Wall clock time and date at job start Tue Mar 31 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47191 * 2 1 4 4 H 1.08995 * 109.47014 * 304.82811 * 3 2 1 5 5 C 1.53003 * 109.46899 * 184.83156 * 3 2 1 6 6 N 1.46504 * 109.47069 * 184.99995 * 5 3 2 7 7 C 1.34775 * 120.00300 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.52307 * 115.91292 * 248.28767 * 9 7 6 11 11 C 1.52075 * 115.92882 * 179.97438 * 9 7 6 12 12 H 1.08996 * 117.25354 * 0.46360 * 11 9 7 13 13 C 1.52713 * 120.52189 * 210.73821 * 11 9 7 14 14 C 1.52880 * 110.15179 * 21.47248 * 13 11 9 15 15 C 1.53294 * 108.58072 * 305.47364 * 14 13 11 16 16 C 1.52072 * 114.64295 * 33.37850 * 9 7 6 17 17 N 1.46898 * 109.47158 * 64.83286 * 3 2 1 18 18 C 1.46898 * 110.99916 * 62.70502 * 17 3 2 19 19 C 1.50700 * 109.47272 * 180.12132 * 18 17 3 20 20 O 1.21302 * 119.99825 * 0.02562 * 19 18 17 21 21 N 1.34770 * 120.00579 * 180.02562 * 19 18 17 22 22 C 1.37102 * 120.00318 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99679 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99578 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00746 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99425 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47413 * 90.00203 * 26 24 22 28 28 H 1.48502 * 109.47160 * 210.00089 * 26 24 22 29 29 H 1.48505 * 109.47220 * 329.99761 * 26 24 22 30 30 H 1.08998 * 109.47289 * 304.45043 * 1 2 3 31 31 H 1.09006 * 109.47234 * 64.45556 * 1 2 3 32 32 H 1.09003 * 109.47680 * 184.45029 * 1 2 3 33 33 H 1.09004 * 109.47226 * 240.00011 * 2 1 3 34 34 H 1.09001 * 109.47424 * 119.99900 * 2 1 3 35 35 H 1.09001 * 109.47305 * 304.99818 * 5 3 2 36 36 H 1.08994 * 109.47202 * 65.00494 * 5 3 2 37 37 H 0.97004 * 119.99411 * 0.02562 * 6 5 3 38 38 H 1.09001 * 117.53640 * 0.84738 * 10 9 7 39 39 H 1.08998 * 117.54032 * 146.10401 * 10 9 7 40 40 H 1.09001 * 109.35226 * 141.67845 * 13 11 9 41 41 H 1.08996 * 109.35502 * 261.26125 * 13 11 9 42 42 H 1.08996 * 109.61773 * 65.20661 * 14 13 11 43 43 H 1.09006 * 109.61494 * 185.56556 * 14 13 11 44 44 H 1.09006 * 109.62059 * 194.17605 * 15 14 13 45 45 H 1.08997 * 109.62288 * 314.71764 * 15 14 13 46 46 H 1.08995 * 109.26811 * 285.90029 * 16 9 7 47 47 H 1.09012 * 109.26514 * 45.36077 * 16 9 7 48 48 H 1.00901 * 110.99982 * 186.65902 * 17 3 2 49 49 H 1.09000 * 109.47418 * 300.12202 * 18 17 3 50 50 H 1.09001 * 109.47651 * 60.12260 * 18 17 3 51 51 H 0.97004 * 120.00026 * 359.97438 * 21 19 18 52 52 H 0.96995 * 120.00398 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6077 1.9806 -0.8435 5 6 3.5651 1.4441 -0.1215 6 7 4.0631 2.8167 -0.0017 7 6 5.3859 3.0629 -0.0792 8 8 6.1641 2.1481 -0.2476 9 6 5.8980 4.4748 0.0447 10 6 6.4980 5.0783 -1.2185 11 6 7.4057 4.6464 -0.0557 12 1 8.0008 3.7474 -0.2161 13 6 8.1101 5.7721 0.6984 14 6 7.2428 6.2486 1.8637 15 6 5.8616 6.6315 1.3199 16 6 5.0924 5.3617 0.9810 17 7 1.6479 2.1005 1.2535 18 6 2.2656 1.4393 2.4107 19 6 1.8390 2.1385 3.6757 20 8 1.0932 3.0935 3.6188 21 7 2.2860 1.7029 4.8701 22 6 1.8974 2.3387 6.0210 23 1 1.2334 3.1889 5.9702 24 6 2.3579 1.8891 7.2524 25 7 3.1654 0.8543 7.3142 26 14 1.8290 2.7559 8.8203 27 1 0.5851 2.1303 9.3364 28 1 2.9030 2.6356 9.8389 29 1 1.5787 4.1911 8.5323 30 1 -0.3634 0.5813 0.8474 31 1 -0.3634 0.4432 -0.9273 32 1 -0.3634 -1.0246 0.0797 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9935 0.8317 0.6719 36 1 3.8528 1.0366 -1.0906 37 1 3.4406 3.5483 0.1334 38 1 6.5034 4.4625 -2.1178 39 1 6.3610 6.1475 -1.3803 40 1 9.0632 5.4084 1.0825 41 1 8.2909 6.6046 0.0185 42 1 7.1390 5.4467 2.5945 43 1 7.7067 7.1153 2.3348 44 1 5.3173 7.2023 2.0724 45 1 5.9770 7.2295 0.4160 46 1 4.1520 5.6316 0.5005 47 1 4.8818 4.8160 1.9009 48 1 1.8773 3.0829 1.2333 49 1 1.9475 0.3974 2.4465 50 1 3.3508 1.4848 2.3188 51 1 2.8821 0.9390 4.9157 52 1 3.4866 0.5403 8.1738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481848090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:51 Heat of formation + Delta-G solvation = -68.226800 kcal Electronic energy + Delta-G solvation = -30534.138924 eV Core-core repulsion = 26533.248270 eV Total energy + Delta-G solvation = -4000.890654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.89889 -39.10287 -38.14017 -37.15595 -34.17429 -33.89269 -33.24765 -31.95565 -31.21542 -31.12986 -28.65424 -26.61177 -25.11811 -24.39494 -24.07426 -22.70373 -21.63485 -20.67618 -20.24024 -19.09424 -18.58294 -17.91690 -17.66473 -16.80456 -16.04862 -15.68092 -15.28636 -14.95154 -14.68027 -14.50816 -14.29570 -14.22393 -14.13140 -13.87279 -13.74746 -13.52369 -13.46607 -13.17350 -12.77136 -12.61547 -12.20738 -12.15309 -12.13571 -11.93009 -11.66738 -11.47635 -11.30988 -11.18010 -11.05057 -11.02601 -10.86367 -10.72558 -10.57209 -10.40162 -10.22083 -10.16414 -9.91013 -9.72015 -9.51176 -9.17000 -8.49288 -8.11123 -7.96478 -6.41766 -3.82813 2.43255 3.00453 3.17308 3.26083 3.31421 3.56702 3.89985 4.08581 4.29512 4.34809 4.43075 4.52362 4.61528 4.67203 4.84319 4.87600 5.02019 5.04729 5.11461 5.18922 5.25548 5.26108 5.33106 5.35265 5.42646 5.50301 5.51210 5.58152 5.66030 5.71963 5.75879 5.80254 5.84315 5.91294 5.94633 5.98501 6.00503 6.04738 6.08211 6.11306 6.20791 6.22463 6.30027 6.32298 6.53841 7.12984 7.36242 7.54269 7.54718 8.05573 8.13990 8.60492 9.17369 9.54006 10.05002 10.75873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007850 B = 0.003795 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.883718 B = 7376.150458 C = 9991.998930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.079 3.921 6 N -0.724 5.724 7 C 0.548 3.452 8 O -0.541 6.541 9 C -0.142 4.142 10 C -0.157 4.157 11 C -0.112 4.112 12 H 0.115 0.885 13 C -0.088 4.088 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.086 4.086 17 N -0.652 5.652 18 C 0.043 3.957 19 C 0.441 3.559 20 O -0.585 6.585 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.345 0.655 49 H 0.089 0.911 50 H 0.046 0.954 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 5.876 -17.331 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.046 4.046 6 N -0.376 5.376 7 C 0.335 3.665 8 O -0.418 6.418 9 C -0.145 4.145 10 C -0.195 4.195 11 C -0.130 4.130 12 H 0.133 0.867 13 C -0.126 4.126 14 C -0.160 4.160 15 C -0.155 4.155 16 C -0.124 4.124 17 N -0.284 5.284 18 C -0.090 4.090 19 C 0.227 3.773 20 O -0.469 6.469 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.165 0.835 49 H 0.107 0.893 50 H 0.064 0.936 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.528 5.411 -17.255 18.910 hybrid contribution 0.744 0.332 0.856 1.182 sum 6.272 5.743 -16.399 18.473 Atomic orbital electron populations 1.21654 0.94641 1.01218 1.02680 1.21515 0.97336 0.94309 1.02068 1.21971 0.90554 0.97307 0.93636 0.89315 1.22206 0.96559 0.83254 1.02600 1.45907 1.07480 1.09842 1.74356 1.19650 0.81973 0.89478 0.75429 1.90683 1.55981 1.45943 1.49174 1.21060 0.97167 0.93871 1.02407 1.23222 1.03389 1.01260 0.91588 1.22279 0.90207 1.00928 0.99623 0.86694 1.21087 0.98266 0.96281 0.96954 1.21589 0.95400 1.01326 0.97728 1.21454 0.96155 0.96774 1.01113 1.20762 0.97559 0.95563 0.98510 1.60253 1.61515 1.06692 0.99936 1.21784 0.96940 0.99572 0.90664 1.19784 0.85786 0.87324 0.84454 1.90518 1.39582 1.30100 1.86704 1.41862 1.43267 1.29957 1.04796 1.19686 1.27210 1.13026 0.83003 0.87944 1.25254 0.96566 0.96569 0.99464 1.69608 1.33058 1.24785 1.26720 0.85877 0.78085 0.79698 0.80741 1.20384 1.20940 1.19430 0.90705 0.93353 0.93403 0.91821 0.91374 0.90870 0.91238 0.76502 0.88634 0.87773 0.91276 0.91405 0.91293 0.91605 0.91010 0.91874 0.91073 0.90560 0.83543 0.89268 0.93572 0.77520 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.85 37.15 0.37 -1.26 16 2 C -0.11 -1.23 5.25 -26.74 -0.14 -1.37 16 3 C 0.08 0.86 2.72 -67.71 -0.18 0.67 16 4 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 5 C 0.08 0.94 4.56 -4.04 -0.02 0.93 16 6 N -0.72 -8.61 5.25 -60.29 -0.32 -8.92 16 7 C 0.55 7.53 7.28 -10.99 -0.08 7.45 16 8 O -0.54 -9.29 16.07 5.56 0.09 -9.21 16 9 C -0.14 -1.59 2.49 -156.96 -0.39 -1.98 16 10 C -0.16 -1.47 9.27 -26.72 -0.25 -1.72 16 11 C -0.11 -1.20 5.66 -90.87 -0.51 -1.71 16 12 H 0.12 1.42 7.50 -51.93 -0.39 1.03 16 13 C -0.09 -0.79 5.83 -26.94 -0.16 -0.95 16 14 C -0.12 -1.16 5.93 -26.64 -0.16 -1.32 16 15 C -0.12 -1.08 5.67 -26.95 -0.15 -1.23 16 16 C -0.09 -0.91 4.68 -27.57 -0.13 -1.03 16 17 N -0.65 -9.49 5.36 -107.99 -0.58 -10.07 16 18 C 0.04 0.73 5.38 -4.98 -0.03 0.71 16 19 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 20 O -0.58 -15.32 15.78 5.54 0.09 -15.23 16 21 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 26 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.07 1.03 7.63 -51.93 -0.40 0.64 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.80 6.23 -51.93 -0.32 0.48 16 35 H 0.07 1.01 6.66 -51.93 -0.35 0.66 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 4.20 6.16 -40.82 -0.25 3.95 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.80 7.26 -51.93 -0.38 0.42 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 42 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.50 7.11 -51.93 -0.37 0.13 16 46 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 47 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 48 H 0.34 5.08 7.07 -39.29 -0.28 4.80 16 49 H 0.09 1.45 6.26 -51.93 -0.33 1.12 16 50 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 51 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 52 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -32.03 406.19 -9.80 -41.83 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -8.69 Total: 18.24 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.16 Total: -0.66 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.23 Total: -57.08 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.18 Total: -24.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.03 -9.80 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481848090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.392 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds