Wall clock time and date at job start Tue Mar 31 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47454 * 2 1 4 4 H 1.08996 * 110.72895 * 302.64097 * 3 2 1 5 5 C 1.54938 * 110.66771 * 179.54209 * 3 2 1 6 6 H 1.09001 * 110.72739 * 322.50637 * 5 3 2 7 7 N 1.46499 * 110.87837 * 85.72653 * 5 3 2 8 8 C 1.34777 * 120.00181 * 200.04408 * 7 5 3 9 9 O 1.21277 * 119.99750 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00084 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.46908 * 299.99859 * 10 8 7 12 12 C 1.52997 * 109.46728 * 60.00018 * 10 8 7 13 13 C 1.52997 * 109.46876 * 180.02562 * 10 8 7 14 14 C 1.53002 * 117.49753 * 128.62279 * 13 10 8 15 15 C 1.52994 * 59.99918 * 252.50757 * 14 13 10 16 16 C 1.54605 * 102.92239 * 204.15103 * 5 3 2 17 17 C 1.53995 * 105.13764 * 21.95957 * 16 5 3 18 18 N 1.47902 * 107.06035 * 1.22241 * 17 16 5 19 19 C 1.46897 * 111.00433 * 214.15677 * 18 17 16 20 20 C 1.50700 * 109.46941 * 302.99898 * 19 18 17 21 21 O 1.21291 * 120.00347 * 354.33523 * 20 19 18 22 22 N 1.34776 * 119.99685 * 174.34444 * 20 19 18 23 23 C 1.37101 * 119.99915 * 179.72324 * 22 20 19 24 24 H 1.08001 * 119.99899 * 0.27080 * 23 22 20 25 25 C 1.38948 * 120.00371 * 180.27202 * 23 22 20 26 26 N 1.31405 * 120.00162 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99762 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47162 * 90.00119 * 27 25 23 29 29 H 1.48503 * 109.47537 * 209.99934 * 27 25 23 30 30 H 1.48496 * 109.47271 * 330.00207 * 27 25 23 31 31 H 1.08994 * 109.47326 * 160.51440 * 1 2 3 32 32 H 1.09000 * 109.47463 * 280.52057 * 1 2 3 33 33 H 1.09010 * 109.46823 * 40.51419 * 1 2 3 34 34 H 1.09005 * 109.47354 * 239.99964 * 2 1 3 35 35 H 1.09001 * 109.47261 * 120.00650 * 2 1 3 36 36 H 0.97001 * 119.99993 * 20.03767 * 7 5 3 37 37 H 1.09000 * 109.47459 * 299.99878 * 12 10 8 38 38 H 1.08999 * 109.47084 * 60.00472 * 12 10 8 39 39 H 1.09006 * 109.47016 * 179.97438 * 12 10 8 40 40 H 1.09005 * 115.55161 * 274.32898 * 13 10 8 41 41 H 1.08995 * 117.49989 * 0.02562 * 14 13 10 42 42 H 1.09006 * 117.49488 * 145.01699 * 14 13 10 43 43 H 1.09007 * 117.50167 * 252.50800 * 15 14 13 44 44 H 1.09002 * 117.49818 * 107.48862 * 15 14 13 45 45 H 1.08999 * 110.30775 * 263.04117 * 16 5 3 46 46 H 1.08997 * 110.38979 * 140.91413 * 16 5 3 47 47 H 1.09000 * 109.91641 * 241.87327 * 17 16 5 48 48 H 1.08997 * 109.91765 * 120.57522 * 17 16 5 49 49 H 1.08995 * 109.47508 * 182.99082 * 19 18 17 50 50 H 1.09009 * 109.46979 * 62.99227 * 19 18 17 51 51 H 0.97005 * 120.00160 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6503 1.9894 -0.8584 5 6 3.5890 1.4747 0.0116 6 1 3.9869 0.6757 0.6373 7 7 4.1234 1.3799 -1.3492 8 6 5.3980 0.9891 -1.5470 9 8 6.1027 0.7163 -0.5984 10 6 5.9475 0.8911 -2.9468 11 1 5.3601 0.1725 -3.5182 12 6 5.8725 2.2624 -3.6212 13 6 7.4048 0.4284 -2.8913 14 6 7.8015 -0.7629 -3.7655 15 6 7.6907 -0.9303 -2.2488 16 6 3.9014 2.8582 0.6268 17 6 2.6334 3.2457 1.4100 18 7 1.6764 2.1271 1.2670 19 6 0.2933 2.6201 1.2208 20 6 0.0053 3.4250 2.4618 21 8 0.8303 3.4884 3.3487 22 7 -1.1692 4.0744 2.5862 23 6 -1.4336 4.8021 3.7177 24 1 -0.6990 4.8586 4.5074 25 6 -2.6466 5.4669 3.8485 26 7 -2.9002 6.1640 4.9332 27 14 -3.9169 5.3698 2.4824 28 1 -4.8114 4.2085 2.7198 29 1 -4.7210 6.6182 2.4644 30 1 -3.2285 5.2056 1.1770 31 1 -0.3633 -0.9687 -0.3428 32 1 -0.3634 0.1876 1.0104 33 1 -0.3633 0.7814 -0.6677 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5599 1.5984 -2.1079 37 1 4.8341 2.5916 -3.6607 38 1 6.4600 2.9809 -3.0497 39 1 6.2704 2.1916 -4.6336 40 1 8.1435 1.2174 -2.7499 41 1 7.0244 -1.2168 -4.3804 42 1 8.8014 -0.7578 -4.1996 43 1 8.6176 -1.0354 -1.6849 44 1 6.8405 -1.4946 -1.8655 45 1 4.0975 3.5866 -0.1600 46 1 4.7559 2.7903 1.3001 47 1 2.2040 4.1571 0.9940 48 1 2.8773 3.3934 2.4620 49 1 -0.3923 1.7744 1.1689 50 1 0.1612 3.2495 0.3407 51 1 -1.8289 4.0239 1.8768 52 1 -3.7469 6.6284 5.0244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479632928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:44 Heat of formation + Delta-G solvation = -64.884543 kcal Electronic energy + Delta-G solvation = -30101.089535 eV Core-core repulsion = 26100.343812 eV Total energy + Delta-G solvation = -4000.745723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53058 -40.67680 -39.46125 -37.89458 -36.08215 -35.47676 -34.28388 -33.76411 -33.46398 -31.77012 -28.88774 -28.11247 -26.09809 -25.42506 -23.82497 -23.21988 -22.94067 -21.73118 -21.59630 -21.20047 -20.48585 -20.09465 -18.13989 -17.83549 -17.52860 -16.86790 -16.72682 -16.47524 -16.11520 -15.73424 -15.62703 -15.51614 -15.24847 -15.03173 -14.58242 -14.44562 -14.27144 -14.00431 -13.95521 -13.76564 -13.59685 -13.43220 -13.23512 -13.00737 -12.73158 -12.61606 -12.49559 -12.41357 -12.35226 -12.24605 -11.98922 -11.95811 -11.81416 -11.62006 -11.53666 -11.42174 -11.32732 -10.94985 -10.55857 -10.33561 -10.24627 -10.03543 -9.35770 -8.41118 -6.02160 1.29284 1.35757 1.44382 1.70171 1.95229 2.02394 2.23137 2.70231 3.02015 3.13651 3.16886 3.39832 3.61975 3.73886 3.85215 3.96103 3.99464 4.06945 4.14598 4.20550 4.25248 4.29055 4.34460 4.37503 4.40187 4.43250 4.52302 4.60000 4.64139 4.71700 4.84115 4.88505 4.91535 4.97856 5.05402 5.05873 5.10034 5.15921 5.20374 5.23731 5.28935 5.34493 5.38880 5.47522 5.49380 5.53274 5.85273 5.93677 6.06135 6.59318 6.61341 6.88501 7.33524 7.39306 7.97016 8.76588 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002221 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.592796 B =12602.701856 C =12820.497074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C 0.067 3.933 4 H 0.085 0.915 5 C 0.158 3.842 6 H 0.078 0.922 7 N -0.707 5.707 8 C 0.513 3.487 9 O -0.574 6.574 10 C -0.072 4.072 11 H 0.121 0.879 12 C -0.138 4.138 13 C -0.146 4.146 14 C -0.159 4.159 15 C -0.178 4.178 16 C -0.132 4.132 17 C 0.052 3.948 18 N -0.505 5.505 19 C 0.036 3.964 20 C 0.448 3.552 21 O -0.608 6.608 22 N -0.591 5.591 23 C -0.327 4.327 24 H 0.053 0.947 25 C -0.017 4.017 26 N -0.935 5.935 27 Si 0.966 3.034 28 H -0.256 1.256 29 H -0.276 1.276 30 H -0.230 1.230 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.036 0.964 48 H 0.054 0.946 49 H 0.133 0.867 50 H 0.081 0.919 51 H 0.389 0.611 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 -13.487 -28.679 33.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.042 4.042 4 H 0.103 0.897 5 C 0.052 3.948 6 H 0.096 0.904 7 N -0.360 5.360 8 C 0.301 3.699 9 O -0.452 6.452 10 C -0.093 4.093 11 H 0.139 0.861 12 C -0.196 4.196 13 C -0.165 4.165 14 C -0.195 4.195 15 C -0.216 4.216 16 C -0.172 4.172 17 C -0.076 4.076 18 N -0.231 5.231 19 C -0.095 4.095 20 C 0.236 3.764 21 O -0.491 6.491 22 N -0.233 5.233 23 C -0.456 4.456 24 H 0.071 0.929 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.785 3.215 28 H -0.180 1.180 29 H -0.201 1.201 30 H -0.153 1.153 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.150 0.850 50 H 0.098 0.902 51 H 0.225 0.775 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.819 -13.859 -26.836 32.811 hybrid contribution -0.986 1.266 -0.097 1.608 sum 11.833 -12.593 -26.933 32.000 Atomic orbital electron populations 1.21997 0.95146 1.02849 1.01526 1.21432 0.96585 0.93553 1.02548 1.23144 0.92853 0.96873 0.91292 0.89744 1.21527 0.92806 0.96610 0.83863 0.90431 1.45829 1.13061 1.68935 1.08168 1.21269 0.81266 0.75118 0.92278 1.90716 1.59012 1.50140 1.45316 1.20930 0.95231 1.01434 0.91668 0.86134 1.21764 1.03367 0.93079 1.01381 1.22025 0.95930 0.92291 1.06251 1.23164 1.03724 1.00010 0.92642 1.22736 1.02559 1.00083 0.96174 1.22761 0.96954 0.97801 0.99647 1.22624 0.92280 0.92360 1.00343 1.64394 1.00873 1.24163 1.33636 1.22476 0.92930 0.99973 0.94128 1.20918 0.82236 0.82915 0.90379 1.90553 1.47915 1.65958 1.44717 1.42014 1.16781 1.46209 1.18290 1.18975 1.02647 1.27245 0.96730 0.92881 1.26143 0.99700 0.95293 1.00423 1.69809 1.25775 1.32713 1.29295 0.85358 0.78178 0.79182 0.78763 1.18048 1.20081 1.15280 0.91278 0.93473 0.91253 0.89343 0.92774 0.74678 0.90403 0.93383 0.89556 0.88392 0.87227 0.87775 0.89832 0.90196 0.89791 0.92363 0.94537 0.92720 0.84961 0.90159 0.77514 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.35 71.98 0.60 -1.94 16 2 C -0.10 -1.80 5.69 30.59 0.17 -1.63 16 3 C 0.07 1.33 2.08 45.26 0.09 1.43 16 4 H 0.08 1.26 7.78 -2.39 -0.02 1.24 16 5 C 0.16 3.47 2.78 46.20 0.13 3.60 16 6 H 0.08 2.15 7.61 -2.39 -0.02 2.13 16 7 N -0.71 -10.68 5.04 -436.82 -2.20 -12.88 16 8 C 0.51 9.67 7.02 87.66 0.62 10.29 16 9 O -0.57 -16.56 14.81 -3.02 -0.04 -16.61 16 10 C -0.07 -0.82 2.88 -11.54 -0.03 -0.85 16 11 H 0.12 0.82 7.90 -2.39 -0.02 0.80 16 12 C -0.14 -1.07 9.07 71.98 0.65 -0.42 16 13 C -0.15 -2.11 4.73 -10.80 -0.05 -2.16 16 14 C -0.16 -1.67 10.18 30.59 0.31 -1.36 16 15 C -0.18 -3.02 8.97 30.59 0.27 -2.74 16 16 C -0.13 -3.47 6.67 31.48 0.21 -3.26 16 17 C 0.05 1.73 5.31 86.45 0.46 2.19 16 18 N -0.51 -15.26 4.84 -862.79 -4.17 -19.43 16 19 C 0.04 1.09 4.71 85.56 0.40 1.49 16 20 C 0.45 20.30 7.35 87.66 0.64 20.94 16 21 O -0.61 -34.00 13.94 -3.06 -0.04 -34.05 16 22 N -0.59 -27.79 5.09 -306.98 -1.56 -29.36 16 23 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 24 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 25 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 26 N -0.94 -56.63 13.96 21.66 0.30 -56.33 16 27 Si 0.97 38.36 27.74 68.60 1.90 40.26 16 28 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 29 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 30 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.97 6.28 -2.39 -0.01 0.96 16 33 H 0.07 0.90 7.62 -2.38 -0.02 0.88 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.42 3.31 7.96 -92.71 -0.74 2.58 16 37 H 0.08 0.35 7.56 -2.39 -0.02 0.34 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.10 1.55 8.11 -2.38 -0.02 1.53 16 41 H 0.11 0.80 8.05 -2.39 -0.02 0.78 16 42 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 45 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.04 1.21 7.69 -2.39 -0.02 1.19 16 48 H 0.05 2.31 6.95 -2.39 -0.02 2.29 16 49 H 0.13 3.41 4.40 -2.39 -0.01 3.40 16 50 H 0.08 1.95 7.99 -2.38 -0.02 1.93 16 51 H 0.39 14.99 5.76 -92.70 -0.53 14.46 16 52 H 0.28 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -82.83 406.22 -0.42 -83.25 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.41 Total: 38.42 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.80 Total: 6.73 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -7.64 Total: -118.00 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.09 Total: -50.66 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -82.83 -0.42 -83.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479632928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.367 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds