Wall clock time and date at job start Tue Mar 31 2020 20:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 H 1.08999 * 109.46940 * 54.76930 * 3 2 1 5 5 C 1.52996 * 109.47006 * 294.76597 * 3 2 1 6 6 N 1.46502 * 109.47122 * 185.00041 * 5 3 2 7 7 C 1.34770 * 120.00394 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99749 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00266 * 180.02562 * 7 6 5 10 10 C 1.52311 * 115.91301 * 111.71329 * 9 7 6 11 11 C 1.52070 * 115.93176 * 179.97438 * 9 7 6 12 12 H 1.09001 * 117.25343 * 0.64354 * 11 9 7 13 13 C 1.52712 * 120.52321 * 150.35897 * 11 9 7 14 14 C 1.52883 * 110.15155 * 338.53384 * 13 11 9 15 15 C 1.53303 * 108.57885 * 54.52340 * 14 13 11 16 16 C 1.52070 * 114.63781 * 326.62201 * 9 7 6 17 17 N 1.46899 * 109.46464 * 174.76805 * 3 2 1 18 18 C 1.46898 * 111.00100 * 273.95769 * 17 3 2 19 19 C 1.50705 * 109.47207 * 185.26933 * 18 17 3 20 20 O 1.21292 * 119.99793 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99973 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99725 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00123 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99470 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00159 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99564 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46781 * 60.00322 * 26 24 22 28 28 H 1.48500 * 109.46865 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47092 * 300.00327 * 26 24 22 30 30 H 1.08998 * 109.46907 * 185.73807 * 1 2 3 31 31 H 1.08997 * 109.47429 * 305.74333 * 1 2 3 32 32 H 1.09010 * 109.46863 * 65.74361 * 1 2 3 33 33 H 1.09004 * 109.46635 * 119.99737 * 2 1 3 34 34 H 1.08998 * 109.46951 * 239.99653 * 2 1 3 35 35 H 1.08992 * 109.47372 * 305.00501 * 5 3 2 36 36 H 1.09000 * 109.47106 * 65.00753 * 5 3 2 37 37 H 0.97005 * 119.99862 * 0.02562 * 6 5 3 38 38 H 1.08998 * 117.53578 * 213.90200 * 10 9 7 39 39 H 1.08997 * 117.53456 * 359.14900 * 10 9 7 40 40 H 1.08997 * 109.35394 * 98.74107 * 13 11 9 41 41 H 1.09002 * 109.35960 * 218.46430 * 13 11 9 42 42 H 1.08997 * 109.61639 * 174.24198 * 14 13 11 43 43 H 1.08999 * 109.61957 * 294.79310 * 14 13 11 44 44 H 1.09002 * 109.62116 * 45.28507 * 15 14 13 45 45 H 1.08999 * 109.61532 * 165.64770 * 15 14 13 46 46 H 1.08997 * 109.26556 * 314.63669 * 16 9 7 47 47 H 1.09001 * 109.26776 * 74.10298 * 16 9 7 48 48 H 1.00894 * 111.00336 * 37.91945 * 17 3 2 49 49 H 1.08999 * 109.47211 * 305.26754 * 18 17 3 50 50 H 1.08998 * 109.47207 * 65.26411 * 18 17 3 51 51 H 0.96993 * 120.00233 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9826 0.8394 5 6 1.6402 2.1247 -1.3098 6 7 2.2292 3.4651 -1.3619 7 6 2.0104 4.2564 -2.4307 8 8 1.3255 3.8589 -3.3493 9 6 2.6168 5.6349 -2.4844 10 6 3.7073 5.8422 -3.5274 11 6 2.3107 6.4478 -3.7327 12 1 1.6731 5.9849 -4.4859 13 6 2.2487 7.9723 -3.6695 14 6 1.9942 8.4301 -2.2332 15 6 3.0646 7.8116 -1.3266 16 6 2.7378 6.3273 -1.1359 17 7 3.5035 1.4443 0.1263 18 6 3.9103 1.3920 1.5369 19 6 5.4083 1.5257 1.6330 20 8 6.0718 1.6517 0.6255 21 7 6.0108 1.5042 2.8384 22 6 7.3736 1.6253 2.9258 23 1 7.9645 1.7375 2.0288 24 6 7.9947 1.6037 4.1687 25 7 7.2758 1.4666 5.2601 26 14 9.8517 1.7680 4.2877 27 1 10.2726 3.0646 3.6988 28 1 10.2629 1.7146 5.7137 29 1 10.4957 0.6548 3.5453 30 1 -0.3633 -1.0225 0.1027 31 1 -0.3634 0.6003 0.8341 32 1 -0.3633 0.4222 -0.9370 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 2.0030 1.5355 -2.1519 36 1 0.5543 2.2029 -1.3621 37 1 2.7768 3.7832 -0.6270 38 1 4.5204 6.5238 -3.2776 39 1 3.9818 4.9878 -4.1460 40 1 3.1942 8.3871 -4.0188 41 1 1.4402 8.3278 -4.3084 42 1 2.0530 9.5171 -2.1797 43 1 1.0067 8.0980 -1.9128 44 1 4.0446 7.9185 -1.7917 45 1 3.0613 8.3156 -0.3601 46 1 1.8062 6.2041 -0.5836 47 1 3.5528 5.8747 -0.5711 48 1 3.9126 0.6845 -0.3965 49 1 3.4369 2.2085 2.0821 50 1 3.6020 0.4399 1.9688 51 1 5.4802 1.4030 3.6441 52 1 7.7095 1.4512 6.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481848091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:53 Heat of formation + Delta-G solvation = -95.669294 kcal Electronic energy + Delta-G solvation = -29817.018035 eV Core-core repulsion = 25814.937385 eV Total energy + Delta-G solvation = -4002.080650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71007 -40.24702 -39.40499 -38.31339 -35.96390 -35.13851 -33.95129 -33.62541 -33.15647 -31.84807 -29.56211 -27.82093 -26.15716 -25.54610 -24.68894 -23.92505 -22.38754 -21.83153 -21.33757 -21.05464 -19.89734 -19.34201 -18.46858 -17.79361 -17.24791 -16.69404 -16.61121 -16.33138 -16.14766 -15.77696 -15.52535 -15.31355 -15.01671 -14.93192 -14.86131 -14.47632 -14.37186 -14.18181 -13.96109 -13.59777 -13.49639 -13.42377 -13.30261 -12.98245 -12.92252 -12.84559 -12.59065 -12.53606 -12.41009 -12.12469 -12.09275 -11.90665 -11.76129 -11.60699 -11.47698 -11.47076 -10.93497 -10.66695 -10.62941 -10.31992 -10.00137 -9.98685 -9.32279 -8.44900 -5.93003 1.40447 1.42609 1.50929 1.52858 2.09389 2.20294 2.30038 2.79290 2.87810 3.22879 3.51359 3.57982 3.70377 3.76169 3.79212 3.85318 3.97664 4.12755 4.19380 4.28661 4.33679 4.34210 4.37149 4.49547 4.53509 4.56784 4.58871 4.61383 4.70244 4.74224 4.78970 4.82155 4.90948 4.97744 5.01813 5.09938 5.13647 5.19996 5.22079 5.27160 5.33716 5.36626 5.39041 5.42732 5.50874 5.53592 5.89060 6.10158 6.34198 6.59477 6.63055 7.15505 7.24909 7.60063 8.15837 8.72172 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.002907 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.122368 B = 9628.075063 C =11924.136055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.099 0.901 5 C 0.135 3.865 6 N -0.701 5.701 7 C 0.538 3.462 8 O -0.590 6.590 9 C -0.148 4.148 10 C -0.156 4.156 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.086 4.086 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.081 4.081 17 N -0.673 5.673 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.345 0.655 49 H 0.109 0.891 50 H 0.068 0.932 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 8.733 -9.215 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.117 0.883 5 C 0.011 3.989 6 N -0.351 5.351 7 C 0.325 3.675 8 O -0.471 6.471 9 C -0.151 4.151 10 C -0.194 4.194 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.124 4.124 14 C -0.155 4.155 15 C -0.156 4.156 16 C -0.119 4.119 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.212 5.212 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.164 0.836 49 H 0.127 0.873 50 H 0.085 0.915 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.984 9.182 -10.331 20.385 hybrid contribution 0.883 -1.362 1.022 1.918 sum -14.102 7.819 -9.308 18.619 Atomic orbital electron populations 1.21751 0.94007 1.02488 1.02325 1.22163 0.97929 0.95888 1.02693 1.21924 0.86986 0.96269 0.97537 0.88328 1.21396 0.97712 0.82445 0.97383 1.45796 1.52136 1.15681 1.21499 1.20086 0.79441 0.86509 0.81456 1.90627 1.41656 1.76220 1.38627 1.21100 1.05848 0.93375 0.94774 1.23252 0.92755 1.03526 0.99843 1.22291 0.98008 0.95952 0.96614 0.88533 1.21143 1.03082 0.90278 0.97871 1.21583 0.98805 1.00832 0.94300 1.21672 0.99421 0.93673 1.00859 1.20899 1.02249 0.96437 0.92289 1.60059 1.07879 1.53020 1.09480 1.21571 0.91044 1.02913 0.91087 1.20904 0.91091 0.82175 0.83138 1.90510 1.67516 1.56010 1.36715 1.41921 1.07250 1.64555 1.07432 1.19597 0.83628 1.49068 0.93876 0.90448 1.25972 1.04528 0.96465 0.94155 1.69656 1.37916 1.50097 0.98462 0.85051 0.77273 0.78914 0.77504 1.19686 1.19589 1.19887 0.91951 0.91802 0.92474 0.91233 0.91688 0.93235 0.90398 0.75127 0.86182 0.90070 0.90210 0.90521 0.90063 0.92179 0.91299 0.90308 0.90710 0.91526 0.83593 0.87339 0.91462 0.77007 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.53 71.98 0.69 -1.48 16 2 C -0.15 -2.60 5.39 30.60 0.16 -2.44 16 3 C 0.08 1.70 2.22 44.91 0.10 1.80 16 4 H 0.10 1.80 7.70 -2.39 -0.02 1.78 16 5 C 0.13 3.15 5.01 86.38 0.43 3.59 16 6 N -0.70 -17.98 5.28 -463.08 -2.45 -20.42 16 7 C 0.54 15.44 7.28 87.66 0.64 16.08 16 8 O -0.59 -20.72 16.07 -3.05 -0.05 -20.77 16 9 C -0.15 -3.45 2.50 -53.77 -0.13 -3.59 16 10 C -0.16 -3.49 9.20 30.57 0.28 -3.21 16 11 C -0.11 -2.34 5.70 -10.99 -0.06 -2.40 16 12 H 0.10 2.42 7.50 -2.39 -0.02 2.40 16 13 C -0.09 -1.31 5.81 30.46 0.18 -1.13 16 14 C -0.12 -1.64 5.92 30.66 0.18 -1.46 16 15 C -0.12 -1.84 5.71 30.75 0.18 -1.67 16 16 C -0.08 -1.57 4.72 30.35 0.14 -1.43 16 17 N -0.67 -18.75 5.23 -495.58 -2.59 -21.34 16 18 C 0.07 2.01 5.99 85.56 0.51 2.52 16 19 C 0.44 19.71 7.83 87.66 0.69 20.40 16 20 O -0.62 -33.10 15.89 -3.07 -0.05 -33.14 16 21 N -0.57 -28.26 5.29 -306.97 -1.62 -29.88 16 22 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 23 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 26 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 6.98 -2.38 -0.02 0.84 16 33 H 0.07 1.25 7.51 -2.39 -0.02 1.23 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.71 6.96 -2.39 -0.02 1.69 16 37 H 0.41 10.32 7.11 -92.70 -0.66 9.66 16 38 H 0.12 2.28 7.14 -2.39 -0.02 2.26 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.05 8.03 -2.39 -0.02 1.03 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 44 H 0.07 1.06 7.00 -2.39 -0.02 1.05 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.39 7.81 -2.39 -0.02 1.37 16 48 H 0.35 10.53 8.36 -89.70 -0.75 9.78 16 49 H 0.11 2.85 7.92 -2.39 -0.02 2.83 16 50 H 0.07 1.80 7.55 -2.39 -0.02 1.78 16 51 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 52 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -68.95 411.91 -0.39 -69.33 By element: Atomic # 1 Polarization: 53.66 SS G_CDS: -1.20 Total: 52.46 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.26 Total: 7.86 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.38 Total: -119.99 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.10 Total: -53.91 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -68.95 -0.39 -69.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481848091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.337 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds