Wall clock time and date at job start Tue Mar 31 2020 20:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46762 * 2 1 4 4 H 1.09000 * 110.46373 * 57.62890 * 3 2 1 5 5 C 1.54376 * 110.41138 * 295.21055 * 3 2 1 6 6 H 1.09004 * 110.32206 * 336.37037 * 5 3 2 7 7 N 1.46501 * 110.32121 * 98.47293 * 5 3 2 8 8 C 1.34775 * 119.99770 * 203.57179 * 7 5 3 9 9 O 1.21286 * 120.00122 * 4.67656 * 8 7 5 10 10 C 1.50707 * 120.00122 * 184.39792 * 8 7 5 11 11 C 1.53002 * 115.54656 * 40.77618 * 10 8 7 12 12 C 1.53007 * 109.46899 * 65.48350 * 11 10 8 13 13 C 1.52992 * 117.49962 * 255.06696 * 10 8 7 14 14 C 1.52992 * 117.49976 * 186.44267 * 10 8 7 15 15 C 1.54260 * 105.15155 * 217.42185 * 5 3 2 16 16 C 1.54383 * 105.05815 * 359.94889 * 15 5 3 17 17 N 1.48562 * 104.59329 * 23.85297 * 16 15 5 18 18 C 1.46901 * 110.99554 * 200.95737 * 17 16 15 19 19 C 1.50701 * 109.47221 * 284.00724 * 18 17 16 20 20 O 1.21288 * 120.00382 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99699 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99891 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00093 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00256 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99597 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00341 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46751 * 60.00174 * 26 24 22 28 28 H 1.48491 * 109.47455 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47339 * 300.00497 * 26 24 22 30 30 H 1.08997 * 109.46985 * 306.00610 * 1 2 3 31 31 H 1.08994 * 109.47329 * 66.01056 * 1 2 3 32 32 H 1.09000 * 109.46774 * 186.01094 * 1 2 3 33 33 H 1.08990 * 109.47191 * 239.99825 * 2 1 3 34 34 H 1.09000 * 109.47094 * 119.99555 * 2 1 3 35 35 H 0.96992 * 120.00422 * 23.57697 * 7 5 3 36 36 H 1.08993 * 109.47130 * 185.48637 * 11 10 8 37 37 H 1.08996 * 109.47128 * 305.48693 * 11 10 8 38 38 H 1.09001 * 109.46816 * 294.57378 * 12 11 10 39 39 H 1.08998 * 109.47142 * 54.57560 * 12 11 10 40 40 H 1.09008 * 109.46592 * 174.57314 * 12 11 10 41 41 H 1.09000 * 117.50268 * 0.02562 * 13 10 8 42 42 H 1.09006 * 117.49547 * 145.01652 * 13 10 8 43 43 H 1.09000 * 117.50267 * 214.97839 * 14 10 8 44 44 H 1.09005 * 117.50413 * 0.02562 * 14 10 8 45 45 H 1.08996 * 110.32722 * 118.84250 * 15 5 3 46 46 H 1.08996 * 110.32160 * 241.05815 * 15 5 3 47 47 H 1.09003 * 110.41105 * 142.63269 * 16 15 5 48 48 H 1.09000 * 110.40937 * 265.07242 * 16 15 5 49 49 H 1.08998 * 109.47077 * 44.01416 * 18 17 16 50 50 H 1.09001 * 109.46986 * 164.00721 * 18 17 16 51 51 H 0.97000 * 120.00236 * 0.02562 * 21 19 18 52 52 H 0.97008 * 119.99991 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6515 1.9841 0.8625 5 6 1.6384 2.1556 -1.3090 6 1 1.4657 1.4257 -2.1000 7 7 0.4385 2.9691 -1.0978 8 6 -0.3533 3.2859 -2.1415 9 8 -0.1204 2.8281 -3.2402 10 6 -1.5317 4.2039 -1.9420 11 6 -1.2870 5.4012 -1.0213 12 6 -0.2582 6.3352 -1.6619 13 6 -2.9247 3.5716 -1.9244 14 6 -2.4784 4.4058 -3.1268 15 6 2.8403 3.0553 -1.6632 16 6 3.8686 2.8124 -0.5376 17 7 3.5269 1.4695 -0.0019 18 6 4.0587 1.2936 1.3561 19 6 5.5432 1.0439 1.2858 20 8 6.1033 1.0157 0.2103 21 7 6.2486 0.8519 2.4181 22 6 7.5992 0.6252 2.3542 23 1 8.0979 0.6001 1.3965 24 6 8.3266 0.4278 3.5215 25 7 7.7197 0.4579 4.6868 26 14 10.1667 0.1183 3.4345 27 1 10.8334 1.2771 2.7880 28 1 10.7044 -0.0589 4.8072 29 1 10.4252 -1.1087 2.6388 30 1 -0.3633 0.6041 0.8313 31 1 -0.3634 0.4178 -0.9388 32 1 -0.3633 -1.0220 0.1076 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.2138 3.2799 -0.2069 36 1 -2.2222 5.9400 -0.8697 37 1 -0.9102 5.0498 -0.0608 38 1 0.7040 5.8271 -1.7252 39 1 -0.5907 6.6100 -2.6629 40 1 -0.1553 7.2340 -1.0537 41 1 -2.9890 2.4916 -2.0566 42 1 -3.6673 4.0085 -1.2566 43 1 -2.9273 5.3913 -3.2502 44 1 -2.2492 3.8743 -4.0505 45 1 3.2588 2.7660 -2.6271 46 1 2.5375 4.1023 -1.6798 47 1 4.8813 2.8144 -0.9409 48 1 3.7667 3.5692 0.2402 49 1 3.8690 2.1942 1.9401 50 1 3.5693 0.4431 1.8307 51 1 5.8007 0.8741 3.2782 52 1 8.2274 0.3197 5.5017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479641460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:01 Heat of formation + Delta-G solvation = -75.894730 kcal Electronic energy + Delta-G solvation = -30305.004465 eV Core-core repulsion = 26303.781305 eV Total energy + Delta-G solvation = -4001.223161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62989 -40.56852 -39.46417 -37.76326 -36.03997 -35.45379 -34.33063 -33.29894 -32.79877 -32.08447 -28.68150 -28.19460 -26.23843 -25.40988 -24.19800 -23.48132 -23.17401 -22.25699 -21.41429 -20.92266 -20.06975 -19.85458 -18.04782 -17.70343 -17.57514 -16.72967 -16.53619 -16.35521 -16.07655 -15.89202 -15.70746 -15.40191 -15.04243 -14.87163 -14.76310 -14.65959 -14.28658 -14.01625 -13.91560 -13.67178 -13.41501 -13.31442 -13.00685 -12.95142 -12.73565 -12.58885 -12.48486 -12.41911 -12.36544 -12.33551 -12.12354 -12.07253 -12.01094 -11.85388 -11.53632 -11.46847 -11.32845 -10.95163 -10.76291 -10.33677 -10.07830 -9.99421 -9.39626 -8.45552 -5.93748 1.39561 1.41257 1.51195 1.51865 2.01343 2.07856 2.29829 2.81106 2.84348 3.20947 3.32195 3.39486 3.62968 3.74091 3.79162 3.86632 3.98774 4.00975 4.06875 4.18667 4.27289 4.32999 4.37783 4.42362 4.50780 4.54104 4.58042 4.58773 4.61991 4.65996 4.76511 4.86164 4.93927 4.99769 5.01155 5.05710 5.07876 5.11050 5.16751 5.20204 5.24337 5.26664 5.39361 5.41161 5.42081 5.43554 5.83059 5.94110 6.08715 6.53818 6.62675 7.14805 7.24732 7.58545 8.15361 8.71674 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002257 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.555820 B =12401.446272 C =12754.592247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.066 3.934 4 H 0.082 0.918 5 C 0.159 3.841 6 H 0.079 0.921 7 N -0.700 5.700 8 C 0.551 3.449 9 O -0.585 6.585 10 C -0.169 4.169 11 C -0.077 4.077 12 C -0.155 4.155 13 C -0.136 4.136 14 C -0.151 4.151 15 C -0.124 4.124 16 C 0.043 3.957 17 N -0.503 5.503 18 C 0.049 3.951 19 C 0.443 3.557 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.076 0.924 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.300 9.942 -4.936 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.099 0.901 5 C 0.053 3.947 6 H 0.097 0.903 7 N -0.352 5.352 8 C 0.339 3.661 9 O -0.465 6.465 10 C -0.173 4.173 11 C -0.114 4.114 12 C -0.212 4.212 13 C -0.173 4.173 14 C -0.189 4.189 15 C -0.163 4.163 16 C -0.085 4.085 17 N -0.228 5.228 18 C -0.082 4.082 19 C 0.230 3.770 20 O -0.502 6.502 21 N -0.213 5.213 22 C -0.461 4.461 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.251 0.749 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.427 9.145 -6.535 26.889 hybrid contribution 1.014 0.329 1.061 1.504 sum -23.412 9.474 -5.474 25.843 Atomic orbital electron populations 1.21667 0.93680 1.02396 1.01867 1.21447 0.96627 0.94312 1.02353 1.22962 0.87207 0.97483 0.96619 0.90071 1.21409 0.83937 0.92114 0.97278 0.90309 1.45856 1.24786 1.53308 1.11272 1.20013 0.82784 0.79835 0.83468 1.90694 1.73543 1.55401 1.26815 1.21586 0.90210 0.99892 1.05565 1.21088 1.01067 0.92484 0.96747 1.21777 0.98457 0.99768 1.01204 1.23153 0.93309 0.99719 1.01095 1.23032 1.00406 1.02884 0.92562 1.22657 0.94972 1.00404 0.98313 1.23016 0.99401 0.89158 0.96933 1.64964 1.07979 1.29873 1.19947 1.21909 0.91784 1.03369 0.91135 1.20767 0.90024 0.82305 0.83894 1.90495 1.72780 1.57040 1.29934 1.41911 1.08011 1.63593 1.07813 1.19580 0.84500 1.47752 0.94265 0.90583 1.25989 1.04532 0.96643 0.94054 1.69660 1.38495 1.49918 0.98037 0.85030 0.77105 0.78808 0.77649 1.19798 1.19393 1.19886 0.91099 0.93634 0.91932 0.92871 0.91469 0.74943 0.88730 0.90013 0.94428 0.93014 0.91050 0.89244 0.84976 0.85987 0.89977 0.92063 0.89750 0.92375 0.92787 0.90585 0.87171 0.76994 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.52 71.98 0.69 -1.64 16 2 C -0.11 -2.43 5.55 30.60 0.17 -2.26 16 3 C 0.07 1.51 2.04 45.03 0.09 1.60 16 4 H 0.08 1.46 7.60 -2.39 -0.02 1.44 16 5 C 0.16 3.72 2.18 45.89 0.10 3.82 16 6 H 0.08 2.27 7.21 -2.38 -0.02 2.25 16 7 N -0.70 -12.25 4.54 -438.28 -1.99 -14.24 16 8 C 0.55 11.56 6.83 87.66 0.60 12.16 16 9 O -0.58 -17.92 15.92 -3.05 -0.05 -17.97 16 10 C -0.17 -2.32 1.99 -52.93 -0.11 -2.42 16 11 C -0.08 -0.68 5.61 30.60 0.17 -0.50 16 12 C -0.15 -1.85 9.71 71.98 0.70 -1.15 16 13 C -0.14 -1.41 9.92 30.59 0.30 -1.10 16 14 C -0.15 -2.04 9.76 30.59 0.30 -1.74 16 15 C -0.12 -3.29 6.79 31.49 0.21 -3.07 16 16 C 0.04 1.34 5.96 86.45 0.52 1.85 16 17 N -0.50 -16.12 4.64 -860.81 -3.99 -20.11 16 18 C 0.05 1.67 5.28 85.56 0.45 2.12 16 19 C 0.44 21.15 7.64 87.66 0.67 21.82 16 20 O -0.62 -34.77 14.92 -3.05 -0.05 -34.81 16 21 N -0.58 -29.52 5.29 -306.99 -1.62 -31.14 16 22 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 26 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.85 7.40 -2.39 -0.02 0.84 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.07 1.51 7.29 -2.39 -0.02 1.49 16 35 H 0.41 4.84 7.29 -92.71 -0.68 4.17 16 36 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 37 H 0.08 0.53 7.18 -2.39 -0.02 0.51 16 38 H 0.04 0.58 7.89 -2.39 -0.02 0.56 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.54 7.68 -2.38 -0.02 1.52 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 1.96 7.95 -2.39 -0.02 1.94 16 47 H 0.06 2.27 7.34 -2.39 -0.02 2.25 16 48 H 0.05 1.49 7.73 -2.39 -0.02 1.48 16 49 H 0.08 2.20 7.73 -2.39 -0.02 2.18 16 50 H 0.11 3.26 7.15 -2.39 -0.02 3.25 16 51 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 52 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -74.13 415.32 0.27 -73.86 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.49 Total: 37.21 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.15 Total: 11.16 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -7.32 Total: -114.72 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.09 Total: -52.78 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.13 0.27 -73.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479641460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.038 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds