Wall clock time and date at job start Tue Mar 31 2020 20:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46762 * 2 1 4 4 H 1.09000 * 110.46373 * 57.62890 * 3 2 1 5 5 C 1.54376 * 110.41138 * 295.21055 * 3 2 1 6 6 H 1.09004 * 110.32206 * 336.37037 * 5 3 2 7 7 N 1.46501 * 110.32121 * 98.47293 * 5 3 2 8 8 C 1.34775 * 119.99770 * 203.57179 * 7 5 3 9 9 O 1.21286 * 120.00122 * 4.67656 * 8 7 5 10 10 C 1.50707 * 120.00122 * 184.39792 * 8 7 5 11 11 C 1.53002 * 115.54656 * 40.77618 * 10 8 7 12 12 C 1.53007 * 109.46899 * 65.48350 * 11 10 8 13 13 C 1.52992 * 117.49962 * 255.06696 * 10 8 7 14 14 C 1.52992 * 117.49976 * 186.44267 * 10 8 7 15 15 C 1.54260 * 105.15155 * 217.42185 * 5 3 2 16 16 C 1.54383 * 105.05815 * 359.94889 * 15 5 3 17 17 N 1.48562 * 104.59329 * 23.85297 * 16 15 5 18 18 C 1.46901 * 110.99554 * 200.95737 * 17 16 15 19 19 C 1.50701 * 109.47221 * 284.00724 * 18 17 16 20 20 O 1.21288 * 120.00382 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99699 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99891 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00093 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00256 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99597 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00341 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46751 * 60.00174 * 26 24 22 28 28 H 1.48491 * 109.47455 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47339 * 300.00497 * 26 24 22 30 30 H 1.08997 * 109.46985 * 306.00610 * 1 2 3 31 31 H 1.08994 * 109.47329 * 66.01056 * 1 2 3 32 32 H 1.09000 * 109.46774 * 186.01094 * 1 2 3 33 33 H 1.08990 * 109.47191 * 239.99825 * 2 1 3 34 34 H 1.09000 * 109.47094 * 119.99555 * 2 1 3 35 35 H 0.96992 * 120.00422 * 23.57697 * 7 5 3 36 36 H 1.08993 * 109.47130 * 185.48637 * 11 10 8 37 37 H 1.08996 * 109.47128 * 305.48693 * 11 10 8 38 38 H 1.09001 * 109.46816 * 294.57378 * 12 11 10 39 39 H 1.08998 * 109.47142 * 54.57560 * 12 11 10 40 40 H 1.09008 * 109.46592 * 174.57314 * 12 11 10 41 41 H 1.09000 * 117.50268 * 0.02562 * 13 10 8 42 42 H 1.09006 * 117.49547 * 145.01652 * 13 10 8 43 43 H 1.09000 * 117.50267 * 214.97839 * 14 10 8 44 44 H 1.09005 * 117.50413 * 0.02562 * 14 10 8 45 45 H 1.08996 * 110.32722 * 118.84250 * 15 5 3 46 46 H 1.08996 * 110.32160 * 241.05815 * 15 5 3 47 47 H 1.09003 * 110.41105 * 142.63269 * 16 15 5 48 48 H 1.09000 * 110.40937 * 265.07242 * 16 15 5 49 49 H 1.08998 * 109.47077 * 44.01416 * 18 17 16 50 50 H 1.09001 * 109.46986 * 164.00721 * 18 17 16 51 51 H 0.97000 * 120.00236 * 0.02562 * 21 19 18 52 52 H 0.97008 * 119.99991 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6515 1.9841 0.8625 5 6 1.6384 2.1556 -1.3090 6 1 1.4657 1.4257 -2.1000 7 7 0.4385 2.9691 -1.0978 8 6 -0.3533 3.2859 -2.1415 9 8 -0.1204 2.8281 -3.2402 10 6 -1.5317 4.2039 -1.9420 11 6 -1.2870 5.4012 -1.0213 12 6 -0.2582 6.3352 -1.6619 13 6 -2.9247 3.5716 -1.9244 14 6 -2.4784 4.4058 -3.1268 15 6 2.8403 3.0553 -1.6632 16 6 3.8686 2.8124 -0.5376 17 7 3.5269 1.4695 -0.0019 18 6 4.0587 1.2936 1.3561 19 6 5.5432 1.0439 1.2858 20 8 6.1033 1.0157 0.2103 21 7 6.2486 0.8519 2.4181 22 6 7.5992 0.6252 2.3542 23 1 8.0979 0.6001 1.3965 24 6 8.3266 0.4278 3.5215 25 7 7.7197 0.4579 4.6868 26 14 10.1667 0.1183 3.4345 27 1 10.8334 1.2771 2.7880 28 1 10.7044 -0.0589 4.8072 29 1 10.4252 -1.1087 2.6388 30 1 -0.3633 0.6041 0.8313 31 1 -0.3634 0.4178 -0.9388 32 1 -0.3633 -1.0220 0.1076 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.2138 3.2799 -0.2069 36 1 -2.2222 5.9400 -0.8697 37 1 -0.9102 5.0498 -0.0608 38 1 0.7040 5.8271 -1.7252 39 1 -0.5907 6.6100 -2.6629 40 1 -0.1553 7.2340 -1.0537 41 1 -2.9890 2.4916 -2.0566 42 1 -3.6673 4.0085 -1.2566 43 1 -2.9273 5.3913 -3.2502 44 1 -2.2492 3.8743 -4.0505 45 1 3.2588 2.7660 -2.6271 46 1 2.5375 4.1023 -1.6798 47 1 4.8813 2.8144 -0.9409 48 1 3.7667 3.5692 0.2402 49 1 3.8690 2.1942 1.9401 50 1 3.5693 0.4431 1.8307 51 1 5.8007 0.8741 3.2782 52 1 8.2274 0.3197 5.5017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479641460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:02 Heat of formation + Delta-G solvation = -53.374472 kcal Electronic energy + Delta-G solvation = -30304.027913 eV Core-core repulsion = 26303.781305 eV Total energy + Delta-G solvation = -4000.246609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71361 -39.35743 -37.83973 -36.94966 -34.58875 -33.83558 -33.34407 -32.23908 -31.34137 -30.81341 -27.63718 -26.69920 -24.99931 -24.13647 -23.43015 -22.79567 -22.39940 -21.09470 -20.38558 -19.27381 -19.09722 -17.87497 -17.20478 -16.67033 -16.02376 -15.71085 -15.39337 -15.06184 -14.73149 -14.56019 -14.35293 -14.25198 -14.13213 -13.94048 -13.63610 -13.43993 -13.25379 -13.07522 -12.74679 -12.54637 -12.16511 -12.03107 -12.00517 -11.82044 -11.64766 -11.56494 -11.45023 -11.35372 -11.27635 -11.07151 -10.99844 -10.80123 -10.66156 -10.52005 -10.43332 -10.37825 -10.19838 -9.89630 -9.47030 -9.14163 -8.53520 -8.02958 -7.93533 -6.40140 -3.80735 2.32533 2.88329 3.21112 3.26487 3.31097 3.43287 3.91964 3.99385 4.17666 4.24039 4.38499 4.40269 4.47976 4.57724 4.68893 4.92124 4.98632 5.06799 5.10866 5.14508 5.20077 5.23285 5.24229 5.26565 5.32315 5.42204 5.46690 5.48577 5.54084 5.58966 5.63537 5.68425 5.75326 5.77552 5.79344 5.85943 5.91975 5.98601 6.01416 6.12350 6.15417 6.24130 6.32441 6.40362 6.40608 7.09860 7.17130 7.33717 7.56516 8.06792 8.07805 8.63993 9.20153 9.56443 10.08871 10.77705 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002257 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.555820 B =12401.446272 C =12754.592247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.057 3.943 4 H 0.053 0.947 5 C 0.147 3.853 6 H 0.101 0.899 7 N -0.716 5.716 8 C 0.554 3.446 9 O -0.537 6.537 10 C -0.164 4.164 11 C -0.082 4.082 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.143 4.143 15 C -0.133 4.133 16 C 0.039 3.961 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.575 6.575 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.904 5.904 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.994 8.862 -6.960 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.052 4.052 4 H 0.071 0.929 5 C 0.043 3.957 6 H 0.119 0.881 7 N -0.367 5.367 8 C 0.340 3.660 9 O -0.414 6.414 10 C -0.167 4.167 11 C -0.119 4.119 12 C -0.211 4.211 13 C -0.190 4.190 14 C -0.181 4.181 15 C -0.172 4.172 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.097 4.097 19 C 0.232 3.768 20 O -0.458 6.458 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.107 0.893 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.084 8.052 -8.605 25.031 hybrid contribution 0.313 0.674 1.769 1.919 sum -21.771 8.726 -6.836 24.430 Atomic orbital electron populations 1.21752 0.95767 1.01518 1.01553 1.21441 0.94899 0.94992 1.03411 1.22945 0.89849 0.96703 0.95730 0.92898 1.21739 0.83477 0.92580 0.97944 0.88058 1.46055 1.25936 1.54124 1.10607 1.19415 0.82254 0.80168 0.84194 1.90708 1.72221 1.53524 1.24912 1.21579 0.91047 0.99549 1.04566 1.21048 1.00315 0.93543 0.97026 1.21765 0.99080 0.99145 1.01079 1.23054 0.94065 1.00170 1.01703 1.22994 0.99997 1.01789 0.93271 1.22756 0.95121 0.99327 0.99987 1.23148 1.00907 0.88834 0.95970 1.65072 1.05213 1.29220 1.20475 1.22071 0.96423 1.01352 0.89807 1.19671 0.87549 0.84480 0.85145 1.90518 1.71081 1.55756 1.28441 1.41852 1.08557 1.62954 1.07030 1.19638 0.82878 1.45421 0.94747 0.88011 1.25245 1.00560 0.97524 0.94658 1.69605 1.37036 1.50222 0.97663 0.85927 0.82136 0.79149 0.77067 1.19952 1.21018 1.19891 0.93103 0.92768 0.92629 0.90717 0.91444 0.76732 0.90928 0.91328 0.92527 0.92345 0.92255 0.88323 0.87843 0.88038 0.87485 0.90269 0.91241 0.88443 0.94361 0.93199 0.89333 0.77581 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.52 37.16 0.35 -1.06 16 2 C -0.11 -1.29 5.55 -26.73 -0.15 -1.44 16 3 C 0.06 0.70 2.04 -65.98 -0.13 0.57 16 4 H 0.05 0.58 7.60 -51.93 -0.39 0.19 16 5 C 0.15 1.77 2.18 -66.55 -0.15 1.62 16 6 H 0.10 1.42 7.21 -51.93 -0.37 1.04 16 7 N -0.72 -6.88 4.54 -52.46 -0.24 -7.11 16 8 C 0.55 6.05 6.83 -10.98 -0.08 5.98 16 9 O -0.54 -8.03 15.92 5.55 0.09 -7.94 16 10 C -0.16 -1.30 1.99 -155.66 -0.31 -1.61 16 11 C -0.08 -0.50 5.61 -26.73 -0.15 -0.65 16 12 C -0.15 -1.08 9.71 37.16 0.36 -0.72 16 13 C -0.15 -1.00 9.92 -26.74 -0.27 -1.27 16 14 C -0.14 -1.07 9.76 -26.74 -0.26 -1.33 16 15 C -0.13 -1.74 6.79 -25.35 -0.17 -1.91 16 16 C 0.04 0.61 5.96 -2.18 -0.01 0.59 16 17 N -0.48 -7.73 4.64 -223.43 -1.04 -8.76 16 18 C 0.04 0.62 5.28 -4.97 -0.03 0.59 16 19 C 0.45 10.50 7.64 -10.98 -0.08 10.41 16 20 O -0.57 -15.57 14.92 5.55 0.08 -15.49 16 21 N -0.57 -14.33 5.29 -10.96 -0.06 -14.38 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.55 7.40 -51.93 -0.38 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.07 0.82 7.29 -51.93 -0.38 0.44 16 35 H 0.40 3.00 7.29 -40.82 -0.30 2.70 16 36 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.07 0.37 7.18 -51.93 -0.37 -0.01 16 38 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.98 7.68 -51.93 -0.40 0.58 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 47 H 0.10 1.80 7.34 -51.93 -0.38 1.42 16 48 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.05 0.79 7.73 -51.93 -0.40 0.39 16 50 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 51 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 415.32 15.07 6.26 6.26 Total: -1.00 -32.60 415.32 -9.55 -42.14 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -9.03 Total: 11.19 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.61 Total: -54.10 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.60 -9.55 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479641460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.232 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds