Wall clock time and date at job start Tue Mar 31 2020 20:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 C 1.52994 * 109.47160 * 120.00231 * 2 1 3 5 5 H 1.09011 * 115.56160 * 211.51994 * 4 2 1 6 6 C 1.53070 * 117.51595 * 357.22501 * 4 2 1 7 7 C 1.53001 * 117.50138 * 65.83655 * 4 2 1 8 8 H 1.08990 * 117.50129 * 144.99609 * 7 4 2 9 9 C 1.50701 * 117.49632 * 359.97438 * 7 4 2 10 10 O 1.21286 * 119.99695 * 35.59190 * 9 7 4 11 11 N 1.34774 * 120.00165 * 215.58630 * 9 7 4 12 12 C 1.46503 * 119.99835 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46732 * 179.97438 * 12 11 9 14 14 H 1.08993 * 112.90581 * 316.25225 * 13 12 11 15 15 C 1.53777 * 113.61085 * 87.50524 * 13 12 11 16 16 C 1.53782 * 87.08303 * 139.97811 * 15 13 12 17 17 H 1.08998 * 113.68871 * 89.12031 * 16 15 13 18 18 N 1.46894 * 113.61618 * 220.01793 * 16 15 13 19 19 C 1.46898 * 110.99669 * 252.49573 * 18 16 15 20 20 C 1.50704 * 109.46793 * 180.02562 * 19 18 16 21 21 O 1.21289 * 120.00225 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00353 * 179.97438 * 22 20 19 24 24 H 1.07996 * 120.00187 * 0.02562 * 23 22 20 25 25 C 1.38957 * 120.00235 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99543 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00039 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47136 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47201 * 120.00145 * 27 25 23 30 30 H 1.48500 * 109.47219 * 240.00024 * 27 25 23 31 31 C 1.53782 * 113.61031 * 185.00053 * 13 12 11 32 32 H 1.09006 * 109.47402 * 295.53391 * 1 2 3 33 33 H 1.09003 * 109.47674 * 55.53145 * 1 2 3 34 34 H 1.08999 * 109.47719 * 175.53450 * 1 2 3 35 35 H 1.09000 * 109.47008 * 240.00336 * 2 1 3 36 36 H 1.08997 * 109.47144 * 295.13370 * 3 2 1 37 37 H 1.08996 * 109.47310 * 55.13268 * 3 2 1 38 38 H 1.09005 * 109.47055 * 175.13804 * 3 2 1 39 39 H 1.09008 * 117.51123 * 0.02562 * 6 4 2 40 40 H 1.08997 * 117.51396 * 214.95983 * 6 4 2 41 41 H 0.97005 * 120.00162 * 0.02562 * 11 9 7 42 42 H 1.09000 * 109.47200 * 60.00240 * 12 11 9 43 43 H 1.08989 * 109.47221 * 299.99478 * 12 11 9 44 44 H 1.09004 * 113.61337 * 254.52788 * 15 13 12 45 45 H 1.09003 * 113.61845 * 25.42942 * 15 13 12 46 46 H 1.00897 * 111.00260 * 128.54099 * 18 16 15 47 47 H 1.09002 * 109.47577 * 299.99685 * 19 18 16 48 48 H 1.09002 * 109.47466 * 60.00433 * 19 18 16 49 49 H 0.97011 * 119.99734 * 359.97438 * 22 20 19 50 50 H 0.96999 * 119.99663 * 179.97438 * 26 25 23 51 51 H 1.08998 * 113.61281 * 334.56608 * 31 13 12 52 52 H 1.08999 * 113.61194 * 105.39302 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.9871 -0.3581 1.6483 6 6 0.9972 -1.2238 2.2508 7 6 1.7517 -2.2192 1.3672 8 1 2.5091 -2.8415 1.8436 9 6 0.9866 -2.8712 0.2444 10 8 1.1602 -2.5068 -0.8993 11 7 0.1096 -3.8592 0.5111 12 6 -0.6337 -4.4933 -0.5805 13 6 -1.5534 -5.5751 -0.0103 14 1 -1.0655 -6.1923 0.7440 15 6 -2.9310 -5.0467 0.4230 16 6 -3.5245 -6.3351 -0.1709 17 1 -3.5762 -7.1609 0.5385 18 7 -4.7861 -6.1234 -0.8930 19 6 -5.9244 -6.6534 -0.1304 20 6 -7.1980 -6.4191 -0.9012 21 8 -7.1612 -5.8648 -1.9794 22 7 -8.3782 -6.8246 -0.3920 23 6 -9.5369 -6.6111 -1.0929 24 1 -9.5040 -6.1183 -2.0533 25 6 -10.7536 -7.0297 -0.5681 26 7 -10.7935 -7.6297 0.6003 27 14 -12.3322 -6.7393 -1.5235 28 1 -12.0182 -6.0503 -2.8009 29 1 -12.9833 -8.0425 -1.8116 30 1 -13.2503 -5.8948 -0.7177 31 6 -2.2911 -6.3871 -1.0879 32 1 -0.3634 0.4430 0.9273 33 1 -0.3634 0.5816 -0.8472 34 1 -0.3634 -1.0245 -0.0800 35 1 1.8932 -0.5138 -0.8900 36 1 1.7495 1.9305 -0.9303 37 1 1.6072 1.9809 0.8431 38 1 3.1265 1.4437 0.0871 39 1 -0.0522 -1.0408 2.0197 40 1 1.2584 -1.1911 3.3085 41 1 -0.0295 -4.1504 1.4259 42 1 0.0669 -4.9455 -1.2825 43 1 -1.2319 -3.7426 -1.0968 44 1 -3.0488 -4.9694 1.5039 45 1 -3.2369 -4.1422 -0.1029 46 1 -4.7476 -6.5308 -1.8152 47 1 -5.7884 -7.7230 0.0294 48 1 -5.9839 -6.1467 0.8329 49 1 -8.4077 -7.2676 0.4706 50 1 -11.6428 -7.9216 0.9669 51 1 -2.4220 -5.8491 -2.0267 52 1 -1.8914 -7.3915 -1.2277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479329297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:42 Heat of formation + Delta-G solvation = -62.473123 kcal Electronic energy + Delta-G solvation = -28465.225342 eV Core-core repulsion = 24464.584187 eV Total energy + Delta-G solvation = -4000.641156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40350 -40.48511 -39.80994 -38.28990 -36.20886 -35.75907 -34.52892 -33.89831 -33.24259 -29.50880 -28.14703 -27.94583 -26.62064 -25.92008 -24.70324 -24.36860 -22.41974 -21.32821 -21.14640 -20.36346 -20.03953 -19.83813 -18.05937 -17.79431 -17.15965 -16.89951 -16.77397 -16.49192 -16.34096 -15.95165 -15.77481 -15.53419 -15.27215 -15.15056 -15.00683 -14.35835 -14.12928 -13.92991 -13.63736 -13.54280 -13.47877 -13.30329 -13.22518 -13.00765 -12.77792 -12.61468 -12.47440 -12.41251 -12.28133 -12.12827 -11.94724 -11.80763 -11.73665 -11.57844 -11.52027 -11.23956 -11.15436 -10.93055 -10.44965 -10.32776 -10.02461 -10.00663 -9.29075 -8.47941 -5.96617 1.35805 1.41210 1.55429 1.65275 2.04280 2.19507 2.28818 2.78858 2.97348 3.19408 3.47432 3.59907 3.63180 3.72419 3.88029 3.91625 3.94448 3.99720 4.11869 4.24213 4.27116 4.31544 4.36935 4.45071 4.47659 4.49848 4.59727 4.75266 4.75718 4.78313 4.84924 4.89385 4.91387 4.96631 4.98141 5.02981 5.07969 5.13288 5.22070 5.29110 5.32504 5.36878 5.40083 5.45085 5.54071 5.62423 5.93951 6.20196 6.43486 6.59451 6.62495 7.11802 7.33500 7.55291 8.10954 8.69652 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.001634 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.689255 B =17134.290607 C =17823.514185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.140 4.140 4 C -0.121 4.121 5 H 0.129 0.871 6 C -0.149 4.149 7 C -0.193 4.193 8 H 0.151 0.849 9 C 0.536 3.464 10 O -0.575 6.575 11 N -0.713 5.713 12 C 0.136 3.864 13 C -0.101 4.101 14 H 0.123 0.877 15 C -0.120 4.120 16 C 0.053 3.947 17 H 0.090 0.910 18 N -0.674 5.674 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.993 3.007 28 H -0.275 1.275 29 H -0.270 1.270 30 H -0.270 1.270 31 C -0.129 4.129 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.415 0.585 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.343 0.657 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.077 0.923 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.168 7.378 9.689 30.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.140 4.140 5 H 0.147 0.853 6 C -0.186 4.186 7 C -0.214 4.214 8 H 0.169 0.831 9 C 0.324 3.676 10 O -0.455 6.455 11 N -0.365 5.365 12 C 0.013 3.987 13 C -0.120 4.120 14 H 0.141 0.859 15 C -0.159 4.159 16 C -0.057 4.057 17 H 0.107 0.893 18 N -0.307 5.307 19 C -0.066 4.066 20 C 0.223 3.777 21 O -0.512 6.512 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.200 1.200 29 H -0.195 1.195 30 H -0.196 1.196 31 C -0.168 4.168 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.252 0.748 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.163 0.837 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 28.044 8.545 8.492 30.522 hybrid contribution -1.156 -1.270 -0.110 1.721 sum 26.888 7.274 8.382 29.088 Atomic orbital electron populations 1.21954 0.96096 1.00645 1.01429 1.20691 0.95054 0.96283 0.97217 1.21794 1.01295 0.94891 1.01738 1.22553 1.01245 0.92300 0.97883 0.85330 1.23366 0.98050 0.99438 0.97752 1.22307 1.04633 0.94341 1.00072 0.83112 1.20187 0.79026 0.78968 0.89406 1.90678 1.66868 1.63742 1.24195 1.45935 1.41825 1.37185 1.11599 1.21217 0.93712 0.94326 0.89493 1.22531 0.93791 0.96492 0.99157 0.85907 1.23134 0.94377 0.97353 1.01014 1.23198 0.87006 0.98368 0.97088 0.89253 1.60247 1.01577 1.63197 1.05645 1.21586 0.88318 0.99436 0.97270 1.20977 0.86024 0.82991 0.87678 1.90491 1.87507 1.48148 1.25066 1.41942 1.05393 1.52916 1.20774 1.19703 0.85189 1.37846 1.03734 0.90478 1.26035 1.02004 0.95993 0.97180 1.69674 1.28474 1.39815 1.18053 0.84870 0.77152 0.78334 0.77968 1.19963 1.19467 1.19555 1.23164 0.94808 1.01197 0.97606 0.91528 0.93838 0.94343 0.91559 0.93302 0.91941 0.91826 0.88535 0.85475 0.74817 0.92115 0.93572 0.90370 0.91514 0.83713 0.91424 0.88039 0.76926 0.91267 0.90408 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.49 71.98 0.54 -2.23 16 2 C -0.07 -1.29 2.43 -10.80 -0.03 -1.32 16 3 C -0.14 -1.90 9.15 71.98 0.66 -1.25 16 4 C -0.12 -1.52 5.73 -10.77 -0.06 -1.59 16 5 H 0.13 1.15 8.07 -2.38 -0.02 1.13 16 6 C -0.15 -1.41 9.26 30.62 0.28 -1.13 16 7 C -0.19 -2.33 6.16 -11.54 -0.07 -2.40 16 8 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 9 C 0.54 10.09 5.55 87.66 0.49 10.58 16 10 O -0.58 -15.86 13.44 -3.05 -0.04 -15.90 16 11 N -0.71 -10.35 5.56 -463.05 -2.57 -12.92 16 12 C 0.14 2.39 5.51 86.38 0.48 2.86 16 13 C -0.10 -1.41 3.76 -10.27 -0.04 -1.45 16 14 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 15 C -0.12 -2.28 7.43 31.12 0.23 -2.05 16 16 C 0.05 1.12 4.14 45.45 0.19 1.31 16 17 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 18 N -0.67 -21.03 6.18 -492.85 -3.05 -24.07 16 19 C 0.07 2.25 6.01 85.56 0.51 2.77 16 20 C 0.44 20.97 7.82 87.66 0.69 21.66 16 21 O -0.63 -35.39 15.78 -3.06 -0.05 -35.44 16 22 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 23 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 24 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.57 13.05 21.67 0.28 -49.29 16 27 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 31 C -0.13 -2.26 7.21 31.12 0.22 -2.03 16 32 H 0.07 1.06 6.96 -2.38 -0.02 1.04 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.87 5.21 -2.39 -0.01 0.85 16 35 H 0.07 1.58 6.40 -2.39 -0.02 1.56 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.10 1.15 5.81 -2.38 -0.01 1.14 16 40 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.42 3.56 8.47 -92.70 -0.79 2.77 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.06 7.84 -2.39 -0.02 1.04 16 44 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 46 H 0.34 11.40 8.24 -89.70 -0.74 10.66 16 47 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 48 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.40 19.35 7.90 -92.70 -0.73 18.62 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 52 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -74.10 414.93 -0.97 -75.07 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -1.31 Total: 43.51 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.37 Total: 5.08 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -6.96 Total: -117.55 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.09 Total: -51.34 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.10 -0.97 -75.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479329297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.592 kcal (2) G-P(sol) polarization free energy of solvation -74.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds