Wall clock time and date at job start Tue Mar 31 2020 20:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.52995 * 109.47132 * 119.99949 * 2 1 3 5 5 H 1.09003 * 115.54961 * 325.66887 * 4 2 1 6 6 C 1.52999 * 117.51681 * 111.36808 * 4 2 1 7 7 C 1.53000 * 117.49923 * 179.97438 * 4 2 1 8 8 H 1.08996 * 117.49449 * 0.02562 * 7 4 2 9 9 C 1.50700 * 117.49698 * 144.99598 * 7 4 2 10 10 O 1.21280 * 120.00158 * 0.02562 * 9 7 4 11 11 N 1.34775 * 119.99873 * 179.97438 * 9 7 4 12 12 C 1.46493 * 120.00171 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47200 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.84641 * 316.19436 * 13 12 11 15 15 C 1.53950 * 113.74444 * 87.40654 * 13 12 11 16 16 C 1.53781 * 87.02165 * 139.94260 * 15 13 12 17 17 H 1.09005 * 113.61256 * 89.22670 * 16 15 13 18 18 N 1.46896 * 113.61509 * 220.04372 * 16 15 13 19 19 C 1.46899 * 111.00338 * 254.13487 * 18 16 15 20 20 C 1.50698 * 109.46987 * 179.97438 * 19 18 16 21 21 O 1.21293 * 120.00006 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37104 * 119.99773 * 179.72591 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.27660 * 23 22 20 25 25 C 1.38950 * 120.00030 * 180.27703 * 23 22 20 26 26 N 1.31414 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99969 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47425 * 90.00231 * 27 25 23 29 29 H 1.48499 * 109.47218 * 210.00087 * 27 25 23 30 30 H 1.48505 * 109.47256 * 330.00093 * 27 25 23 31 31 C 1.53780 * 87.17197 * 334.63724 * 16 15 13 32 32 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47246 * 300.00098 * 1 2 3 34 34 H 1.09000 * 109.47172 * 60.00072 * 1 2 3 35 35 H 1.09003 * 109.46586 * 240.00196 * 2 1 3 36 36 H 1.08996 * 109.46710 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47149 * 299.99942 * 3 2 1 38 38 H 1.08999 * 109.47251 * 59.99905 * 3 2 1 39 39 H 1.08993 * 117.50293 * 359.97438 * 6 4 2 40 40 H 1.09007 * 117.50094 * 214.96875 * 6 4 2 41 41 H 0.97005 * 119.99847 * 0.02562 * 11 9 7 42 42 H 1.08996 * 109.47060 * 60.00921 * 12 11 9 43 43 H 1.08996 * 109.47292 * 300.00510 * 12 11 9 44 44 H 1.08997 * 113.61178 * 25.41996 * 15 13 12 45 45 H 1.08997 * 113.66243 * 254.47189 * 15 13 12 46 46 H 1.00900 * 110.99693 * 130.18013 * 18 16 15 47 47 H 1.09003 * 109.46477 * 60.00383 * 19 18 16 48 48 H 1.08993 * 109.47002 * 300.00709 * 19 18 16 49 49 H 0.97001 * 120.00485 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99863 * 180.02562 * 26 25 23 51 51 H 1.08998 * 113.61287 * 139.93651 * 31 16 15 52 52 H 1.09000 * 113.61332 * 270.75679 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4311 -0.5979 2.1448 6 6 2.7418 -2.0664 1.0518 7 6 3.5550 -0.8286 1.4340 8 1 4.1883 -0.3850 0.6657 9 6 4.0914 -0.7552 2.8404 10 8 3.3293 -0.6164 3.7736 11 7 5.4179 -0.8448 3.0612 12 6 5.9394 -0.7729 4.4282 13 6 7.4640 -0.8989 4.3998 14 1 7.8114 -1.6832 3.7273 15 6 8.1935 0.4432 4.2080 16 6 9.2188 -0.0584 5.2385 17 1 10.0466 -0.6129 4.7965 18 7 9.6644 0.9791 6.1782 19 6 11.0289 1.4231 5.8640 20 6 11.4503 2.4853 6.8464 21 8 10.6889 2.8375 7.7225 22 7 12.6735 3.0432 6.7522 23 6 13.0548 4.0136 7.6425 24 1 12.3765 4.3277 8.4221 25 6 14.3138 4.5929 7.5419 26 7 15.1388 4.2110 6.5930 27 14 14.8335 5.9145 8.7553 28 1 15.4919 5.2807 9.9257 29 1 15.7846 6.8452 8.0963 30 1 13.6370 6.6684 9.2087 31 6 8.1034 -0.9577 5.7972 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 2.8399 -2.4380 0.0319 40 1 2.5946 -2.8280 1.8176 41 1 6.0274 -0.9562 2.3148 42 1 5.5185 -1.5851 5.0209 43 1 5.6624 0.1829 4.8730 44 1 7.6188 1.3049 4.5475 45 1 8.6082 0.5768 3.2088 46 1 9.6000 0.6551 7.1316 47 1 11.0543 1.8322 4.8540 48 1 11.7110 0.5755 5.9299 49 1 13.2826 2.7613 6.0518 50 1 16.0178 4.6151 6.5229 51 1 8.4456 -1.9534 6.0792 52 1 7.5051 -0.4802 6.5731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479329296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:40 Heat of formation + Delta-G solvation = -48.620129 kcal Electronic energy + Delta-G solvation = -27783.541029 eV Core-core repulsion = 23783.500584 eV Total energy + Delta-G solvation = -4000.040445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.45813 -39.43227 -38.12650 -37.75897 -35.06134 -34.03541 -33.72709 -33.15917 -31.19689 -28.61144 -27.56904 -26.49640 -25.77271 -24.55431 -23.78854 -23.26403 -21.54056 -20.69422 -20.10126 -19.63452 -19.07212 -17.86950 -17.57825 -16.59867 -16.04202 -15.78897 -15.62925 -15.25302 -15.08458 -14.92311 -14.52613 -14.31073 -14.23778 -13.82702 -13.63260 -13.52831 -13.38459 -13.02793 -12.84750 -12.57762 -12.50624 -12.40621 -12.27332 -11.73988 -11.63244 -11.57116 -11.52984 -11.48679 -11.09711 -11.05368 -10.94798 -10.77794 -10.64992 -10.47788 -10.39030 -10.35319 -10.20787 -9.99854 -9.50425 -9.28866 -8.43597 -8.06236 -7.95175 -6.41312 -3.82080 2.23610 2.84102 3.18257 3.26872 3.33151 3.42265 3.91761 4.10778 4.12304 4.29895 4.32405 4.35530 4.40054 4.54571 4.60776 4.71496 4.75607 4.79379 4.85176 4.90326 5.03954 5.14824 5.20797 5.24851 5.27257 5.28960 5.29165 5.43797 5.48572 5.49291 5.53432 5.63042 5.68458 5.68979 5.73463 5.78073 5.81912 5.88529 5.93200 5.95958 6.01145 6.10888 6.20559 6.25487 6.39095 7.23971 7.30058 7.55709 7.68124 7.98636 8.07104 8.61957 9.18502 9.54997 10.06591 10.76462 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.001448 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.197751 B =19326.300545 C =19994.014090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.111 4.111 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.541 6.541 11 N -0.724 5.724 12 C 0.131 3.869 13 C -0.125 4.125 14 H 0.093 0.907 15 C -0.121 4.121 16 C 0.059 3.941 17 H 0.070 0.930 18 N -0.656 5.656 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 C -0.131 4.131 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.350 0.650 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.068 0.932 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.466 -15.149 -16.977 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.130 4.130 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.211 4.211 8 H 0.141 0.859 9 C 0.327 3.673 10 O -0.418 6.418 11 N -0.375 5.375 12 C 0.008 3.992 13 C -0.144 4.144 14 H 0.112 0.888 15 C -0.159 4.159 16 C -0.051 4.051 17 H 0.088 0.912 18 N -0.289 5.289 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 C -0.169 4.169 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.171 0.829 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.605 -14.210 -16.054 31.155 hybrid contribution 1.855 -0.306 0.011 1.880 sum -20.750 -14.515 -16.043 29.977 Atomic orbital electron populations 1.21807 0.94528 1.01913 1.02003 1.20749 0.96081 0.96085 0.95607 1.21834 1.01135 0.95538 1.01986 1.22484 0.91817 0.98288 1.00417 0.86433 1.23079 1.01747 0.90908 1.02908 1.22270 0.96516 1.06437 0.95909 0.85918 1.19671 0.82138 0.75756 0.89736 1.90708 1.57302 1.49095 1.44742 1.45941 1.07156 1.74561 1.09821 1.21392 0.92576 1.02482 0.82742 1.22676 0.93188 0.99551 0.99012 0.88841 1.23218 0.97364 0.96450 0.98854 1.22976 0.95293 0.91809 0.95064 0.91220 1.60235 1.23341 1.38391 1.06901 1.21726 0.89363 0.97285 0.99886 1.19844 0.83328 0.86307 0.87942 1.90524 1.52925 1.65520 1.37758 1.41870 1.13116 1.35305 1.29804 1.19717 0.99436 1.13812 1.09944 0.87926 1.25255 0.95824 0.99040 0.97800 1.69615 1.08642 1.43567 1.32556 0.85857 0.78540 0.80132 0.79763 1.20433 1.20927 1.19402 1.23173 0.97553 0.99883 0.96308 0.92510 0.92393 0.92509 0.91057 0.92618 0.92574 0.92324 0.87817 0.88319 0.76499 0.91531 0.90916 0.88867 0.91830 0.82919 0.89707 0.93931 0.77483 0.91903 0.91295 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.18 37.16 0.34 -0.42 16 2 C -0.07 -0.38 3.07 -90.62 -0.28 -0.66 16 3 C -0.15 -0.90 9.03 37.16 0.34 -0.56 16 4 C -0.11 -0.80 4.66 -90.62 -0.42 -1.22 16 5 H 0.12 1.08 7.64 -51.93 -0.40 0.68 16 6 C -0.15 -0.89 9.88 -26.75 -0.26 -1.15 16 7 C -0.19 -1.35 5.39 -91.79 -0.49 -1.85 16 8 H 0.12 0.65 7.61 -51.93 -0.40 0.26 16 9 C 0.54 5.51 7.61 -10.99 -0.08 5.43 16 10 O -0.54 -7.78 16.26 5.56 0.09 -7.69 16 11 N -0.72 -5.94 5.56 -60.30 -0.33 -6.27 16 12 C 0.13 1.22 5.52 -4.04 -0.02 1.20 16 13 C -0.13 -1.03 3.75 -89.71 -0.34 -1.36 16 14 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.12 -1.25 7.45 -25.83 -0.19 -1.44 16 16 C 0.06 0.69 4.12 -66.90 -0.28 0.41 16 17 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 18 N -0.66 -10.45 6.18 -107.13 -0.66 -11.11 16 19 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 20 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 21 O -0.58 -16.00 15.78 5.55 0.09 -15.92 16 22 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 23 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 24 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 27 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 C -0.13 -1.25 7.23 -25.92 -0.19 -1.44 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.35 7.90 -51.93 -0.41 -0.07 16 36 H 0.05 0.34 7.29 -51.93 -0.38 -0.04 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.43 8.05 -51.93 -0.42 0.01 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.40 2.24 8.47 -40.82 -0.35 1.90 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.81 7.86 -51.93 -0.41 0.41 16 44 H 0.09 1.16 7.91 -51.93 -0.41 0.74 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.35 5.78 8.26 -39.29 -0.32 5.46 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 49 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.99 8.10 -51.93 -0.42 0.56 16 LS Contribution 426.91 15.07 6.43 6.43 Total: -1.00 -33.45 426.91 -10.20 -43.66 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -9.22 Total: 12.99 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.24 Total: 0.11 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.33 Total: -55.71 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.18 Total: -23.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.45 -10.20 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479329296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.964 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds