Wall clock time and date at job start Tue Mar 31 2020 20:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 H 1.09002 * 109.46566 * 54.38570 * 3 2 1 5 5 C 1.52999 * 109.47424 * 294.38439 * 3 2 1 6 6 N 1.46499 * 109.47061 * 185.00008 * 5 3 2 7 7 C 1.34780 * 119.99818 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99750 * 180.02562 * 7 6 5 10 10 H 1.09002 * 115.56166 * 11.88925 * 9 7 6 11 11 C 1.53092 * 117.51057 * 157.60967 * 9 7 6 12 12 C 1.52557 * 117.51037 * 226.10367 * 9 7 6 13 13 C 1.53873 * 120.82336 * 142.33517 * 12 9 7 14 14 C 1.55000 * 104.05911 * 192.35802 * 13 12 9 15 15 C 1.54923 * 102.82252 * 37.56883 * 14 13 12 16 16 C 1.53482 * 121.08903 * 2.96730 * 12 9 7 17 17 N 1.46896 * 109.47025 * 174.38083 * 3 2 1 18 18 C 1.46901 * 111.00264 * 273.29639 * 17 3 2 19 19 C 1.50699 * 109.47418 * 174.82615 * 18 17 3 20 20 O 1.21288 * 119.99968 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00065 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00208 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99868 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00509 * 180.02562 * 22 21 19 25 25 N 1.31398 * 120.00160 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99446 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47092 * 90.00499 * 26 24 22 28 28 H 1.48500 * 109.47093 * 210.00048 * 26 24 22 29 29 H 1.48499 * 109.47778 * 330.00177 * 26 24 22 30 30 H 1.09000 * 109.47778 * 65.73929 * 1 2 3 31 31 H 1.09004 * 109.47385 * 185.74286 * 1 2 3 32 32 H 1.09001 * 109.47196 * 305.74122 * 1 2 3 33 33 H 1.08997 * 109.46776 * 240.00707 * 2 1 3 34 34 H 1.08992 * 109.47062 * 120.00031 * 2 1 3 35 35 H 1.09001 * 109.47002 * 305.00110 * 5 3 2 36 36 H 1.09001 * 109.47374 * 64.99964 * 5 3 2 37 37 H 0.97001 * 120.00031 * 0.02562 * 6 5 3 38 38 H 1.09004 * 117.50955 * 214.91234 * 11 9 7 39 39 H 1.09003 * 117.50893 * 359.97438 * 11 9 7 40 40 H 1.08996 * 110.51753 * 310.99646 * 13 12 9 41 41 H 1.08998 * 110.51398 * 73.71656 * 13 12 9 42 42 H 1.09001 * 110.73747 * 279.23499 * 14 13 12 43 43 H 1.08998 * 110.89881 * 155.97815 * 14 13 12 44 44 H 1.08991 * 110.47976 * 203.59587 * 15 14 13 45 45 H 1.09004 * 110.47707 * 80.96651 * 15 14 13 46 46 H 1.08996 * 110.06973 * 263.31993 * 16 12 9 47 47 H 1.09003 * 110.07044 * 24.84459 * 16 12 9 48 48 H 1.00902 * 111.00433 * 149.33978 * 17 3 2 49 49 H 1.09001 * 109.47136 * 294.82995 * 18 17 3 50 50 H 1.08999 * 109.46985 * 54.82584 * 18 17 3 51 51 H 0.97001 * 120.00052 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9845 0.8355 5 6 1.6484 2.1220 -1.3138 6 7 2.2378 3.4622 -1.3650 7 6 2.0265 4.2507 -2.4375 8 8 1.3489 3.8505 -3.3603 9 6 2.6332 5.6291 -2.4904 10 1 3.3858 5.8412 -1.7310 11 6 2.8213 6.2665 -3.8696 12 6 1.7328 6.7789 -2.9315 13 6 1.8471 8.1662 -2.2756 14 6 0.5824 8.9183 -2.7628 15 6 -0.4999 7.8099 -2.7585 16 6 0.2474 6.5482 -3.2416 17 7 3.5026 1.4448 0.1356 18 6 3.9004 1.4115 1.5494 19 6 5.3990 1.2867 1.6468 20 8 6.0698 1.2314 0.6379 21 7 5.9940 1.2375 2.8551 22 6 7.3573 1.1234 2.9438 23 1 7.9546 1.0734 2.0454 24 6 7.9707 1.0721 4.1896 25 7 9.2774 0.9633 4.2745 26 14 6.9377 1.1594 5.7435 27 1 6.5467 -0.2127 6.1557 28 1 7.7277 1.7958 6.8280 29 1 5.7174 1.9644 5.4823 30 1 -0.3635 0.4222 -0.9369 31 1 -0.3634 -1.0225 0.1028 32 1 -0.3633 0.6003 0.8341 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0166 1.5308 -2.1523 36 1 0.5628 2.1999 -1.3732 37 1 2.7807 3.7818 -0.6274 38 1 3.6972 6.8983 -4.0170 39 1 2.5065 5.6885 -4.7385 40 1 1.8433 8.0766 -1.1893 41 1 2.7489 8.6758 -2.6147 42 1 0.7300 9.3100 -3.7692 43 1 0.3170 9.7198 -2.0734 44 1 -1.3068 8.0621 -3.4464 45 1 -0.8888 7.6606 -1.7512 46 1 0.1053 6.4170 -4.3143 47 1 -0.1147 5.6708 -2.7058 48 1 3.9083 2.2396 -0.3355 49 1 3.5797 2.3312 2.0388 50 1 3.4321 0.5574 2.0385 51 1 5.4575 1.2820 3.6621 52 1 9.7057 0.9279 5.1441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481865112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:12 Heat of formation + Delta-G solvation = -85.039179 kcal Electronic energy + Delta-G solvation = -29303.107723 eV Core-core repulsion = 25301.488029 eV Total energy + Delta-G solvation = -4001.619694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47640 -40.39601 -39.46685 -38.31952 -36.02613 -35.05517 -35.03782 -33.86848 -33.62298 -29.89390 -29.65383 -28.03215 -26.63538 -25.81345 -24.94417 -24.00135 -21.81820 -21.49944 -21.30566 -21.02000 -20.32580 -19.79986 -18.18446 -17.82722 -17.33805 -16.87190 -16.72908 -16.60272 -16.30603 -16.19177 -15.66530 -15.45948 -15.30978 -14.95983 -14.64419 -14.55564 -14.24491 -14.21055 -13.97371 -13.87401 -13.53694 -13.33564 -13.26052 -13.11995 -12.92205 -12.67631 -12.43202 -12.40364 -12.08838 -12.03226 -11.97255 -11.96313 -11.86120 -11.52758 -11.49598 -11.44471 -11.26973 -11.03580 -10.63662 -10.43287 -10.24219 -10.15148 -9.37625 -8.40499 -6.01550 1.30520 1.36762 1.38604 1.45393 1.96526 2.06219 2.23840 2.66379 2.83217 3.15839 3.32246 3.41040 3.61844 3.65302 3.77799 3.87443 3.96974 4.05252 4.15902 4.20858 4.24879 4.28196 4.38745 4.44722 4.51690 4.54089 4.58891 4.67162 4.71212 4.75464 4.79732 4.85162 4.87872 4.94961 5.00048 5.05451 5.08941 5.20468 5.22839 5.25576 5.28705 5.32734 5.37174 5.46940 5.47794 5.54328 5.89821 6.02345 6.31421 6.40412 6.60469 6.89259 7.15137 7.40790 7.98006 8.77209 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.002409 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.610761 B =11619.272979 C =13005.081374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.075 0.925 5 C 0.123 3.877 6 N -0.722 5.722 7 C 0.542 3.458 8 O -0.575 6.575 9 C -0.195 4.195 10 H 0.137 0.863 11 C -0.135 4.135 12 C -0.088 4.088 13 C -0.089 4.089 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.088 4.088 17 N -0.685 5.685 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.054 0.946 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.966 3.034 27 H -0.259 1.259 28 H -0.276 1.276 29 H -0.228 1.228 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.407 0.593 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.344 0.656 49 H 0.084 0.916 50 H 0.115 0.885 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.884 13.641 -6.685 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.023 4.023 4 H 0.093 0.907 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.330 3.670 8 O -0.455 6.455 9 C -0.216 4.216 10 H 0.155 0.845 11 C -0.173 4.173 12 C -0.089 4.089 13 C -0.126 4.126 14 C -0.156 4.156 15 C -0.159 4.159 16 C -0.125 4.125 17 N -0.320 5.320 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.232 5.232 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.243 0.757 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.164 0.836 49 H 0.102 0.898 50 H 0.133 0.867 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.683 12.608 -7.979 28.842 hybrid contribution 0.639 0.369 1.302 1.497 sum -24.044 12.977 -6.677 28.127 Atomic orbital electron populations 1.21794 0.94047 1.02583 1.02233 1.21490 0.96227 0.94539 1.02700 1.21871 0.86603 0.97529 0.96299 0.90741 1.21562 0.98788 0.81923 0.97758 1.45957 1.53771 1.16308 1.21398 1.19993 0.79433 0.86285 0.81273 1.90664 1.41185 1.75680 1.37923 1.22408 1.05407 0.90842 1.02956 0.84504 1.23110 1.01001 1.01741 0.91398 1.21863 0.92522 0.93460 1.01040 1.21995 0.99374 0.91062 1.00191 1.22479 0.93885 0.97258 1.01966 1.22380 0.98016 0.94096 1.01453 1.21606 0.91997 0.98176 1.00727 1.59972 1.08952 1.50764 1.12271 1.21712 0.90213 1.04186 0.91005 1.20999 0.91322 0.81224 0.82823 1.90559 1.67285 1.55067 1.36918 1.42024 1.06358 1.67423 1.07442 1.18990 0.82303 1.49831 0.94597 0.92825 1.26135 0.97145 0.96108 1.02102 1.69804 1.10811 1.50065 1.26918 0.85357 0.79261 0.80022 0.76814 1.18321 1.20153 1.15102 0.92618 0.91837 0.91621 0.92476 0.91379 0.92575 0.89818 0.75707 0.85851 0.89290 0.90390 0.90133 0.90997 0.90007 0.90889 0.91385 0.92267 0.93405 0.83587 0.89812 0.86690 0.77440 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.54 71.98 0.69 -1.43 16 2 C -0.11 -2.10 5.65 30.59 0.17 -1.93 16 3 C 0.09 1.68 2.27 44.92 0.10 1.79 16 4 H 0.07 1.15 7.83 -2.39 -0.02 1.13 16 5 C 0.12 2.60 4.95 86.38 0.43 3.02 16 6 N -0.72 -14.98 4.97 -463.06 -2.30 -17.28 16 7 C 0.54 13.10 6.85 87.66 0.60 13.70 16 8 O -0.57 -17.72 15.09 -3.04 -0.05 -17.77 16 9 C -0.20 -3.69 6.05 -11.66 -0.07 -3.76 16 10 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 11 C -0.14 -2.43 9.75 30.48 0.30 -2.13 16 12 C -0.09 -1.47 2.43 -52.02 -0.13 -1.59 16 13 C -0.09 -1.07 6.58 31.57 0.21 -0.86 16 14 C -0.12 -1.26 6.91 31.94 0.22 -1.04 16 15 C -0.12 -1.59 6.84 31.72 0.22 -1.38 16 16 C -0.09 -1.60 5.66 31.23 0.18 -1.42 16 17 N -0.68 -18.71 5.84 -495.58 -2.89 -21.61 16 18 C 0.06 1.70 5.93 85.56 0.51 2.21 16 19 C 0.45 19.50 7.83 87.66 0.69 20.19 16 20 O -0.61 -33.55 15.89 -3.06 -0.05 -33.60 16 21 N -0.59 -26.96 5.09 -306.99 -1.56 -28.52 16 22 C -0.33 -18.94 10.16 84.04 0.85 -18.09 16 23 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 25 N -0.94 -55.99 13.96 21.66 0.30 -55.69 16 26 Si 0.97 37.81 27.73 68.60 1.90 39.71 16 27 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 28 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 29 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 30 H 0.05 0.80 6.99 -2.39 -0.02 0.78 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.33 7.41 -2.39 -0.02 1.31 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.64 6.97 -2.39 -0.02 1.63 16 37 H 0.41 7.12 7.40 -92.71 -0.69 6.44 16 38 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.09 1.92 7.85 -2.39 -0.02 1.90 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.82 8.11 -2.39 -0.02 0.80 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.06 6.83 -2.39 -0.02 1.05 16 48 H 0.34 9.90 6.61 -89.69 -0.59 9.31 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.12 2.70 7.39 -2.39 -0.02 2.68 16 51 H 0.39 14.50 5.76 -92.71 -0.53 13.97 16 52 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.50 412.89 -0.16 -79.66 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: -0.94 Total: 48.26 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.43 Total: 6.84 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.46 Total: -123.10 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.37 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Total: -79.50 -0.16 -79.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481865112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.378 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds