Wall clock time and date at job start Tue Mar 31 2020 20:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 C 1.52994 * 109.47160 * 120.00231 * 2 1 3 5 5 H 1.09011 * 115.56160 * 211.51994 * 4 2 1 6 6 C 1.53070 * 117.51595 * 357.22501 * 4 2 1 7 7 C 1.53001 * 117.50138 * 65.83655 * 4 2 1 8 8 H 1.08990 * 117.50129 * 144.99609 * 7 4 2 9 9 C 1.50701 * 117.49632 * 359.97438 * 7 4 2 10 10 O 1.21286 * 119.99695 * 35.59190 * 9 7 4 11 11 N 1.34774 * 120.00165 * 215.58630 * 9 7 4 12 12 C 1.46503 * 119.99835 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46732 * 179.97438 * 12 11 9 14 14 H 1.08993 * 112.90581 * 316.25225 * 13 12 11 15 15 C 1.53777 * 113.61085 * 87.50524 * 13 12 11 16 16 C 1.53782 * 87.08303 * 139.97811 * 15 13 12 17 17 H 1.08998 * 113.68871 * 89.12031 * 16 15 13 18 18 N 1.46894 * 113.61618 * 220.01793 * 16 15 13 19 19 C 1.46898 * 110.99669 * 252.49573 * 18 16 15 20 20 C 1.50704 * 109.46793 * 180.02562 * 19 18 16 21 21 O 1.21289 * 120.00225 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00353 * 179.97438 * 22 20 19 24 24 H 1.07996 * 120.00187 * 0.02562 * 23 22 20 25 25 C 1.38957 * 120.00235 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99543 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00039 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47136 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47201 * 120.00145 * 27 25 23 30 30 H 1.48500 * 109.47219 * 240.00024 * 27 25 23 31 31 C 1.53782 * 113.61031 * 185.00053 * 13 12 11 32 32 H 1.09006 * 109.47402 * 295.53391 * 1 2 3 33 33 H 1.09003 * 109.47674 * 55.53145 * 1 2 3 34 34 H 1.08999 * 109.47719 * 175.53450 * 1 2 3 35 35 H 1.09000 * 109.47008 * 240.00336 * 2 1 3 36 36 H 1.08997 * 109.47144 * 295.13370 * 3 2 1 37 37 H 1.08996 * 109.47310 * 55.13268 * 3 2 1 38 38 H 1.09005 * 109.47055 * 175.13804 * 3 2 1 39 39 H 1.09008 * 117.51123 * 0.02562 * 6 4 2 40 40 H 1.08997 * 117.51396 * 214.95983 * 6 4 2 41 41 H 0.97005 * 120.00162 * 0.02562 * 11 9 7 42 42 H 1.09000 * 109.47200 * 60.00240 * 12 11 9 43 43 H 1.08989 * 109.47221 * 299.99478 * 12 11 9 44 44 H 1.09004 * 113.61337 * 254.52788 * 15 13 12 45 45 H 1.09003 * 113.61845 * 25.42942 * 15 13 12 46 46 H 1.00897 * 111.00260 * 128.54099 * 18 16 15 47 47 H 1.09002 * 109.47577 * 299.99685 * 19 18 16 48 48 H 1.09002 * 109.47466 * 60.00433 * 19 18 16 49 49 H 0.97011 * 119.99734 * 359.97438 * 22 20 19 50 50 H 0.96999 * 119.99663 * 179.97438 * 26 25 23 51 51 H 1.08998 * 113.61281 * 334.56608 * 31 13 12 52 52 H 1.08999 * 113.61194 * 105.39302 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.9871 -0.3581 1.6483 6 6 0.9972 -1.2238 2.2508 7 6 1.7517 -2.2192 1.3672 8 1 2.5091 -2.8415 1.8436 9 6 0.9866 -2.8712 0.2444 10 8 1.1602 -2.5068 -0.8993 11 7 0.1096 -3.8592 0.5111 12 6 -0.6337 -4.4933 -0.5805 13 6 -1.5534 -5.5751 -0.0103 14 1 -1.0655 -6.1923 0.7440 15 6 -2.9310 -5.0467 0.4230 16 6 -3.5245 -6.3351 -0.1709 17 1 -3.5762 -7.1609 0.5385 18 7 -4.7861 -6.1234 -0.8930 19 6 -5.9244 -6.6534 -0.1304 20 6 -7.1980 -6.4191 -0.9012 21 8 -7.1612 -5.8648 -1.9794 22 7 -8.3782 -6.8246 -0.3920 23 6 -9.5369 -6.6111 -1.0929 24 1 -9.5040 -6.1183 -2.0533 25 6 -10.7536 -7.0297 -0.5681 26 7 -10.7935 -7.6297 0.6003 27 14 -12.3322 -6.7393 -1.5235 28 1 -12.0182 -6.0503 -2.8009 29 1 -12.9833 -8.0425 -1.8116 30 1 -13.2503 -5.8948 -0.7177 31 6 -2.2911 -6.3871 -1.0879 32 1 -0.3634 0.4430 0.9273 33 1 -0.3634 0.5816 -0.8472 34 1 -0.3634 -1.0245 -0.0800 35 1 1.8932 -0.5138 -0.8900 36 1 1.7495 1.9305 -0.9303 37 1 1.6072 1.9809 0.8431 38 1 3.1265 1.4437 0.0871 39 1 -0.0522 -1.0408 2.0197 40 1 1.2584 -1.1911 3.3085 41 1 -0.0295 -4.1504 1.4259 42 1 0.0669 -4.9455 -1.2825 43 1 -1.2319 -3.7426 -1.0968 44 1 -3.0488 -4.9694 1.5039 45 1 -3.2369 -4.1422 -0.1029 46 1 -4.7476 -6.5308 -1.8152 47 1 -5.7884 -7.7230 0.0294 48 1 -5.9839 -6.1467 0.8329 49 1 -8.4077 -7.2676 0.4706 50 1 -11.6428 -7.9216 0.9669 51 1 -2.4220 -5.8491 -2.0267 52 1 -1.8914 -7.3915 -1.2277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479329297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:43 Heat of formation + Delta-G solvation = -39.282973 kcal Electronic energy + Delta-G solvation = -28464.219742 eV Core-core repulsion = 24464.584187 eV Total energy + Delta-G solvation = -3999.635556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70470 -39.48519 -38.11190 -37.57093 -35.04500 -34.05958 -33.50547 -33.04294 -31.20002 -28.52602 -27.47102 -26.47323 -25.76824 -24.46694 -23.83023 -23.72261 -21.54656 -20.57748 -19.74687 -19.43257 -19.04059 -17.87141 -17.36144 -16.56665 -16.18974 -15.97175 -15.66869 -15.26223 -15.20526 -14.69869 -14.64053 -14.43849 -14.26372 -13.85442 -13.48928 -13.37481 -13.30912 -13.00594 -12.67397 -12.50470 -12.39815 -12.27895 -12.00412 -11.75436 -11.59723 -11.53490 -11.49991 -11.26599 -11.12910 -11.07364 -10.94240 -10.78349 -10.61428 -10.36193 -10.34571 -10.33893 -10.21615 -9.70991 -9.51942 -9.25659 -8.43959 -8.06453 -7.95621 -6.41856 -3.82486 2.36521 2.84396 3.16394 3.26954 3.32938 3.34483 3.91309 4.10464 4.17686 4.29613 4.35742 4.41142 4.45495 4.57714 4.69056 4.74795 4.75679 4.83866 4.95910 5.04108 5.06893 5.20500 5.24433 5.28440 5.29090 5.36813 5.45415 5.51037 5.52129 5.62629 5.66555 5.67591 5.70179 5.74537 5.77702 5.81528 5.92779 5.94690 5.95988 6.06677 6.13383 6.19704 6.23137 6.30800 6.39103 7.25516 7.29720 7.55541 7.67706 8.01143 8.06906 8.61488 9.18195 9.54625 10.06150 10.76005 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.001634 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.689255 B =17134.290607 C =17823.514185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.144 4.144 4 C -0.111 4.111 5 H 0.111 0.889 6 C -0.166 4.166 7 C -0.191 4.191 8 H 0.127 0.873 9 C 0.543 3.457 10 O -0.531 6.531 11 N -0.725 5.725 12 C 0.132 3.868 13 C -0.125 4.125 14 H 0.093 0.907 15 C -0.120 4.120 16 C 0.059 3.941 17 H 0.071 0.929 18 N -0.656 5.656 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.583 6.583 22 N -0.565 5.565 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 C -0.132 4.132 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.350 0.650 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.093 0.907 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.056 8.012 7.153 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.201 4.201 4 C -0.129 4.129 5 H 0.129 0.871 6 C -0.203 4.203 7 C -0.212 4.212 8 H 0.145 0.855 9 C 0.329 3.671 10 O -0.408 6.408 11 N -0.377 5.377 12 C 0.008 3.992 13 C -0.144 4.144 14 H 0.112 0.888 15 C -0.158 4.158 16 C -0.051 4.051 17 H 0.089 0.911 18 N -0.289 5.289 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 C -0.170 4.170 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.112 0.888 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.922 9.204 5.892 29.056 hybrid contribution -0.832 -1.484 0.709 1.843 sum 26.091 7.720 6.601 27.998 Atomic orbital electron populations 1.21987 0.95271 1.01962 1.01270 1.20777 0.95769 0.95331 0.97311 1.21831 1.00632 0.95993 1.01671 1.22485 0.99972 0.92302 0.98191 0.87143 1.23325 0.98978 1.01197 0.96780 1.22258 1.04110 0.94204 1.00647 0.85485 1.19636 0.79075 0.79106 0.89253 1.90688 1.65443 1.62453 1.22213 1.46036 1.42683 1.37802 1.11141 1.21385 0.93933 0.94697 0.89158 1.22646 0.95105 0.97233 0.99444 0.88845 1.23189 0.93213 0.98933 1.00511 1.22980 0.88570 0.97143 0.96440 0.91131 1.60227 1.00269 1.62775 1.05597 1.21732 0.91070 0.97619 0.97844 1.19846 0.84639 0.84928 0.87995 1.90524 1.86606 1.46651 1.22939 1.41878 1.05261 1.52347 1.20644 1.19763 0.83324 1.36004 1.03736 0.87867 1.25266 0.99554 0.96845 0.96334 1.69622 1.27306 1.40039 1.17397 0.85797 0.80979 0.77988 0.79566 1.19214 1.20784 1.20745 1.23195 0.95543 1.00138 0.98146 0.92877 0.92703 0.92533 0.88528 0.92646 0.92886 0.92854 0.87472 0.88065 0.76522 0.91543 0.90984 0.91855 0.88905 0.82912 0.93935 0.89702 0.77486 0.91950 0.88832 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.49 37.15 0.28 -1.09 16 2 C -0.07 -0.64 2.43 -90.63 -0.22 -0.86 16 3 C -0.14 -1.02 9.15 37.16 0.34 -0.68 16 4 C -0.11 -0.79 5.73 -90.59 -0.52 -1.30 16 5 H 0.11 0.64 8.07 -51.92 -0.42 0.22 16 6 C -0.17 -0.99 9.26 -26.69 -0.25 -1.24 16 7 C -0.19 -1.33 6.16 -91.77 -0.57 -1.90 16 8 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 9 C 0.54 5.20 5.55 -10.99 -0.06 5.14 16 10 O -0.53 -7.00 13.44 5.55 0.07 -6.92 16 11 N -0.73 -5.65 5.56 -60.29 -0.33 -5.99 16 12 C 0.13 1.17 5.51 -4.04 -0.02 1.15 16 13 C -0.13 -1.00 3.76 -89.80 -0.34 -1.34 16 14 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 15 C -0.12 -1.22 7.43 -25.92 -0.19 -1.42 16 16 C 0.06 0.68 4.14 -66.90 -0.28 0.40 16 17 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 18 N -0.66 -10.38 6.18 -107.13 -0.66 -11.04 16 19 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 20 C 0.44 10.44 7.82 -10.98 -0.09 10.36 16 21 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 22 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 24 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 25 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 26 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 27 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 31 C -0.13 -1.24 7.21 -25.92 -0.19 -1.43 16 32 H 0.05 0.43 6.96 -51.93 -0.36 0.07 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 5.21 -51.93 -0.27 0.34 16 35 H 0.10 1.07 6.40 -51.93 -0.33 0.74 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.73 5.81 -51.92 -0.30 0.42 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.77 7.84 -51.94 -0.41 0.37 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 46 H 0.35 5.75 8.24 -39.29 -0.32 5.43 16 47 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 48 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 52 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 414.93 15.07 6.25 6.25 Total: -1.00 -32.78 414.93 -10.21 -43.00 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -8.91 Total: 14.16 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.37 Total: -1.41 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.33 Total: -55.31 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.78 -10.21 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479329297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.714 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds