Wall clock time and date at job start Tue Mar 31 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47454 * 2 1 4 4 H 1.08996 * 110.72895 * 302.64097 * 3 2 1 5 5 C 1.54938 * 110.66771 * 179.54209 * 3 2 1 6 6 H 1.09001 * 110.72739 * 322.50637 * 5 3 2 7 7 N 1.46499 * 110.87837 * 85.72653 * 5 3 2 8 8 C 1.34777 * 120.00181 * 200.04408 * 7 5 3 9 9 O 1.21277 * 119.99750 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00084 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.46908 * 299.99859 * 10 8 7 12 12 C 1.52997 * 109.46728 * 60.00018 * 10 8 7 13 13 C 1.52997 * 109.46876 * 180.02562 * 10 8 7 14 14 C 1.53002 * 117.49753 * 128.62279 * 13 10 8 15 15 C 1.52994 * 59.99918 * 252.50757 * 14 13 10 16 16 C 1.54605 * 102.92239 * 204.15103 * 5 3 2 17 17 C 1.53995 * 105.13764 * 21.95957 * 16 5 3 18 18 N 1.47902 * 107.06035 * 1.22241 * 17 16 5 19 19 C 1.46897 * 111.00433 * 214.15677 * 18 17 16 20 20 C 1.50700 * 109.46941 * 302.99898 * 19 18 17 21 21 O 1.21291 * 120.00347 * 354.33523 * 20 19 18 22 22 N 1.34776 * 119.99685 * 174.34444 * 20 19 18 23 23 C 1.37101 * 119.99915 * 179.72324 * 22 20 19 24 24 H 1.08001 * 119.99899 * 0.27080 * 23 22 20 25 25 C 1.38948 * 120.00371 * 180.27202 * 23 22 20 26 26 N 1.31405 * 120.00162 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99762 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47162 * 90.00119 * 27 25 23 29 29 H 1.48503 * 109.47537 * 209.99934 * 27 25 23 30 30 H 1.48496 * 109.47271 * 330.00207 * 27 25 23 31 31 H 1.08994 * 109.47326 * 160.51440 * 1 2 3 32 32 H 1.09000 * 109.47463 * 280.52057 * 1 2 3 33 33 H 1.09010 * 109.46823 * 40.51419 * 1 2 3 34 34 H 1.09005 * 109.47354 * 239.99964 * 2 1 3 35 35 H 1.09001 * 109.47261 * 120.00650 * 2 1 3 36 36 H 0.97001 * 119.99993 * 20.03767 * 7 5 3 37 37 H 1.09000 * 109.47459 * 299.99878 * 12 10 8 38 38 H 1.08999 * 109.47084 * 60.00472 * 12 10 8 39 39 H 1.09006 * 109.47016 * 179.97438 * 12 10 8 40 40 H 1.09005 * 115.55161 * 274.32898 * 13 10 8 41 41 H 1.08995 * 117.49989 * 0.02562 * 14 13 10 42 42 H 1.09006 * 117.49488 * 145.01699 * 14 13 10 43 43 H 1.09007 * 117.50167 * 252.50800 * 15 14 13 44 44 H 1.09002 * 117.49818 * 107.48862 * 15 14 13 45 45 H 1.08999 * 110.30775 * 263.04117 * 16 5 3 46 46 H 1.08997 * 110.38979 * 140.91413 * 16 5 3 47 47 H 1.09000 * 109.91641 * 241.87327 * 17 16 5 48 48 H 1.08997 * 109.91765 * 120.57522 * 17 16 5 49 49 H 1.08995 * 109.47508 * 182.99082 * 19 18 17 50 50 H 1.09009 * 109.46979 * 62.99227 * 19 18 17 51 51 H 0.97005 * 120.00160 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6503 1.9894 -0.8584 5 6 3.5890 1.4747 0.0116 6 1 3.9869 0.6757 0.6373 7 7 4.1234 1.3799 -1.3492 8 6 5.3980 0.9891 -1.5470 9 8 6.1027 0.7163 -0.5984 10 6 5.9475 0.8911 -2.9468 11 1 5.3601 0.1725 -3.5182 12 6 5.8725 2.2624 -3.6212 13 6 7.4048 0.4284 -2.8913 14 6 7.8015 -0.7629 -3.7655 15 6 7.6907 -0.9303 -2.2488 16 6 3.9014 2.8582 0.6268 17 6 2.6334 3.2457 1.4100 18 7 1.6764 2.1271 1.2670 19 6 0.2933 2.6201 1.2208 20 6 0.0053 3.4250 2.4618 21 8 0.8303 3.4884 3.3487 22 7 -1.1692 4.0744 2.5862 23 6 -1.4336 4.8021 3.7177 24 1 -0.6990 4.8586 4.5074 25 6 -2.6466 5.4669 3.8485 26 7 -2.9002 6.1640 4.9332 27 14 -3.9169 5.3698 2.4824 28 1 -4.8114 4.2085 2.7198 29 1 -4.7210 6.6182 2.4644 30 1 -3.2285 5.2056 1.1770 31 1 -0.3633 -0.9687 -0.3428 32 1 -0.3634 0.1876 1.0104 33 1 -0.3633 0.7814 -0.6677 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5599 1.5984 -2.1079 37 1 4.8341 2.5916 -3.6607 38 1 6.4600 2.9809 -3.0497 39 1 6.2704 2.1916 -4.6336 40 1 8.1435 1.2174 -2.7499 41 1 7.0244 -1.2168 -4.3804 42 1 8.8014 -0.7578 -4.1996 43 1 8.6176 -1.0354 -1.6849 44 1 6.8405 -1.4946 -1.8655 45 1 4.0975 3.5866 -0.1600 46 1 4.7559 2.7903 1.3001 47 1 2.2040 4.1571 0.9940 48 1 2.8773 3.3934 2.4620 49 1 -0.3923 1.7744 1.1689 50 1 0.1612 3.2495 0.3407 51 1 -1.8289 4.0239 1.8768 52 1 -3.7469 6.6284 5.0244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479632928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:44 Heat of formation + Delta-G solvation = -39.644191 kcal Electronic energy + Delta-G solvation = -30099.995031 eV Core-core repulsion = 26100.343812 eV Total energy + Delta-G solvation = -3999.651219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58323 -39.47102 -37.96911 -37.13354 -34.63453 -33.98807 -33.32296 -32.76225 -31.69585 -30.68003 -27.84427 -26.66857 -25.09992 -24.17200 -22.76367 -22.59409 -22.11925 -20.75276 -20.65067 -19.66235 -19.31791 -18.25114 -17.32555 -16.82168 -15.95456 -15.83159 -15.63255 -15.20017 -14.90186 -14.82204 -14.69441 -14.31297 -14.02357 -13.58374 -13.36806 -13.15096 -13.10227 -12.95116 -12.91928 -12.71536 -12.54608 -12.33237 -12.16472 -12.08169 -11.81984 -11.57988 -11.39305 -11.36220 -11.26262 -11.19217 -10.92242 -10.70355 -10.62707 -10.58018 -10.41823 -10.36982 -9.98206 -9.77000 -9.56296 -9.17912 -8.53306 -8.19941 -8.07942 -6.31780 -3.83134 2.48437 2.82999 3.00329 3.05120 3.13431 3.59950 3.73292 4.02626 4.09185 4.17243 4.33664 4.46340 4.52469 4.54793 4.74912 4.86679 4.88513 4.89706 5.00336 5.11123 5.14981 5.15873 5.21578 5.30629 5.31694 5.33245 5.36775 5.48264 5.53256 5.58603 5.65313 5.67371 5.70294 5.70627 5.83941 5.85594 5.86931 5.94145 5.98062 6.01444 6.15217 6.17496 6.28915 6.36849 6.55413 7.09969 7.12928 7.32109 7.57534 8.07887 8.13771 8.59280 8.94637 9.41587 9.82418 10.81362 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002221 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.592796 B =12602.701856 C =12820.497074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.058 3.942 4 H 0.054 0.946 5 C 0.148 3.852 6 H 0.103 0.897 7 N -0.724 5.724 8 C 0.516 3.484 9 O -0.526 6.526 10 C -0.080 4.080 11 H 0.095 0.905 12 C -0.141 4.141 13 C -0.136 4.136 14 C -0.184 4.184 15 C -0.155 4.155 16 C -0.142 4.142 17 C 0.047 3.953 18 N -0.482 5.482 19 C 0.022 3.978 20 C 0.451 3.549 21 O -0.559 6.559 22 N -0.591 5.591 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.879 3.121 28 H -0.270 1.270 29 H -0.277 1.277 30 H -0.271 1.271 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.046 0.954 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.588 -12.239 -22.816 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.052 4.052 4 H 0.072 0.928 5 C 0.043 3.957 6 H 0.121 0.879 7 N -0.375 5.375 8 C 0.302 3.698 9 O -0.401 6.401 10 C -0.102 4.102 11 H 0.114 0.886 12 C -0.199 4.199 13 C -0.154 4.154 14 C -0.221 4.221 15 C -0.192 4.192 16 C -0.181 4.181 17 C -0.081 4.081 18 N -0.206 5.206 19 C -0.109 4.109 20 C 0.236 3.764 21 O -0.440 6.440 22 N -0.231 5.231 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.064 0.936 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.539 -12.596 -20.917 28.418 hybrid contribution -1.676 0.906 -2.066 2.810 sum 12.864 -11.691 -22.984 28.816 Atomic orbital electron populations 1.22009 0.95825 1.01231 1.02458 1.21424 0.96058 0.94649 1.02259 1.23072 0.93421 0.96247 0.92416 0.92802 1.21856 0.92398 0.98694 0.82756 0.87918 1.46036 1.13126 1.69556 1.08813 1.20598 0.81477 0.76336 0.91371 1.90721 1.57786 1.48105 1.43515 1.20904 0.95837 0.99736 0.93709 0.88647 1.21747 1.02417 0.94694 1.01024 1.21931 0.95310 0.92536 1.05645 1.23093 1.02660 1.02132 0.94256 1.22780 1.03320 0.98969 0.94138 1.22877 0.99224 0.96190 0.99822 1.22862 0.90571 0.91951 1.02707 1.64486 1.01431 1.24405 1.30309 1.22514 0.91905 0.99620 0.96899 1.19646 0.83590 0.84058 0.89082 1.90555 1.46492 1.64724 1.42275 1.42207 1.15671 1.46179 1.19053 1.19424 1.03020 1.24753 0.96037 0.86264 1.25035 0.97376 0.96807 0.96984 1.69618 1.24598 1.31638 1.26271 0.86681 0.82211 0.78838 0.81697 1.19578 1.20204 1.19613 0.92881 0.91285 0.92927 0.91964 0.90643 0.76889 0.92057 0.91874 0.91243 0.87537 0.88947 0.88796 0.88806 0.88961 0.91609 0.90484 0.94052 0.88002 0.87633 0.93619 0.79795 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.35 37.16 0.31 -1.28 16 2 C -0.11 -1.09 5.69 -26.74 -0.15 -1.24 16 3 C 0.06 0.66 2.08 -65.79 -0.14 0.53 16 4 H 0.05 0.56 7.78 -51.93 -0.40 0.15 16 5 C 0.15 1.72 2.78 -66.06 -0.18 1.54 16 6 H 0.10 1.41 7.61 -51.93 -0.39 1.01 16 7 N -0.72 -6.47 5.04 -52.00 -0.26 -6.73 16 8 C 0.52 5.28 7.02 -10.98 -0.08 5.20 16 9 O -0.53 -7.51 14.81 5.56 0.08 -7.43 16 10 C -0.08 -0.57 2.88 -91.77 -0.26 -0.84 16 11 H 0.10 0.54 7.90 -51.93 -0.41 0.13 16 12 C -0.14 -0.79 9.07 37.16 0.34 -0.45 16 13 C -0.14 -1.08 4.73 -90.62 -0.43 -1.50 16 14 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 15 C -0.16 -1.34 8.97 -26.74 -0.24 -1.58 16 16 C -0.14 -1.86 6.67 -25.37 -0.17 -2.03 16 17 C 0.05 0.76 5.31 -2.75 -0.01 0.74 16 18 N -0.48 -7.49 4.84 -224.06 -1.08 -8.57 16 19 C 0.02 0.36 4.71 -4.98 -0.02 0.34 16 20 C 0.45 10.10 7.35 -10.99 -0.08 10.02 16 21 O -0.56 -14.73 13.94 5.55 0.08 -14.65 16 22 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 23 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 24 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 27 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 33 H 0.05 0.49 7.62 -51.92 -0.40 0.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 2.52 7.96 -40.82 -0.32 2.19 16 37 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.09 0.51 8.05 -51.93 -0.42 0.10 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 45 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 48 H 0.10 1.97 6.95 -51.93 -0.36 1.61 16 49 H 0.11 1.54 4.40 -51.93 -0.23 1.32 16 50 H 0.05 0.67 7.99 -51.92 -0.41 0.25 16 51 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 52 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 406.22 15.07 6.12 6.12 Total: -1.00 -33.51 406.22 -9.61 -43.11 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.90 Total: 12.25 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.64 Total: 0.31 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.63 Total: -54.22 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.16 Total: -22.07 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.51 -9.61 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479632928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.468 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds