Wall clock time and date at job start Tue Mar 31 2020 20:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 H 1.09003 * 110.45851 * 52.08396 * 3 2 1 5 5 C 1.54383 * 110.40915 * 289.67140 * 3 2 1 6 6 H 1.08997 * 110.32586 * 336.36737 * 5 3 2 7 7 N 1.46498 * 110.32325 * 98.47276 * 5 3 2 8 8 C 1.34777 * 120.00212 * 204.99702 * 7 5 3 9 9 O 1.21280 * 119.99442 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00235 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.46876 * 181.96909 * 10 8 7 12 12 C 1.53005 * 115.54786 * 278.88769 * 11 10 8 13 13 C 1.53003 * 117.49573 * 133.18995 * 11 10 8 14 14 C 1.52997 * 117.50315 * 64.56439 * 11 10 8 15 15 C 1.54260 * 105.05812 * 217.36890 * 5 3 2 16 16 C 1.54375 * 105.06207 * 0.02562 * 15 5 3 17 17 N 1.48560 * 110.40963 * 174.50219 * 3 2 1 18 18 C 1.46907 * 110.99374 * 277.81769 * 17 3 2 19 19 C 1.50704 * 109.46664 * 166.15534 * 18 17 3 20 20 O 1.21288 * 120.00152 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99771 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99979 * 179.97438 * 21 19 18 23 23 H 1.07992 * 119.99684 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99891 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00199 * 359.72837 * 24 22 21 26 26 Si 1.86805 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46727 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47160 * 119.99902 * 26 24 22 29 29 H 1.48497 * 109.47165 * 240.00292 * 26 24 22 30 30 H 1.08998 * 109.47100 * 305.61862 * 1 2 3 31 31 H 1.09003 * 109.47121 * 65.62458 * 1 2 3 32 32 H 1.09005 * 109.47114 * 185.62317 * 1 2 3 33 33 H 1.09004 * 109.47049 * 239.99596 * 2 1 3 34 34 H 1.08998 * 109.47291 * 120.00524 * 2 1 3 35 35 H 0.97005 * 119.99712 * 25.00048 * 7 5 3 36 36 H 1.09002 * 109.46784 * 301.97016 * 10 8 7 37 37 H 1.09000 * 109.46918 * 61.96785 * 10 8 7 38 38 H 1.09000 * 109.46773 * 63.51257 * 12 11 10 39 39 H 1.09006 * 109.46546 * 183.50467 * 12 11 10 40 40 H 1.08991 * 109.47359 * 303.50201 * 12 11 10 41 41 H 1.08995 * 117.50012 * 359.97438 * 13 11 10 42 42 H 1.09002 * 117.49979 * 145.01857 * 13 11 10 43 43 H 1.09000 * 117.50045 * 214.97612 * 14 11 10 44 44 H 1.09008 * 117.49571 * 0.02562 * 14 11 10 45 45 H 1.08998 * 110.32243 * 118.90038 * 15 5 3 46 46 H 1.08995 * 110.32422 * 241.10700 * 15 5 3 47 47 H 1.08998 * 110.41516 * 265.07775 * 16 15 5 48 48 H 1.09001 * 110.41554 * 142.63255 * 16 15 5 49 49 H 1.08997 * 109.47487 * 46.15873 * 18 17 3 50 50 H 1.08999 * 109.47152 * 286.15336 * 18 17 3 51 51 H 0.97003 * 120.00658 * 0.02562 * 21 19 18 52 52 H 0.96998 * 119.99818 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5753 2.0109 0.8057 5 6 1.7602 2.1124 -1.3625 6 1 1.6592 1.3574 -2.1420 7 7 0.5474 2.9307 -1.2876 8 6 -0.1616 3.1886 -2.4045 9 8 0.2045 2.7429 -3.4714 10 6 -1.4089 4.0308 -2.3276 11 6 -2.0447 4.1283 -3.7158 12 6 -1.4247 5.1659 -4.6540 13 6 -3.5528 3.8926 -3.8202 14 6 -2.5755 2.8373 -4.3422 15 6 2.9912 3.0023 -1.6318 16 6 3.9113 2.7947 -0.4097 17 7 3.5194 1.4690 0.1334 18 6 3.9235 1.3353 1.5394 19 6 5.3967 1.0260 1.6113 20 8 6.0459 0.9263 0.5917 21 7 5.9928 0.8603 2.8086 22 6 7.3329 0.5784 2.8741 23 1 7.9109 0.4896 1.9662 24 6 7.9473 0.4070 4.1085 25 7 7.2450 0.5203 5.2134 26 14 9.7734 0.0236 4.1977 27 1 10.3324 -0.0451 2.8237 28 1 10.4667 1.0915 4.9619 29 1 9.9726 -1.2811 4.8783 30 1 -0.3633 0.5985 0.8354 31 1 -0.3633 0.4241 -0.9361 32 1 -0.3633 -1.0228 0.1007 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.2545 3.2868 -0.4342 36 1 -2.1152 3.5716 -1.6359 37 1 -1.1518 5.0295 -1.9747 38 1 -0.3903 4.8938 -4.8638 39 1 -1.9888 5.1955 -5.5863 40 1 -1.4536 6.1471 -4.1806 41 1 -4.0919 3.6675 -2.9001 42 1 -4.1037 4.4767 -4.5575 43 1 -2.4834 2.7272 -5.4227 44 1 -2.4722 1.9184 -3.7649 45 1 3.4961 2.6842 -2.5438 46 1 2.6929 4.0479 -1.7082 47 1 3.7398 3.5746 0.3322 48 1 4.9568 2.7857 -0.7182 49 1 3.3594 0.5268 2.0044 50 1 3.7220 2.2684 2.0657 51 1 5.4735 0.9397 3.6242 52 1 7.6739 0.4003 6.0751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479638441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:15 Heat of formation + Delta-G solvation = -51.519852 kcal Electronic energy + Delta-G solvation = -29836.278300 eV Core-core repulsion = 25836.112113 eV Total energy + Delta-G solvation = -4000.166186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50397 -39.29975 -37.97979 -37.35327 -34.47440 -33.81375 -33.34480 -31.50367 -31.04894 -29.78364 -28.43409 -27.45103 -26.30543 -24.20736 -23.02980 -22.68166 -21.64610 -20.45574 -20.39066 -19.14761 -19.11460 -17.86902 -17.07678 -16.67545 -16.06406 -15.89599 -15.32486 -15.09577 -14.78221 -14.56903 -14.40580 -14.32764 -14.11673 -13.85039 -13.44845 -13.42551 -13.09538 -13.02369 -12.67805 -12.52694 -12.38275 -12.15805 -11.95972 -11.78430 -11.68098 -11.54070 -11.40795 -11.34935 -11.26894 -11.09227 -11.00312 -10.66382 -10.57665 -10.53266 -10.33378 -10.20987 -10.15721 -9.71220 -9.48970 -9.11986 -8.53947 -8.02528 -7.93539 -6.40317 -3.80809 2.52064 2.87862 3.17178 3.27591 3.35037 3.56347 3.92366 4.02152 4.24934 4.29321 4.40766 4.46206 4.58963 4.66888 4.69314 4.88432 4.98216 5.10544 5.13357 5.18689 5.21624 5.25088 5.26561 5.31033 5.35903 5.42229 5.47206 5.54783 5.60334 5.62412 5.70445 5.74683 5.75781 5.77776 5.86914 5.88138 5.97440 6.00656 6.01269 6.11622 6.15011 6.23643 6.32157 6.38890 6.41189 7.10025 7.17283 7.35550 7.56962 8.08424 8.11446 8.64051 9.20458 9.56693 10.09061 10.77683 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029779 B = 0.002014 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.028233 B =13897.125695 C =14302.089805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.056 3.944 4 H 0.053 0.947 5 C 0.149 3.851 6 H 0.101 0.899 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.527 6.527 10 C -0.106 4.106 11 C -0.112 4.112 12 C -0.113 4.113 13 C -0.180 4.180 14 C -0.154 4.154 15 C -0.132 4.132 16 C 0.039 3.961 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.574 6.574 21 N -0.568 5.568 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 8.080 -10.804 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.053 4.053 4 H 0.071 0.929 5 C 0.044 3.956 6 H 0.119 0.881 7 N -0.377 5.377 8 C 0.299 3.701 9 O -0.403 6.403 10 C -0.146 4.146 11 C -0.112 4.112 12 C -0.170 4.170 13 C -0.217 4.217 14 C -0.191 4.191 15 C -0.171 4.171 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.097 4.097 19 C 0.232 3.768 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.069 0.931 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.648 7.222 -12.372 25.959 hybrid contribution 0.107 0.700 1.833 1.965 sum -21.541 7.922 -10.540 25.255 Atomic orbital electron populations 1.21755 0.95829 1.01566 1.01449 1.21449 0.94828 0.95047 1.03425 1.22936 0.90041 0.96813 0.95504 0.92911 1.21715 0.83323 0.92759 0.97830 0.88090 1.46199 1.27189 1.53932 1.10428 1.20599 0.84764 0.80816 0.83943 1.90716 1.69873 1.51273 1.28392 1.21231 0.95313 1.00953 0.97079 1.21027 0.94851 0.99792 0.95537 1.21294 1.01393 0.96665 0.97623 1.23184 0.91550 1.03734 1.03217 1.22867 1.02227 0.93007 1.00959 1.22737 0.95573 0.99468 0.99345 1.23146 1.01433 0.89088 0.95249 1.65021 1.07408 1.30570 1.17004 1.22073 0.97161 1.01200 0.89223 1.19685 0.88070 0.84522 0.84548 1.90522 1.65331 1.55549 1.34295 1.41868 1.09836 1.62447 1.06345 1.19742 0.84237 1.44411 0.94166 0.87893 1.25249 1.00398 0.97635 0.94777 1.69619 1.36782 1.50339 0.97777 0.85810 0.82208 0.77868 0.78532 1.19228 1.20823 1.20782 0.93084 0.92829 0.92630 0.90857 0.91357 0.76925 0.88985 0.88510 0.91465 0.92577 0.92561 0.88948 0.88796 0.88839 0.89091 0.90315 0.91247 0.94360 0.88629 0.89376 0.93131 0.77598 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.71 37.16 0.36 -1.01 16 2 C -0.11 -1.28 5.58 -26.73 -0.15 -1.43 16 3 C 0.06 0.68 1.96 -66.07 -0.13 0.55 16 4 H 0.05 0.57 7.61 -51.93 -0.39 0.17 16 5 C 0.15 1.73 2.39 -66.55 -0.16 1.58 16 6 H 0.10 1.38 7.15 -51.93 -0.37 1.01 16 7 N -0.73 -6.43 4.78 -52.47 -0.25 -6.68 16 8 C 0.51 5.08 7.71 -10.99 -0.08 5.00 16 9 O -0.53 -7.26 14.67 5.56 0.08 -7.18 16 10 C -0.11 -0.73 5.64 -27.89 -0.16 -0.89 16 11 C -0.11 -0.88 1.60 -154.51 -0.25 -1.13 16 12 C -0.11 -0.89 9.68 37.16 0.36 -0.53 16 13 C -0.18 -1.18 9.87 -26.73 -0.26 -1.44 16 14 C -0.15 -1.30 9.05 -26.73 -0.24 -1.54 16 15 C -0.13 -1.70 6.79 -25.35 -0.17 -1.87 16 16 C 0.04 0.59 6.02 -2.20 -0.01 0.58 16 17 N -0.48 -7.71 4.59 -223.58 -1.03 -8.74 16 18 C 0.04 0.62 5.29 -4.97 -0.03 0.59 16 19 C 0.45 10.52 7.67 -10.99 -0.08 10.43 16 20 O -0.57 -15.61 15.12 5.55 0.08 -15.52 16 21 N -0.57 -14.35 5.29 -10.97 -0.06 -14.40 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 34 H 0.07 0.85 7.18 -51.93 -0.37 0.48 16 35 H 0.40 2.56 8.38 -40.82 -0.34 2.22 16 36 H 0.09 0.48 7.94 -51.93 -0.41 0.07 16 37 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 39 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 47 H 0.04 0.54 7.70 -51.93 -0.40 0.14 16 48 H 0.10 1.74 7.52 -51.93 -0.39 1.35 16 49 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 50 H 0.05 0.80 7.68 -51.93 -0.40 0.40 16 51 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 52 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 416.61 15.07 6.28 6.28 Total: -1.00 -32.72 416.61 -9.56 -42.29 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -9.12 Total: 10.76 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.25 Total: 0.93 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.61 Total: -53.66 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.72 -9.56 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479638441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.233 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds