Wall clock time and date at job start Tue Mar 31 2020 20:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 H 1.08999 * 109.46940 * 54.76930 * 3 2 1 5 5 C 1.52996 * 109.47006 * 294.76597 * 3 2 1 6 6 N 1.46502 * 109.47122 * 185.00041 * 5 3 2 7 7 C 1.34770 * 120.00394 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99749 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00266 * 180.02562 * 7 6 5 10 10 C 1.52311 * 115.91301 * 111.71329 * 9 7 6 11 11 C 1.52070 * 115.93176 * 179.97438 * 9 7 6 12 12 H 1.09001 * 117.25343 * 0.64354 * 11 9 7 13 13 C 1.52712 * 120.52321 * 150.35897 * 11 9 7 14 14 C 1.52883 * 110.15155 * 338.53384 * 13 11 9 15 15 C 1.53303 * 108.57885 * 54.52340 * 14 13 11 16 16 C 1.52070 * 114.63781 * 326.62201 * 9 7 6 17 17 N 1.46899 * 109.46464 * 174.76805 * 3 2 1 18 18 C 1.46898 * 111.00100 * 273.95769 * 17 3 2 19 19 C 1.50705 * 109.47207 * 185.26933 * 18 17 3 20 20 O 1.21292 * 119.99793 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99973 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99725 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00123 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99470 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00159 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99564 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46781 * 60.00322 * 26 24 22 28 28 H 1.48500 * 109.46865 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47092 * 300.00327 * 26 24 22 30 30 H 1.08998 * 109.46907 * 185.73807 * 1 2 3 31 31 H 1.08997 * 109.47429 * 305.74333 * 1 2 3 32 32 H 1.09010 * 109.46863 * 65.74361 * 1 2 3 33 33 H 1.09004 * 109.46635 * 119.99737 * 2 1 3 34 34 H 1.08998 * 109.46951 * 239.99653 * 2 1 3 35 35 H 1.08992 * 109.47372 * 305.00501 * 5 3 2 36 36 H 1.09000 * 109.47106 * 65.00753 * 5 3 2 37 37 H 0.97005 * 119.99862 * 0.02562 * 6 5 3 38 38 H 1.08998 * 117.53578 * 213.90200 * 10 9 7 39 39 H 1.08997 * 117.53456 * 359.14900 * 10 9 7 40 40 H 1.08997 * 109.35394 * 98.74107 * 13 11 9 41 41 H 1.09002 * 109.35960 * 218.46430 * 13 11 9 42 42 H 1.08997 * 109.61639 * 174.24198 * 14 13 11 43 43 H 1.08999 * 109.61957 * 294.79310 * 14 13 11 44 44 H 1.09002 * 109.62116 * 45.28507 * 15 14 13 45 45 H 1.08999 * 109.61532 * 165.64770 * 15 14 13 46 46 H 1.08997 * 109.26556 * 314.63669 * 16 9 7 47 47 H 1.09001 * 109.26776 * 74.10298 * 16 9 7 48 48 H 1.00894 * 111.00336 * 37.91945 * 17 3 2 49 49 H 1.08999 * 109.47211 * 305.26754 * 18 17 3 50 50 H 1.08998 * 109.47207 * 65.26411 * 18 17 3 51 51 H 0.96993 * 120.00233 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9826 0.8394 5 6 1.6402 2.1247 -1.3098 6 7 2.2292 3.4651 -1.3619 7 6 2.0104 4.2564 -2.4307 8 8 1.3255 3.8589 -3.3493 9 6 2.6168 5.6349 -2.4844 10 6 3.7073 5.8422 -3.5274 11 6 2.3107 6.4478 -3.7327 12 1 1.6731 5.9849 -4.4859 13 6 2.2487 7.9723 -3.6695 14 6 1.9942 8.4301 -2.2332 15 6 3.0646 7.8116 -1.3266 16 6 2.7378 6.3273 -1.1359 17 7 3.5035 1.4443 0.1263 18 6 3.9103 1.3920 1.5369 19 6 5.4083 1.5257 1.6330 20 8 6.0718 1.6517 0.6255 21 7 6.0108 1.5042 2.8384 22 6 7.3736 1.6253 2.9258 23 1 7.9645 1.7375 2.0288 24 6 7.9947 1.6037 4.1687 25 7 7.2758 1.4666 5.2601 26 14 9.8517 1.7680 4.2877 27 1 10.2726 3.0646 3.6988 28 1 10.2629 1.7146 5.7137 29 1 10.4957 0.6548 3.5453 30 1 -0.3633 -1.0225 0.1027 31 1 -0.3634 0.6003 0.8341 32 1 -0.3633 0.4222 -0.9370 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 2.0030 1.5355 -2.1519 36 1 0.5543 2.2029 -1.3621 37 1 2.7768 3.7832 -0.6270 38 1 4.5204 6.5238 -3.2776 39 1 3.9818 4.9878 -4.1460 40 1 3.1942 8.3871 -4.0188 41 1 1.4402 8.3278 -4.3084 42 1 2.0530 9.5171 -2.1797 43 1 1.0067 8.0980 -1.9128 44 1 4.0446 7.9185 -1.7917 45 1 3.0613 8.3156 -0.3601 46 1 1.8062 6.2041 -0.5836 47 1 3.5528 5.8747 -0.5711 48 1 3.9126 0.6845 -0.3965 49 1 3.4369 2.2085 2.0821 50 1 3.6020 0.4399 1.9688 51 1 5.4802 1.4030 3.6441 52 1 7.7095 1.4512 6.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481848091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:54 Heat of formation + Delta-G solvation = -74.446886 kcal Electronic energy + Delta-G solvation = -29816.097762 eV Core-core repulsion = 25814.937385 eV Total energy + Delta-G solvation = -4001.160377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74234 -38.82431 -38.14418 -37.12550 -34.17577 -33.86285 -33.16443 -32.52085 -31.22809 -31.07235 -28.48589 -26.35446 -25.00717 -24.42812 -23.52976 -23.07897 -21.54406 -20.85107 -20.43284 -19.31858 -18.45808 -17.93139 -17.48364 -16.45054 -15.90927 -15.49774 -15.26601 -15.12735 -14.62617 -14.55482 -14.44352 -14.18576 -14.09038 -13.90636 -13.56669 -13.52378 -13.39581 -13.19213 -12.78618 -12.55203 -12.26759 -12.17594 -12.15434 -11.97873 -11.74156 -11.53195 -11.45021 -11.26263 -11.14826 -11.04354 -11.03966 -10.76680 -10.70984 -10.46731 -10.24108 -10.07658 -9.81696 -9.60083 -9.52607 -8.90475 -8.54428 -8.10013 -7.99016 -6.44642 -3.85521 2.59787 3.17791 3.21169 3.23804 3.28065 3.70904 3.87543 4.01762 4.26004 4.42086 4.50961 4.60617 4.68008 4.70735 4.83392 4.89088 5.02558 5.04237 5.08427 5.11620 5.18982 5.27167 5.30735 5.33440 5.35037 5.45893 5.56205 5.61802 5.66537 5.69384 5.74299 5.75362 5.81159 5.84517 5.86928 5.91839 5.93779 5.96404 6.01499 6.07421 6.08901 6.13532 6.22329 6.23883 6.56880 7.10759 7.52181 7.54522 7.68479 8.03052 8.34721 8.58299 9.15136 9.51288 10.02851 10.72981 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.002907 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.122368 B = 9628.075063 C =11924.136055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.084 0.916 5 C 0.134 3.866 6 N -0.706 5.706 7 C 0.545 3.455 8 O -0.554 6.554 9 C -0.140 4.140 10 C -0.154 4.154 11 C -0.117 4.117 12 H 0.115 0.885 13 C -0.089 4.089 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.085 4.085 17 N -0.662 5.662 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.410 0.590 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.352 0.648 49 H 0.085 0.915 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 7.784 -10.132 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.009 3.991 6 N -0.357 5.357 7 C 0.331 3.669 8 O -0.433 6.433 9 C -0.144 4.144 10 C -0.191 4.191 11 C -0.135 4.135 12 H 0.133 0.867 13 C -0.127 4.127 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.122 4.122 17 N -0.294 5.294 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.465 6.465 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.172 0.828 49 H 0.103 0.897 50 H 0.063 0.937 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.282 8.238 -11.277 19.975 hybrid contribution 0.717 -1.022 1.376 1.858 sum -13.565 7.216 -9.902 18.279 Atomic orbital electron populations 1.21776 0.95289 1.01783 1.02049 1.22226 0.96900 0.97247 1.02804 1.21942 0.89105 0.95144 0.97664 0.89807 1.21353 0.97302 0.83008 0.97410 1.45752 1.52593 1.15496 1.21827 1.19613 0.79884 0.85558 0.81835 1.90654 1.39935 1.75283 1.37423 1.21030 1.05517 0.94292 0.93512 1.23213 0.92074 1.03624 1.00209 1.22260 0.98994 0.94410 0.97858 0.86712 1.21107 1.02027 0.92402 0.97131 1.21593 0.99403 0.99822 0.95025 1.21656 0.99151 0.94884 1.00065 1.20902 1.02403 0.95437 0.93495 1.60110 1.05748 1.52995 1.10517 1.21727 0.96040 1.00852 0.89681 1.19796 0.88471 0.84680 0.84498 1.90536 1.65640 1.54805 1.35481 1.41859 1.07952 1.63740 1.06510 1.19646 0.82122 1.46992 0.94182 0.88000 1.25252 1.00528 0.97298 0.94789 1.69599 1.36455 1.50152 0.98144 0.85931 0.82233 0.79128 0.77020 1.19858 1.20976 1.19923 0.92719 0.92569 0.92359 0.91322 0.91331 0.91720 0.91329 0.75319 0.87707 0.88502 0.91342 0.91502 0.91862 0.91672 0.91417 0.91322 0.91006 0.90712 0.82804 0.89692 0.93724 0.77522 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.53 37.16 0.35 -0.91 16 2 C -0.15 -1.48 5.39 -26.73 -0.14 -1.62 16 3 C 0.07 0.80 2.22 -67.71 -0.15 0.65 16 4 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 5 C 0.13 1.60 5.01 -4.04 -0.02 1.58 16 6 N -0.71 -9.10 5.28 -60.30 -0.32 -9.42 16 7 C 0.54 7.71 7.28 -10.99 -0.08 7.63 16 8 O -0.55 -9.47 16.07 5.55 0.09 -9.38 16 9 C -0.14 -1.64 2.50 -156.96 -0.39 -2.04 16 10 C -0.15 -1.71 9.20 -26.77 -0.25 -1.96 16 11 C -0.12 -1.26 5.70 -90.93 -0.52 -1.77 16 12 H 0.11 1.39 7.50 -51.93 -0.39 1.00 16 13 C -0.09 -0.75 5.81 -26.94 -0.16 -0.91 16 14 C -0.12 -0.97 5.92 -26.63 -0.16 -1.13 16 15 C -0.12 -1.04 5.71 -26.48 -0.15 -1.19 16 16 C -0.08 -0.86 4.72 -27.11 -0.13 -0.99 16 17 N -0.66 -9.54 5.23 -107.99 -0.56 -10.11 16 18 C 0.05 0.80 5.99 -4.97 -0.03 0.77 16 19 C 0.44 9.88 7.83 -10.98 -0.09 9.79 16 20 O -0.58 -15.18 15.89 5.55 0.09 -15.10 16 21 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 22 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 26 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 6.98 -51.92 -0.36 0.12 16 33 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 37 H 0.41 5.24 7.11 -40.82 -0.29 4.95 16 38 H 0.10 1.04 7.14 -51.93 -0.37 0.67 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.55 8.04 -51.93 -0.42 0.14 16 44 H 0.07 0.59 7.00 -51.93 -0.36 0.23 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 48 H 0.35 5.43 8.36 -39.30 -0.33 5.10 16 49 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 50 H 0.04 0.65 7.55 -51.93 -0.39 0.26 16 51 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 52 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 411.91 15.07 6.21 6.21 Total: -1.00 -31.53 411.91 -9.94 -41.47 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -8.94 Total: 17.77 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.15 Total: 0.06 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.22 Total: -56.76 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.18 Total: -24.47 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.53 -9.94 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481848091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.979 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds