Wall clock time and date at job start Tue Mar 31 2020 20:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47210 * 2 1 4 4 H 1.08997 * 109.90541 * 306.10247 * 3 2 1 5 5 C 1.53990 * 109.91813 * 184.99927 * 3 2 1 6 6 H 1.09005 * 110.31029 * 358.24117 * 5 3 2 7 7 N 1.46505 * 110.31019 * 120.30779 * 5 3 2 8 8 C 1.34778 * 119.99943 * 205.00000 * 7 5 3 9 9 O 1.21277 * 120.00059 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99637 * 180.02562 * 8 7 5 11 11 H 1.09000 * 109.47374 * 59.99792 * 10 8 7 12 12 C 1.53006 * 109.47239 * 299.99654 * 10 8 7 13 13 C 1.52999 * 109.46961 * 180.02562 * 10 8 7 14 14 C 1.53007 * 117.49512 * 248.74639 * 13 10 8 15 15 C 1.52997 * 117.49978 * 180.08697 * 13 10 8 16 16 C 1.54592 * 105.14131 * 239.22290 * 5 3 2 17 17 C 1.54939 * 102.92104 * 338.04407 * 16 5 3 18 18 N 1.47900 * 110.08140 * 67.31016 * 3 2 1 19 19 C 1.46901 * 111.00085 * 265.29097 * 18 3 2 20 20 C 1.50700 * 109.47396 * 170.00152 * 19 18 3 21 21 O 1.21295 * 119.99714 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99869 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99570 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00154 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99733 * 180.02562 * 23 22 20 26 26 N 1.31413 * 120.00153 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00281 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47091 * 90.00055 * 27 25 23 29 29 H 1.48494 * 109.47291 * 210.00517 * 27 25 23 30 30 H 1.48500 * 109.46801 * 330.00047 * 27 25 23 31 31 H 1.08994 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47341 * 300.00214 * 1 2 3 33 33 H 1.09007 * 109.47178 * 59.99972 * 1 2 3 34 34 H 1.08996 * 109.47461 * 240.00328 * 2 1 3 35 35 H 1.09001 * 109.47410 * 119.99692 * 2 1 3 36 36 H 0.96994 * 119.99585 * 25.00054 * 7 5 3 37 37 H 1.09001 * 109.47002 * 60.00070 * 12 10 8 38 38 H 1.08993 * 109.46955 * 180.02562 * 12 10 8 39 39 H 1.09000 * 109.47050 * 300.00336 * 12 10 8 40 40 H 1.09001 * 115.55315 * 34.40937 * 13 10 8 41 41 H 1.08998 * 117.49927 * 359.97438 * 14 13 10 42 42 H 1.09002 * 117.49941 * 145.02062 * 14 13 10 43 43 H 1.09002 * 117.50329 * 214.97479 * 15 13 10 44 44 H 1.09001 * 117.49741 * 359.97332 * 15 13 10 45 45 H 1.09003 * 110.72627 * 96.39866 * 16 5 3 46 46 H 1.08997 * 110.72951 * 219.68519 * 16 5 3 47 47 H 1.09001 * 110.66992 * 278.97973 * 17 16 5 48 48 H 1.09002 * 110.67038 * 155.84348 * 17 16 5 49 49 H 1.09004 * 109.47083 * 290.00154 * 19 18 3 50 50 H 1.09007 * 109.46952 * 49.99482 * 19 18 3 51 51 H 0.96996 * 120.00259 * 359.97438 * 22 20 19 52 52 H 0.96998 * 120.00137 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5944 1.9938 -0.8280 5 6 3.5747 1.4564 -0.1262 6 1 3.9610 0.4376 -0.1562 7 7 3.9794 2.1885 -1.3289 8 6 5.1640 1.9212 -1.9138 9 8 5.8949 1.0751 -1.4441 10 6 5.5805 2.6747 -3.1506 11 1 5.6317 3.7403 -2.9270 12 6 4.5570 2.4355 -4.2625 13 6 6.9548 2.1826 -3.6088 14 6 8.1324 3.1503 -3.4747 15 6 7.5572 2.8308 -4.8569 16 6 4.0774 2.1860 1.1406 17 6 2.8403 3.0087 1.5806 18 7 1.7041 2.1000 1.2816 19 6 0.4449 2.8491 1.1749 20 6 0.0090 3.2969 2.5462 21 8 0.6810 3.0190 3.5170 22 7 -1.1279 4.0054 2.6939 23 6 -1.5247 4.4123 3.9415 24 1 -0.9264 4.1649 4.8060 25 6 -2.6972 5.1423 4.0939 26 7 -3.0778 5.5320 5.2898 27 14 -3.7324 5.5697 2.5989 28 1 -4.7270 4.4930 2.3613 29 1 -4.4399 6.8534 2.8373 30 1 -2.8531 5.7027 1.4097 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3950 2.8654 -1.7042 37 1 3.5777 2.7857 -3.9363 38 1 4.8586 2.9801 -5.1571 39 1 4.5058 1.3699 -4.4861 40 1 7.1531 1.1232 -3.4464 41 1 7.9279 4.1376 -3.0605 42 1 9.1054 2.7274 -3.2246 43 1 8.1521 2.1980 -5.5155 44 1 6.9742 3.6076 -5.3518 45 1 4.3585 1.4695 1.9125 46 1 4.9127 2.8439 0.9010 47 1 2.7620 3.9269 0.9984 48 1 2.8851 3.2305 2.6468 49 1 0.5938 3.7212 0.5381 50 1 -0.3230 2.2089 0.7404 51 1 -1.6655 4.2273 1.9176 52 1 -3.8961 6.0419 5.3962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479632929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:46 Heat of formation + Delta-G solvation = -68.160758 kcal Electronic energy + Delta-G solvation = -30066.747199 eV Core-core repulsion = 26065.859409 eV Total energy + Delta-G solvation = -4000.887790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56698 -40.57519 -39.49516 -38.08375 -36.03180 -35.43676 -34.16286 -33.75178 -33.35653 -31.76269 -28.81460 -28.17959 -26.14704 -25.67767 -23.77990 -23.15670 -23.02059 -21.55958 -21.49845 -21.19422 -20.38090 -20.19236 -18.40615 -17.68028 -17.52156 -16.81656 -16.67804 -16.55418 -16.26623 -15.88111 -15.50441 -15.41398 -15.14246 -15.02676 -14.61195 -14.35123 -14.24508 -14.16541 -13.87640 -13.81809 -13.46535 -13.39070 -13.14396 -13.00687 -12.90122 -12.58894 -12.45444 -12.39025 -12.33311 -12.27204 -11.98251 -11.92977 -11.82931 -11.73623 -11.53858 -11.43583 -11.26711 -10.92465 -10.69787 -10.36090 -10.22097 -10.08910 -9.31507 -8.39232 -5.99973 1.30307 1.37058 1.45481 1.64875 1.99282 2.06807 2.24603 2.65593 2.93981 3.15913 3.22874 3.43988 3.66726 3.68577 3.70918 4.00808 4.01108 4.08366 4.15214 4.19764 4.27248 4.32662 4.34694 4.37113 4.43124 4.50045 4.50604 4.52698 4.68617 4.71803 4.79886 4.87534 4.90269 4.97355 5.01748 5.03209 5.08346 5.10571 5.16633 5.26924 5.32610 5.34291 5.37866 5.47330 5.50789 5.55376 5.88676 5.96081 6.08292 6.54580 6.62300 6.91325 7.26493 7.42632 8.01087 8.78578 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002329 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.396536 B =12017.643988 C =12258.726837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 C 0.068 3.932 4 H 0.086 0.914 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.710 5.710 8 C 0.519 3.481 9 O -0.580 6.580 10 C -0.073 4.073 11 H 0.114 0.886 12 C -0.138 4.138 13 C -0.151 4.151 14 C -0.188 4.188 15 C -0.159 4.159 16 C -0.123 4.123 17 C 0.044 3.956 18 N -0.507 5.507 19 C 0.040 3.960 20 C 0.453 3.547 21 O -0.606 6.606 22 N -0.593 5.593 23 C -0.325 4.325 24 H 0.053 0.947 25 C -0.018 4.018 26 N -0.937 5.937 27 Si 0.966 3.034 28 H -0.257 1.257 29 H -0.277 1.277 30 H -0.229 1.229 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.124 0.876 51 H 0.389 0.611 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.147 -4.379 -28.792 31.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.141 4.141 3 C -0.041 4.041 4 H 0.103 0.897 5 C 0.042 3.958 6 H 0.107 0.893 7 N -0.362 5.362 8 C 0.307 3.693 9 O -0.459 6.459 10 C -0.094 4.094 11 H 0.132 0.868 12 C -0.195 4.195 13 C -0.170 4.170 14 C -0.225 4.225 15 C -0.196 4.196 16 C -0.162 4.162 17 C -0.084 4.084 18 N -0.232 5.232 19 C -0.091 4.091 20 C 0.240 3.760 21 O -0.490 6.490 22 N -0.236 5.236 23 C -0.454 4.454 24 H 0.071 0.929 25 C -0.217 4.217 26 N -0.578 5.578 27 Si 0.785 3.215 28 H -0.182 1.182 29 H -0.202 1.202 30 H -0.152 1.152 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.142 0.858 51 H 0.224 0.776 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.893 -5.455 -27.257 31.076 hybrid contribution -0.813 1.200 -0.060 1.451 sum 13.080 -4.255 -27.318 30.585 Atomic orbital electron populations 1.21881 0.95343 1.02241 1.01811 1.21480 0.96498 0.94069 1.02099 1.22709 0.93126 0.97212 0.91022 0.89672 1.21610 0.93528 0.96556 0.84143 0.89312 1.46041 1.20417 1.41555 1.28190 1.21113 0.80462 0.82487 0.85281 1.90688 1.53444 1.35526 1.66236 1.20890 0.95331 1.00675 0.92528 0.86814 1.21770 0.97595 1.02681 0.97492 1.21983 0.92826 0.98444 1.03758 1.23108 0.97727 1.00370 1.01304 1.23067 1.03045 1.03272 0.90224 1.22800 0.96843 0.99185 0.97411 1.23153 0.89964 0.94291 1.00958 1.64291 1.00976 1.27972 1.29934 1.22227 0.94781 0.99260 0.92823 1.20884 0.81762 0.81195 0.92116 1.90548 1.55909 1.59440 1.43099 1.42020 1.22930 1.50820 1.07805 1.18966 1.07658 1.33247 0.85528 0.92908 1.26142 0.98114 0.96192 1.01209 1.69814 1.24942 1.38359 1.24658 0.85357 0.78999 0.78851 0.78256 1.18171 1.20191 1.15173 0.92166 0.93709 0.91064 0.90019 0.92743 0.74996 0.90494 0.89713 0.92828 0.89200 0.88174 0.89338 0.88238 0.86945 0.91307 0.90535 0.92772 0.92507 0.89866 0.85792 0.77562 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.85 71.98 0.64 -2.33 16 2 C -0.10 -2.02 5.39 30.60 0.16 -1.86 16 3 C 0.07 1.35 2.37 45.06 0.11 1.45 16 4 H 0.09 1.24 7.26 -2.39 -0.02 1.22 16 5 C 0.15 3.04 2.98 45.87 0.14 3.18 16 6 H 0.09 2.12 7.10 -2.38 -0.02 2.11 16 7 N -0.71 -10.91 4.95 -438.37 -2.17 -13.08 16 8 C 0.52 9.78 7.15 87.66 0.63 10.41 16 9 O -0.58 -16.40 15.30 -3.02 -0.05 -16.45 16 10 C -0.07 -0.88 2.88 -11.54 -0.03 -0.91 16 11 H 0.11 1.00 7.90 -2.39 -0.02 0.98 16 12 C -0.14 -1.01 8.93 71.98 0.64 -0.37 16 13 C -0.15 -2.23 4.75 -10.79 -0.05 -2.28 16 14 C -0.19 -2.47 10.18 30.62 0.31 -2.16 16 15 C -0.16 -1.57 9.74 30.62 0.30 -1.27 16 16 C -0.12 -3.09 6.78 31.80 0.22 -2.87 16 17 C 0.04 1.29 5.93 86.65 0.51 1.80 16 18 N -0.51 -14.56 4.40 -862.59 -3.80 -18.36 16 19 C 0.04 1.17 4.76 85.56 0.41 1.58 16 20 C 0.45 20.13 7.61 87.66 0.67 20.80 16 21 O -0.61 -33.57 14.64 -3.08 -0.05 -33.62 16 22 N -0.59 -27.53 5.09 -306.98 -1.56 -29.09 16 23 C -0.32 -18.94 10.16 84.04 0.85 -18.08 16 24 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 25 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 26 N -0.94 -56.54 13.96 21.66 0.30 -56.24 16 27 Si 0.97 38.11 27.74 68.60 1.90 40.01 16 28 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 29 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 30 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.10 5.90 -2.39 -0.01 1.08 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.41 3.91 7.75 -92.71 -0.72 3.20 16 37 H 0.08 0.33 7.56 -2.39 -0.02 0.31 16 38 H 0.08 0.39 7.29 -2.39 -0.02 0.37 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 1.80 7.47 -2.39 -0.02 1.78 16 41 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 0.72 7.61 -2.39 -0.02 0.70 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.08 1.83 8.05 -2.39 -0.02 1.82 16 47 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 48 H 0.06 2.17 7.10 -2.39 -0.02 2.15 16 49 H 0.08 1.91 7.83 -2.38 -0.02 1.90 16 50 H 0.12 3.02 5.21 -2.38 -0.01 3.01 16 51 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 52 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.66 407.28 0.17 -81.50 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.38 Total: 38.79 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.97 Total: 6.53 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -7.23 Total: -116.77 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.09 Total: -50.06 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Total: -81.66 0.17 -81.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479632929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.338 kcal (2) G-P(sol) polarization free energy of solvation -81.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds