229 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00435 * 179.97438 * 22 20 19 24 24 H 1.08002 * 119.99760 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00490 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99780 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 119.99739 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47038 * 89.99878 * 27 25 23 29 29 H 1.48501 * 109.47150 * 209.99789 * 27 25 23 30 30 H 1.48496 * 109.47569 * 330.00317 * 27 25 23 31 31 C 1.53773 * 87.08033 * 334.56540 * 16 15 13 32 32 H 1.09003 * 109.47035 * 297.34566 * 1 2 3 33 33 H 1.09000 * 109.47044 * 57.34144 * 1 2 3 34 34 H 1.09000 * 109.47207 * 177.34944 * 1 2 3 35 35 H 1.09001 * 109.47250 * 240.00278 * 2 1 3 36 36 H 1.09002 * 109.47052 * 186.62004 * 3 2 1 37 37 H 1.08998 * 109.47461 * 306.61602 * 3 2 1 38 38 H 1.09001 * 109.47043 * 66.62189 * 3 2 1 39 39 H 1.09006 * 117.51282 * 145.04122 * 6 4 2 40 40 H 1.09000 * 117.49560 * 0.02562 * 6 4 2 41 41 H 0.96998 * 120.00343 * 0.02562 * 11 9 7 42 42 H 1.09000 * 109.47136 * 299.99461 * 12 11 9 43 43 H 1.09001 * 109.47471 * 60.00175 * 12 11 9 44 44 H 1.09001 * 113.61672 * 254.53008 * 15 13 12 45 45 H 1.09000 * 113.61651 * 25.43195 * 15 13 12 46 46 H 1.00904 * 110.99588 * 16.44835 * 18 16 15 47 47 H 1.09001 * 109.46741 * 299.99702 * 19 18 16 48 48 H 1.09000 * 109.47677 * 59.99419 * 19 18 16 49 49 H 0.97002 * 120.00365 * 359.97438 * 22 20 19 50 50 H 0.97002 * 119.99211 * 179.97438 * 26 25 23 51 51 H 1.08998 * 113.62154 * 270.88500 * 31 16 15 52 52 H 1.09004 * 113.68844 * 139.98804 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.3852 -1.4982 1.6437 6 6 2.8530 0.0968 2.2557 7 6 3.5494 -0.9399 1.3719 8 1 3.8875 -1.8608 1.8472 9 6 4.4198 -0.4285 0.2531 10 8 3.9547 -0.2781 -0.8569 11 7 5.7152 -0.1381 0.4860 12 6 6.5612 0.3596 -0.6015 13 6 7.9755 0.6094 -0.0739 14 1 7.9839 1.1120 0.8933 15 6 8.8832 -0.6305 -0.1338 16 6 10.0129 0.3149 -0.5753 17 1 10.5803 0.7367 0.2543 18 7 10.8717 -0.2452 -1.6273 19 6 12.1894 -0.6119 -1.0915 20 6 13.0407 -1.1808 -2.1972 21 8 12.5935 -1.2723 -3.3210 22 7 14.2989 -1.5880 -1.9374 23 6 15.0732 -2.1061 -2.9432 24 1 14.6747 -2.1883 -3.9436 25 6 16.3706 -2.5254 -2.6755 26 7 17.1126 -3.0225 -3.6395 27 14 17.0600 -2.3826 -0.9453 28 1 16.7670 -3.6279 -0.1913 29 1 18.5295 -2.1792 -1.0132 30 1 16.4317 -1.2272 -0.2559 31 6 8.9151 1.2500 -1.1092 32 1 -0.3633 0.4721 0.9128 33 1 -0.3633 0.5546 -0.8652 34 1 -0.3633 -1.0266 -0.0475 35 1 1.8934 -0.5138 -0.8900 36 1 3.1235 1.4448 -0.1185 37 1 1.5832 1.9894 -0.8248 38 1 1.7766 1.9210 0.9433 39 1 2.7329 -0.1419 3.3125 40 1 3.0239 1.1490 2.0278 41 1 6.0873 -0.2587 1.3736 42 1 6.5969 -0.3797 -1.4016 43 1 6.1475 1.2918 -0.9862 44 1 9.0556 -1.0929 0.8381 45 1 8.5910 -1.3490 -0.8996 46 1 10.4296 -1.0356 -2.0722 47 1 12.6734 0.2738 -0.6798 48 1 12.0676 -1.3576 -0.3058 49 1 14.6567 -1.5145 -1.0388 50 1 18.0184 -3.3149 -3.4527 51 1 8.6314 1.0457 -2.1416 52 1 9.1119 2.3063 -0.9254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479329294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:35 Heat of formation + Delta-G solvation = -28.802975 kcal Electronic energy + Delta-G solvation = -28308.307197 eV Core-core repulsion = 24309.126088 eV Total energy + Delta-G solvation = -3999.181109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80454 -39.63934 -38.29718 -37.60764 -35.12199 -34.11829 -33.57019 -33.10114 -31.65057 -28.64837 -27.50482 -26.59565 -25.83005 -24.44328 -23.89591 -23.64478 -21.61054 -20.72023 -19.92911 -19.50790 -19.23976 -18.27731 -17.42257 -16.61144 -16.11276 -16.03401 -15.72257 -15.37382 -15.28716 -14.83206 -14.75637 -14.61628 -14.17265 -13.91352 -13.50050 -13.39000 -13.12303 -13.01826 -12.73167 -12.65463 -12.58958 -12.48405 -12.19975 -12.04776 -11.84971 -11.67275 -11.65457 -11.29196 -11.19526 -11.16854 -11.08184 -10.80362 -10.64404 -10.61081 -10.52115 -10.41085 -9.97723 -9.70354 -9.57765 -9.30864 -8.57850 -8.19394 -8.08932 -6.31411 -3.82815 2.26809 2.79545 3.01755 3.05549 3.14128 3.30255 3.73917 4.07199 4.10591 4.12666 4.29107 4.33107 4.37888 4.46035 4.59870 4.65540 4.74076 4.79211 4.92089 4.92330 5.02015 5.03527 5.18682 5.21448 5.22424 5.31606 5.38944 5.42131 5.47702 5.54698 5.61078 5.61650 5.64374 5.65385 5.67548 5.70204 5.76193 5.88129 5.90605 5.92532 5.97131 6.05521 6.15475 6.22096 6.29810 7.15578 7.18994 7.57067 7.59169 7.95267 8.14497 8.59569 8.94830 9.42196 9.82623 10.81782 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031264 B = 0.001498 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.382019 B =18682.362441 C =18849.215963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.149 4.149 4 C -0.110 4.110 5 H 0.111 0.889 6 C -0.163 4.163 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.541 3.459 10 O -0.527 6.527 11 N -0.726 5.726 12 C 0.131 3.869 13 C -0.124 4.124 14 H 0.094 0.906 15 C -0.165 4.165 16 C 0.068 3.932 17 H 0.095 0.905 18 N -0.657 5.657 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.565 6.565 22 N -0.591 5.591 23 C -0.306 4.306 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 C -0.116 4.116 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.400 0.600 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.353 0.647 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 7.688 18.241 34.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.206 4.206 4 C -0.129 4.129 5 H 0.129 0.871 6 C -0.200 4.200 7 C -0.214 4.214 8 H 0.144 0.856 9 C 0.327 3.673 10 O -0.404 6.404 11 N -0.377 5.377 12 C 0.008 3.992 13 C -0.143 4.143 14 H 0.112 0.888 15 C -0.204 4.204 16 C -0.043 4.043 17 H 0.113 0.887 18 N -0.289 5.289 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.446 6.446 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 C -0.155 4.155 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.234 0.766 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.174 0.826 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.109 0.891 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.901 8.248 16.321 34.201 hybrid contribution 0.893 -0.928 2.444 2.762 sum -28.008 7.320 18.764 34.498 Atomic orbital electron populations 1.21854 0.95452 1.01448 1.01523 1.20744 0.94609 0.96143 0.97274 1.22067 1.02093 0.95735 1.00682 1.22488 0.90789 1.01442 0.98176 0.87140 1.23280 1.02633 0.97425 0.96685 1.22261 0.95830 1.02474 1.00790 0.85614 1.19658 0.81791 0.76998 0.88803 1.90687 1.73063 1.52275 1.24384 1.46041 1.10303 1.67473 1.13889 1.21393 0.88766 0.99596 0.89492 1.22659 0.92563 0.98732 1.00396 0.88752 1.23845 0.97593 0.96811 1.02157 1.22994 0.91672 0.95983 0.93636 0.88658 1.60008 1.02439 1.38345 1.28060 1.21747 0.91084 0.99842 0.95838 1.19749 0.82957 0.84038 0.89801 1.90570 1.72484 1.58497 1.23099 1.42209 1.12617 1.57420 1.10787 1.19443 0.94475 1.36898 0.92619 0.86289 1.25038 0.96028 0.97243 0.97836 1.69626 1.09549 1.41198 1.31756 0.86666 0.79709 0.78654 0.84318 1.19690 1.20159 1.19494 1.23056 0.94146 0.99147 0.99169 0.93005 0.92674 0.92876 0.88451 0.91924 0.93014 0.93317 0.88073 0.87605 0.76588 0.91104 0.91382 0.91582 0.89513 0.82604 0.89540 0.93769 0.79714 0.91622 0.89060 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.15 37.16 0.34 -0.61 16 2 C -0.07 -0.56 2.43 -90.62 -0.22 -0.78 16 3 C -0.15 -1.23 7.41 37.16 0.28 -0.95 16 4 C -0.11 -0.73 5.73 -90.58 -0.52 -1.25 16 5 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16 6 C -0.16 -0.86 9.25 -26.69 -0.25 -1.10 16 7 C -0.19 -1.25 6.18 -91.77 -0.57 -1.82 16 8 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 9 C 0.54 4.87 6.14 -10.98 -0.07 4.80 16 10 O -0.53 -6.54 12.25 5.56 0.07 -6.47 16 11 N -0.73 -5.21 5.56 -60.29 -0.33 -5.54 16 12 C 0.13 1.08 5.51 -4.04 -0.02 1.06 16 13 C -0.12 -0.90 3.76 -89.80 -0.34 -1.24 16 14 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 15 C -0.16 -1.42 7.25 -25.92 -0.19 -1.61 16 16 C 0.07 0.72 4.18 -66.90 -0.28 0.44 16 17 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16 18 N -0.66 -9.82 6.24 -107.14 -0.67 -10.49 16 19 C 0.05 0.77 6.01 -4.98 -0.03 0.74 16 20 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16 21 O -0.56 -15.24 15.78 5.54 0.09 -15.15 16 22 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 23 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 24 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 25 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 26 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 27 Si 0.88 19.28 27.73 -169.99 -4.71 14.56 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 31 C -0.12 -1.08 7.44 -25.92 -0.19 -1.28 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 1.03 6.42 -51.93 -0.33 0.70 16 36 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.34 6.78 -51.93 -0.35 -0.01 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.61 5.80 -51.93 -0.30 0.31 16 41 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 42 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 46 H 0.35 5.54 7.90 -39.29 -0.31 5.23 16 47 H 0.09 1.26 8.13 -51.93 -0.42 0.83 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 52 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -33.92 410.21 -9.86 -43.78 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -8.81 Total: 13.56 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.39 Total: -1.31 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.29 Total: -55.15 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.16 Total: -21.62 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.92 -9.86 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479329294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.977 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds